Wall clock time and date at job start Mon Mar 30 2020 01:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86807 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46950 * 274.98375 * 3 2 1 5 5 H 1.48500 * 109.46920 * 34.98305 * 3 2 1 6 6 H 1.48503 * 109.47020 * 154.98683 * 3 2 1 7 7 C 1.40047 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00244 * 186.15047 * 7 2 1 9 9 C 1.46373 * 120.00358 * 6.14700 * 7 2 1 10 10 O 1.21694 * 119.99643 * 353.94248 * 9 7 2 11 11 N 1.34775 * 120.00323 * 173.94235 * 9 7 2 12 12 C 1.46496 * 119.99831 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47239 * 179.97438 * 12 11 9 14 14 C 1.35345 * 126.75061 * 94.99219 * 13 12 11 15 15 N 1.35316 * 106.17501 * 179.97438 * 14 13 12 16 16 C 1.46495 * 125.86834 * 179.97438 * 15 14 13 17 17 C 1.50711 * 109.46701 * 125.00596 * 16 15 14 18 18 C 1.31159 * 119.99453 * 124.72992 * 17 16 15 19 19 Cl 1.73604 * 119.99733 * 180.27852 * 18 17 16 20 20 N 1.28710 * 108.26239 * 0.26969 * 15 14 13 21 21 N 1.28636 * 110.17650 * 359.55377 * 20 15 14 22 22 H 0.96999 * 120.00208 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00007 * 359.97438 * 11 9 7 24 24 H 1.08997 * 109.47835 * 59.99696 * 12 11 9 25 25 H 1.09006 * 109.47430 * 299.99797 * 12 11 9 26 26 H 1.07997 * 126.91548 * 359.97270 * 14 13 12 27 27 H 1.08999 * 109.47465 * 5.01365 * 16 15 14 28 28 H 1.08992 * 109.47523 * 245.00656 * 16 15 14 29 29 H 1.07992 * 119.99687 * 304.99978 * 17 16 15 30 30 H 1.07993 * 120.00275 * 0.26971 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5870 1.4121 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0997 9 6 1.2815 -2.4768 -0.1368 10 8 0.0646 -2.4827 -0.1388 11 7 1.9612 -3.6341 -0.2602 12 6 1.2351 -4.8990 -0.3971 13 6 2.2201 -6.0331 -0.5182 14 6 2.6768 -6.8195 0.4842 15 7 3.5362 -7.6957 -0.0857 16 6 4.2801 -8.7464 0.6134 17 6 3.9971 -10.0777 -0.0338 18 6 4.9878 -10.8199 -0.4672 19 17 4.6615 -12.3502 -1.2192 20 7 3.5924 -7.4433 -1.3466 21 7 2.8146 -6.4609 -1.6375 22 1 -0.4850 0.8400 0.0004 23 1 2.9312 -3.6293 -0.2590 24 1 0.6100 -4.8644 -1.2894 25 1 0.6074 -5.0545 0.4804 26 1 2.4092 -6.7598 1.5288 27 1 3.9705 -8.7772 1.6580 28 1 5.3478 -8.5346 0.5569 29 1 2.9784 -10.4185 -0.1447 30 1 6.0066 -10.4791 -0.3563 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330801658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:57 Heat of formation + Delta-G solvation = 43.197655 kcal Electronic energy + Delta-G solvation = -17053.391211 eV Core-core repulsion = 13911.325965 eV Total energy + Delta-G solvation = -3142.065246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.29834 -39.35797 -37.95976 -36.83405 -35.45363 -34.48000 -33.47717 -32.18398 -28.99794 -28.07530 -26.77822 -23.17033 -22.66889 -21.70258 -21.23133 -19.40768 -18.34522 -17.55997 -17.34071 -16.72061 -16.23955 -15.96414 -15.91340 -15.18859 -15.13832 -14.59676 -14.16008 -13.63357 -13.39568 -13.27422 -13.15679 -13.03242 -12.77111 -12.61724 -12.53120 -11.98372 -11.90597 -11.85021 -11.17715 -10.91193 -10.43847 -10.25093 -9.79038 -9.48869 -8.27941 -6.82794 0.47089 0.63179 1.24414 1.34433 1.42933 1.44039 1.59641 1.68163 2.27943 2.49205 3.17024 3.36885 3.58496 3.68313 3.75517 3.89509 4.04649 4.18781 4.31993 4.50361 4.71425 4.93928 4.98432 5.08499 5.13183 5.34745 5.63812 5.88870 6.18464 6.27892 6.89012 7.46089 7.53175 8.49623 8.68677 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.057712 B = 0.002776 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.054927 B =10083.390499 C =10279.128959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.572 4.572 8 H 0.086 0.914 9 C 0.541 3.459 10 O -0.630 6.630 11 N -0.748 5.748 12 C 0.223 3.777 13 C -0.048 4.048 14 C -0.005 4.005 15 N -0.283 5.283 16 C 0.147 3.853 17 C -0.174 4.174 18 C -0.067 4.067 19 Cl -0.099 7.099 20 N -0.103 5.103 21 N -0.297 5.297 22 H 0.275 0.725 23 H 0.392 0.608 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.236 0.764 27 H 0.163 0.837 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.509 -20.765 5.829 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.609 4.609 8 H 0.104 0.896 9 C 0.346 3.654 10 O -0.517 6.517 11 N -0.403 5.403 12 C 0.097 3.903 13 C -0.187 4.187 14 C -0.157 4.157 15 N -0.077 5.077 16 C 0.028 3.972 17 C -0.194 4.194 18 C -0.112 4.112 19 Cl -0.071 7.071 20 N -0.082 5.082 21 N -0.164 5.164 22 H 0.085 0.915 23 H 0.225 0.775 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.253 0.747 27 H 0.181 0.819 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 13.081 -21.289 4.424 25.375 hybrid contribution -0.182 0.675 0.619 0.934 sum 12.899 -20.614 5.043 24.834 Atomic orbital electron populations 1.70179 1.09495 1.29001 1.36335 1.26963 0.95526 1.04902 0.91223 0.85003 0.78965 0.75212 0.79065 1.19110 1.19515 1.17112 1.21389 0.95127 0.90207 1.54138 0.89613 1.18574 0.86754 0.83964 0.76152 1.90557 1.16049 1.87403 1.57741 1.45815 1.09111 1.05083 1.80268 1.18901 0.90778 0.79914 1.00677 1.21933 1.04312 1.01927 0.90486 1.23946 0.96099 0.93088 1.02591 1.47704 1.29604 1.23972 1.06371 1.21482 0.98429 0.79896 0.97359 1.23044 1.00162 0.95291 1.00909 1.24806 1.01895 0.87528 0.96968 1.98404 1.96085 1.31857 1.80724 1.78213 1.19307 1.13448 0.97214 1.75076 1.07799 1.06996 1.26565 0.91493 0.77533 0.94374 0.90699 0.74749 0.81923 0.85193 0.86271 0.80459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.49 11.85 21.83 0.26 -50.23 16 2 C 0.03 1.63 5.49 85.30 0.47 2.10 16 3 Si 1.00 41.19 29.56 68.60 2.03 43.22 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.57 -32.75 9.53 24.83 0.24 -32.51 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.54 31.79 7.74 86.36 0.67 32.46 16 10 O -0.63 -42.48 15.05 -4.33 -0.07 -42.55 16 11 N -0.75 -34.69 5.54 -471.14 -2.61 -37.30 16 12 C 0.22 8.98 6.23 85.64 0.53 9.52 16 13 C -0.05 -1.56 6.61 41.60 0.28 -1.29 16 14 C -0.01 -0.11 11.50 83.49 0.96 0.85 16 15 N -0.28 -5.50 3.43 -351.48 -1.20 -6.71 16 16 C 0.15 1.11 6.90 85.64 0.59 1.70 16 17 C -0.17 -1.76 9.36 25.49 0.24 -1.52 16 18 C -0.07 -0.63 10.43 67.62 0.71 0.08 16 19 Cl -0.10 -1.37 29.10 -2.72 -0.08 -1.45 16 20 N -0.10 -2.99 12.93 37.02 0.48 -2.51 16 21 N -0.30 -10.68 12.41 -48.60 -0.60 -11.28 16 22 H 0.28 15.27 8.29 -92.71 -0.77 14.50 16 23 H 0.39 16.35 8.44 -92.71 -0.78 15.56 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 26 H 0.24 2.81 8.06 -2.91 -0.02 2.79 16 27 H 0.16 -0.03 8.07 -2.39 -0.02 -0.05 16 28 H 0.13 0.46 7.79 -2.39 -0.02 0.44 16 29 H 0.12 1.53 8.06 -2.91 -0.02 1.50 16 30 H 0.18 0.70 7.84 -2.91 -0.02 0.67 16 Total: -1.00 -84.95 295.69 3.28 -81.67 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.40 Total: 15.76 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 4.68 Total: 11.38 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -3.68 Total: -108.03 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.07 Total: -42.55 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -84.95 3.28 -81.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330801658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.872 kcal (2) G-P(sol) polarization free energy of solvation -84.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds