Wall clock time and date at job start Mon Mar 30 2020 01:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.35349 * 126.75364 * 94.71254 * 13 12 11 15 15 N 1.35313 * 106.17218 * 179.85517 * 14 13 12 16 16 C 1.46502 * 125.86779 * 180.12213 * 15 14 13 17 17 C 1.50694 * 109.47544 * 125.32174 * 16 15 14 18 18 C 1.31157 * 120.00021 * 125.00044 * 17 16 15 19 19 Cl 1.73597 * 119.99911 * 359.97438 * 18 17 16 20 20 N 1.28710 * 108.26491 * 0.41269 * 15 14 13 21 21 N 1.28635 * 110.18134 * 359.73681 * 20 15 14 22 22 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 23 23 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 24 24 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 25 25 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 26 26 H 1.08001 * 126.90852 * 0.02562 * 14 13 12 27 27 H 1.09004 * 109.47088 * 245.32712 * 16 15 14 28 28 H 1.09003 * 109.47096 * 5.31471 * 16 15 14 29 29 H 1.08004 * 119.99748 * 304.99922 * 17 16 15 30 30 H 1.08003 * 120.00010 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 6 2.6529 -6.7348 1.0848 15 7 3.5040 -7.6745 0.6122 16 6 4.2428 -8.6479 1.4204 17 6 3.9542 -10.0394 0.9191 18 6 4.9421 -10.8300 0.5738 19 17 6.5820 -10.2732 0.6936 20 7 3.5578 -7.5624 -0.6688 21 7 2.7890 -6.6096 -1.0636 22 1 -0.4851 0.8400 -0.0004 23 1 2.9191 -3.6476 0.0027 24 1 0.5889 -4.9739 0.8903 25 1 0.5910 -4.9743 -0.8897 26 1 2.3888 -6.5590 2.1172 27 1 5.3115 -8.4480 1.3429 28 1 3.9325 -8.5652 2.4621 29 1 2.9339 -10.3856 0.8443 30 1 4.7353 -11.8274 0.2149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330801659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:58 Heat of formation + Delta-G solvation = 74.437219 kcal Electronic energy + Delta-G solvation = -17188.900123 eV Core-core repulsion = 14048.189526 eV Total energy + Delta-G solvation = -3140.710597 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.17863 -37.64181 -37.22962 -35.81374 -33.73180 -32.63538 -32.28139 -30.69155 -27.60897 -26.93208 -25.00898 -22.22791 -21.46381 -20.44417 -19.62956 -17.84106 -17.05140 -16.54031 -16.21354 -15.30425 -14.86679 -14.80465 -14.40852 -13.91856 -13.44948 -13.37821 -12.78333 -12.64871 -12.49260 -12.09229 -11.60579 -11.34211 -11.30320 -11.11520 -10.93901 -10.60686 -10.42382 -10.20529 -10.07524 -9.75721 -9.18130 -8.81573 -7.57469 -7.47545 -6.14957 -4.59963 1.07108 1.61133 1.74397 2.41934 2.64126 3.17661 3.24265 3.27681 3.94013 4.15002 4.19100 4.51967 4.60053 4.63959 4.95398 4.97269 5.17318 5.29273 5.40632 5.47073 5.62251 5.86269 6.12464 6.45025 6.52590 6.57221 7.47467 7.95817 8.10814 8.36950 8.62571 9.06349 9.56374 10.63383 10.81724 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.039866 B = 0.003111 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.178097 B = 8998.769016 C = 9447.519728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.581 6.581 11 N -0.761 5.761 12 C 0.216 3.784 13 C -0.017 4.017 14 C -0.041 4.041 15 N -0.296 5.296 16 C 0.136 3.864 17 C -0.164 4.164 18 C -0.073 4.073 19 Cl -0.082 7.082 20 N -0.085 5.085 21 N -0.254 5.254 22 H 0.268 0.732 23 H 0.381 0.619 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.192 0.808 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.145 0.855 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.465 -20.764 6.197 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.418 5.418 12 C 0.090 3.910 13 C -0.155 4.155 14 C -0.191 4.191 15 N -0.089 5.089 16 C 0.015 3.985 17 C -0.184 4.184 18 C -0.118 4.118 19 Cl -0.054 7.054 20 N -0.065 5.065 21 N -0.122 5.122 22 H 0.079 0.921 23 H 0.212 0.788 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.209 0.791 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.162 0.838 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.134 -21.172 4.922 23.983 hybrid contribution 0.617 0.997 1.122 1.623 sum 10.751 -20.176 6.044 23.647 Atomic orbital electron populations 1.70018 1.07031 1.27233 1.35436 1.25700 0.94617 1.00249 0.92630 0.86373 0.80105 0.81403 0.78856 1.19727 1.20487 1.18961 1.20866 0.93590 0.89297 1.54304 0.91454 1.18210 0.87178 0.82228 0.76297 1.90600 1.14026 1.86719 1.54997 1.46161 1.08664 1.04123 1.82835 1.19057 0.90242 0.79674 1.02069 1.22371 1.02924 1.01463 0.88744 1.23499 0.98520 0.94951 1.02169 1.47272 1.30718 1.24149 1.06785 1.21241 0.98377 0.84264 0.94589 1.23108 0.99919 0.94504 1.00824 1.24647 0.84585 1.01173 1.01402 1.98390 1.21328 1.89376 1.96324 1.78315 1.19227 1.16543 0.92376 1.75145 1.06587 1.04259 1.26160 0.92122 0.78769 0.91482 0.91414 0.79098 0.87051 0.86239 0.83751 0.82426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.24 11.83 55.55 0.66 -22.58 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.38 29.56 -169.99 -5.02 15.36 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -15.60 9.54 -35.64 -0.34 -15.94 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.56 16.07 7.75 -12.99 -0.10 15.97 16 10 O -0.58 -18.91 15.02 5.20 0.08 -18.83 16 11 N -0.76 -17.64 5.54 -62.90 -0.35 -17.99 16 12 C 0.22 4.30 6.23 -5.20 -0.03 4.27 16 13 C -0.02 -0.29 6.61 -82.78 -0.55 -0.84 16 14 C -0.04 -0.52 11.50 -17.05 -0.20 -0.72 16 15 N -0.30 -3.55 3.43 -62.44 -0.21 -3.77 16 16 C 0.14 1.01 6.75 -5.20 -0.04 0.97 16 17 C -0.16 -1.03 9.64 -36.07 -0.35 -1.38 16 18 C -0.07 -0.42 10.82 28.97 0.31 -0.10 16 19 Cl -0.08 -0.60 26.96 -51.86 -1.40 -2.00 16 20 N -0.09 -1.35 12.92 60.35 0.78 -0.57 16 21 N -0.25 -4.65 12.41 33.29 0.41 -4.24 16 22 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 23 H 0.38 8.13 8.44 -40.82 -0.34 7.79 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 26 H 0.19 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.11 0.84 6.01 -51.93 -0.31 0.53 16 28 H 0.12 0.51 8.07 -51.93 -0.42 0.09 16 29 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 30 H 0.16 0.55 8.06 -52.48 -0.42 0.12 16 LS Contribution 292.46 15.07 4.41 4.41 Total: -1.00 -37.00 292.46 -4.77 -41.77 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -2.74 Total: 3.82 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.38 Total: 4.62 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 1.29 Total: -49.14 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.08 Total: -18.83 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.40 Total: -2.00 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -37.00 -4.77 -41.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330801659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.204 kcal (2) G-P(sol) polarization free energy of solvation -36.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds