Wall clock time and date at job start Mon Mar 30 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47272 * 239.99968 * 3 2 1 5 5 H 1.48501 * 109.46704 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46811 * 119.99880 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99834 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.40109 * 119.99481 * 180.02562 * 13 11 10 15 15 C 1.34777 * 119.99659 * 180.27982 * 14 13 11 16 16 O 1.21603 * 120.00257 * 359.71857 * 15 14 13 17 17 C 1.47425 * 119.99743 * 179.72167 * 15 14 13 18 18 C 1.41291 * 126.41775 * 359.68942 * 17 15 14 19 19 N 1.30443 * 108.02710 * 179.81652 * 18 17 15 20 20 N 1.39928 * 108.89523 * 0.44405 * 19 18 17 21 21 H 0.97006 * 125.75471 * 179.69218 * 20 19 18 22 22 C 1.34258 * 108.49243 * 359.71006 * 20 19 18 23 23 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46967 * 59.99619 * 10 9 7 25 25 H 1.09007 * 109.46677 * 300.00127 * 10 9 7 26 26 H 0.97000 * 120.00718 * 0.02562 * 13 11 10 27 27 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 28 28 H 1.08009 * 125.98683 * 359.95817 * 18 17 15 29 29 H 1.07999 * 126.29301 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 7 2.3529 -7.6552 -0.0029 15 6 3.2097 -8.6955 0.0021 16 8 4.4092 -8.4954 0.0025 17 6 2.6928 -10.0761 0.0071 18 6 1.3338 -10.4629 0.0134 19 7 1.2852 -11.7665 0.0124 20 7 2.5912 -12.2687 0.0158 21 1 2.8377 -13.2069 0.0201 22 6 3.4457 -11.2331 0.0125 23 1 -0.4850 0.8401 0.0004 24 1 3.1245 -3.7313 0.8894 25 1 3.1245 -3.7313 -0.8906 26 1 3.8010 -6.1835 -0.0015 27 1 1.3961 -7.8147 -0.0029 28 1 0.4842 -9.7961 0.0161 29 1 4.5239 -11.2941 0.0134 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329529223.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:50 Heat of formation + Delta-G solvation = 6.253195 kcal Electronic energy + Delta-G solvation = -16927.076610 eV Core-core repulsion = 13785.453038 eV Total energy + Delta-G solvation = -3141.623572 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.41091 -41.15366 -39.71898 -36.39106 -34.55794 -33.54017 -32.50521 -31.38555 -29.76535 -27.62585 -24.42646 -23.08464 -22.54022 -21.29306 -20.06798 -19.45658 -18.93880 -17.84987 -16.86698 -16.84939 -16.66925 -16.16115 -16.14582 -15.57980 -15.42616 -15.23906 -14.87488 -14.51082 -13.86482 -13.79621 -13.14851 -12.84789 -12.63886 -12.41454 -12.32782 -11.76330 -11.37936 -11.11194 -11.10182 -10.90043 -10.27955 -10.03442 -9.40589 -8.63781 -8.32419 -6.10018 0.45793 0.61788 1.03843 1.36935 1.44825 1.47085 1.53063 1.66285 1.86303 2.29028 2.32762 2.97115 3.02329 3.30601 3.53057 3.86576 3.88356 4.05492 4.28727 4.36568 4.52241 4.64083 5.24552 5.45549 5.53093 5.70702 6.19631 6.22587 6.39456 6.51765 6.81619 7.09575 7.30202 8.76310 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.063505 B = 0.003019 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.806437 B = 9271.160563 C = 9696.807989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.085 0.915 9 S -0.135 6.135 10 C -0.124 4.124 11 C 0.541 3.459 12 O -0.553 6.553 13 N -0.514 5.514 14 N -0.517 5.517 15 C 0.601 3.399 16 O -0.579 6.579 17 C -0.315 4.315 18 C 0.087 3.913 19 N -0.319 5.319 20 N -0.446 5.446 21 H 0.463 0.537 22 C 0.163 3.837 23 H 0.271 0.729 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.440 0.560 27 H 0.435 0.565 28 H 0.207 0.793 29 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.413 -22.803 0.045 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.103 0.897 9 S 0.092 5.908 10 C -0.276 4.276 11 C 0.327 3.673 12 O -0.429 6.429 13 N -0.264 5.264 14 N -0.264 5.264 15 C 0.391 3.609 16 O -0.459 6.459 17 C -0.332 4.332 18 C -0.101 4.101 19 N -0.139 5.139 20 N -0.153 5.153 21 H 0.311 0.689 22 C 0.008 3.992 23 H 0.080 0.920 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.284 0.716 27 H 0.278 0.722 28 H 0.224 0.776 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 7.325 -23.952 0.040 25.047 hybrid contribution 2.042 1.569 0.004 2.575 sum 9.367 -22.383 0.045 24.264 Atomic orbital electron populations 1.70163 1.07905 1.28688 1.47933 1.26078 0.95920 1.03184 0.93718 0.85031 0.77815 0.75856 0.79470 1.18719 1.20519 1.18731 1.23207 0.95545 0.91979 1.58979 0.89667 1.85544 1.09447 0.98734 1.97094 1.23281 1.04256 0.92254 1.07811 1.20264 0.86010 0.85539 0.75482 1.90711 1.16492 1.85395 1.50320 1.44751 1.10460 0.94643 1.76526 1.44693 1.10776 0.94690 1.76217 1.17552 0.84973 0.83176 0.75185 1.90778 1.15702 1.85881 1.53528 1.19862 0.94178 0.91926 1.27192 1.24482 0.97125 0.92848 0.95689 1.77189 0.99718 1.11606 1.25425 1.46297 1.03429 1.10147 1.55410 0.68858 1.23449 0.98774 0.85621 0.91387 0.91984 0.86339 0.86343 0.71623 0.72187 0.77634 0.76009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.82 13.22 21.65 0.29 -54.53 15 2 C 0.02 0.89 5.49 84.86 0.47 1.36 15 3 Si 1.00 42.80 29.55 68.60 2.03 44.83 15 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 15 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 15 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 15 7 C -0.55 -30.48 9.50 67.95 0.65 -29.83 15 8 H 0.09 4.36 7.80 -2.91 -0.02 4.34 15 9 S -0.13 -7.18 20.57 -56.49 -1.16 -8.34 15 10 C -0.12 -4.63 6.16 71.24 0.44 -4.19 15 11 C 0.54 18.94 7.96 87.66 0.70 19.64 15 12 O -0.55 -23.39 15.70 -3.01 -0.05 -23.44 15 13 N -0.51 -14.05 6.26 -173.54 -1.09 -15.13 15 14 N -0.52 -12.54 6.25 -175.89 -1.10 -13.64 15 15 C 0.60 13.74 7.93 86.66 0.69 14.43 15 16 O -0.58 -15.99 16.74 -4.04 -0.07 -16.06 15 17 C -0.32 -5.38 6.13 -20.15 -0.12 -5.50 15 18 C 0.09 1.39 11.50 85.65 0.99 2.37 15 19 N -0.32 -5.18 12.63 -56.27 -0.71 -5.89 15 20 N -0.45 -4.19 7.29 -56.32 -0.41 -4.60 15 21 H 0.46 0.85 8.96 -213.42 -1.91 -1.06 15 22 C 0.16 1.77 11.82 84.28 1.00 2.76 15 23 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 24 H 0.12 3.95 8.14 -2.39 -0.02 3.93 15 25 H 0.12 3.95 8.14 -2.39 -0.02 3.93 15 26 H 0.44 10.45 8.00 -213.31 -1.71 8.74 15 27 H 0.44 9.76 6.95 -213.31 -1.48 8.27 15 28 H 0.21 2.46 7.50 -2.91 -0.02 2.44 15 29 H 0.22 1.04 8.06 -2.91 -0.02 1.01 15 Total: -1.00 -79.49 287.91 -1.34 -80.82 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -3.86 Total: 14.95 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 4.79 Total: 1.04 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -3.02 Total: -93.80 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.11 Total: -39.49 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -7.18 SS G_CDS: -1.16 Total: -8.34 kcal Total: -79.49 -1.34 -80.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329529223.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.078 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds