Wall clock time and date at job start Mon Mar 30 2020 01:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86807 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46950 * 274.98375 * 3 2 1 5 5 H 1.48500 * 109.46920 * 34.98305 * 3 2 1 6 6 H 1.48503 * 109.47020 * 154.98683 * 3 2 1 7 7 C 1.40047 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00244 * 186.15047 * 7 2 1 9 9 C 1.46373 * 120.00358 * 6.14700 * 7 2 1 10 10 O 1.21694 * 119.99643 * 353.94248 * 9 7 2 11 11 N 1.34775 * 120.00323 * 173.94235 * 9 7 2 12 12 C 1.46496 * 119.99831 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47239 * 179.97438 * 12 11 9 14 14 C 1.35345 * 126.75061 * 94.99219 * 13 12 11 15 15 N 1.35316 * 106.17501 * 179.97438 * 14 13 12 16 16 C 1.46495 * 125.86834 * 179.97438 * 15 14 13 17 17 C 1.50711 * 109.46701 * 125.00596 * 16 15 14 18 18 C 1.31159 * 119.99453 * 124.72992 * 17 16 15 19 19 Cl 1.73604 * 119.99733 * 180.27852 * 18 17 16 20 20 N 1.28710 * 108.26239 * 0.26969 * 15 14 13 21 21 N 1.28636 * 110.17650 * 359.55377 * 20 15 14 22 22 H 0.96999 * 120.00208 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00007 * 359.97438 * 11 9 7 24 24 H 1.08997 * 109.47835 * 59.99696 * 12 11 9 25 25 H 1.09006 * 109.47430 * 299.99797 * 12 11 9 26 26 H 1.07997 * 126.91548 * 359.97270 * 14 13 12 27 27 H 1.08999 * 109.47465 * 5.01365 * 16 15 14 28 28 H 1.08992 * 109.47523 * 245.00656 * 16 15 14 29 29 H 1.07992 * 119.99687 * 304.99978 * 17 16 15 30 30 H 1.07993 * 120.00275 * 0.26971 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5870 1.4121 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0997 9 6 1.2815 -2.4768 -0.1368 10 8 0.0646 -2.4827 -0.1388 11 7 1.9612 -3.6341 -0.2602 12 6 1.2351 -4.8990 -0.3971 13 6 2.2201 -6.0331 -0.5182 14 6 2.6768 -6.8195 0.4842 15 7 3.5362 -7.6957 -0.0857 16 6 4.2801 -8.7464 0.6134 17 6 3.9971 -10.0777 -0.0338 18 6 4.9878 -10.8199 -0.4672 19 17 4.6615 -12.3502 -1.2192 20 7 3.5924 -7.4433 -1.3466 21 7 2.8146 -6.4609 -1.6375 22 1 -0.4850 0.8400 0.0004 23 1 2.9312 -3.6293 -0.2590 24 1 0.6100 -4.8644 -1.2894 25 1 0.6074 -5.0545 0.4804 26 1 2.4092 -6.7598 1.5288 27 1 3.9705 -8.7772 1.6580 28 1 5.3478 -8.5346 0.5569 29 1 2.9784 -10.4185 -0.1447 30 1 6.0066 -10.4791 -0.3563 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330801658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:57 Heat of formation + Delta-G solvation = 71.991208 kcal Electronic energy + Delta-G solvation = -17052.142629 eV Core-core repulsion = 13911.325965 eV Total energy + Delta-G solvation = -3140.816664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.22601 -37.47034 -37.23757 -36.05220 -33.76615 -32.65446 -32.30100 -30.72768 -27.53957 -26.94503 -25.03353 -22.24119 -21.50845 -20.61582 -19.64943 -17.82809 -17.04458 -16.55686 -16.18363 -15.31634 -14.85531 -14.77794 -14.41223 -13.93212 -13.55259 -13.41073 -12.82164 -12.59321 -12.53922 -12.13519 -11.61741 -11.38362 -11.35240 -11.13827 -10.95711 -10.64063 -10.44095 -10.22207 -10.15372 -9.74894 -9.22034 -8.82344 -7.58820 -7.49666 -6.17181 -4.60870 1.05273 1.52334 1.77612 2.39223 2.60566 3.16518 3.23647 3.26969 4.03087 4.14444 4.15893 4.40206 4.52969 4.61987 4.69652 4.93080 5.14054 5.26562 5.46469 5.52307 5.60374 5.83509 6.08968 6.42416 6.49184 6.53373 7.46455 7.93975 8.08797 8.35727 8.57875 9.05162 9.54511 10.61697 10.79924 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.057712 B = 0.002776 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.054927 B =10083.390499 C =10279.128959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.581 6.581 11 N -0.761 5.761 12 C 0.216 3.784 13 C -0.017 4.017 14 C -0.039 4.039 15 N -0.299 5.299 16 C 0.156 3.844 17 C -0.166 4.166 18 C -0.071 4.071 19 Cl -0.081 7.081 20 N -0.086 5.086 21 N -0.252 5.252 22 H 0.268 0.732 23 H 0.381 0.619 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.193 0.807 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.039 -20.573 4.215 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.089 3.911 13 C -0.154 4.154 14 C -0.189 4.189 15 N -0.093 5.093 16 C 0.035 3.965 17 C -0.186 4.186 18 C -0.116 4.116 19 Cl -0.052 7.052 20 N -0.065 5.065 21 N -0.120 5.120 22 H 0.079 0.921 23 H 0.212 0.788 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.210 0.790 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.149 0.851 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.547 -21.019 2.817 23.685 hybrid contribution 0.549 0.790 1.076 1.443 sum 11.095 -20.229 3.893 23.398 Atomic orbital electron populations 1.70022 1.07060 1.27258 1.35312 1.25698 0.94599 1.00267 0.92617 0.86361 0.80180 0.81501 0.78709 1.19777 1.20479 1.18945 1.20858 0.94073 0.89474 1.53703 0.91426 1.18220 0.87122 0.82187 0.76381 1.90604 1.14036 1.86272 1.55449 1.46157 1.08679 1.05034 1.81890 1.19065 0.90216 0.80021 1.01795 1.22381 1.02905 1.01123 0.89008 1.23498 0.98338 0.95237 1.01852 1.47288 1.30662 1.23991 1.07390 1.20885 0.97489 0.82040 0.96116 1.23077 1.00556 0.94758 1.00221 1.24467 1.00687 0.88522 0.97959 1.98401 1.95929 1.30477 1.80408 1.78318 1.19282 1.13773 0.95154 1.75145 1.06362 1.05452 1.25009 0.92110 0.78771 0.91390 0.91429 0.79015 0.85985 0.87641 0.85052 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.12 11.85 55.55 0.66 -22.46 16 2 C 0.09 2.47 5.49 -17.37 -0.10 2.37 16 3 Si 0.91 20.27 29.56 -169.99 -5.03 15.25 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 7 C -0.54 -15.49 9.53 -35.63 -0.34 -15.83 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.56 15.95 7.74 -12.99 -0.10 15.85 16 10 O -0.58 -18.82 15.05 5.19 0.08 -18.75 16 11 N -0.76 -17.40 5.54 -62.90 -0.35 -17.75 16 12 C 0.22 4.24 6.23 -5.19 -0.03 4.21 16 13 C -0.02 -0.27 6.61 -82.78 -0.55 -0.82 16 14 C -0.04 -0.47 11.50 -17.05 -0.20 -0.67 16 15 N -0.30 -3.36 3.43 -62.44 -0.21 -3.58 16 16 C 0.16 0.92 6.90 -5.19 -0.04 0.88 16 17 C -0.17 -1.06 9.36 -36.06 -0.34 -1.40 16 18 C -0.07 -0.42 10.43 28.97 0.30 -0.12 16 19 Cl -0.08 -0.60 29.10 -51.86 -1.51 -2.11 16 20 N -0.09 -1.31 12.93 60.35 0.78 -0.53 16 21 N -0.25 -4.53 12.41 33.29 0.41 -4.12 16 22 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 23 H 0.38 7.97 8.44 -40.82 -0.34 7.63 16 24 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.12 0.34 8.07 -51.93 -0.42 -0.08 16 28 H 0.11 0.45 7.79 -51.93 -0.40 0.04 16 29 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.15 0.56 7.84 -52.49 -0.41 0.15 16 LS Contribution 295.69 15.07 4.46 4.46 Total: -1.00 -37.10 295.69 -4.91 -42.01 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -2.82 Total: 3.10 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.38 Total: 4.47 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 1.29 Total: -48.43 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.08 Total: -18.75 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.51 Total: -2.11 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -37.10 -4.91 -42.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330801658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.002 kcal (2) G-P(sol) polarization free energy of solvation -37.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds