Wall clock time and date at job start Mon Mar 30 2020 01:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.35349 * 126.75364 * 94.71254 * 13 12 11 15 15 N 1.35313 * 106.17218 * 179.85517 * 14 13 12 16 16 C 1.46502 * 125.86779 * 180.12213 * 15 14 13 17 17 C 1.50694 * 109.47544 * 125.32174 * 16 15 14 18 18 C 1.31157 * 120.00021 * 125.00044 * 17 16 15 19 19 Cl 1.73597 * 119.99911 * 359.97438 * 18 17 16 20 20 N 1.28710 * 108.26491 * 0.41269 * 15 14 13 21 21 N 1.28635 * 110.18134 * 359.73681 * 20 15 14 22 22 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 23 23 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 24 24 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 25 25 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 26 26 H 1.08001 * 126.90852 * 0.02562 * 14 13 12 27 27 H 1.09004 * 109.47088 * 245.32712 * 16 15 14 28 28 H 1.09003 * 109.47096 * 5.31471 * 16 15 14 29 29 H 1.08004 * 119.99748 * 304.99922 * 17 16 15 30 30 H 1.08003 * 120.00010 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 6 2.6529 -6.7348 1.0848 15 7 3.5040 -7.6745 0.6122 16 6 4.2428 -8.6479 1.4204 17 6 3.9542 -10.0394 0.9191 18 6 4.9421 -10.8300 0.5738 19 17 6.5820 -10.2732 0.6936 20 7 3.5578 -7.5624 -0.6688 21 7 2.7890 -6.6096 -1.0636 22 1 -0.4851 0.8400 -0.0004 23 1 2.9191 -3.6476 0.0027 24 1 0.5889 -4.9739 0.8903 25 1 0.5910 -4.9743 -0.8897 26 1 2.3888 -6.5590 2.1172 27 1 5.3115 -8.4480 1.3429 28 1 3.9325 -8.5652 2.4621 29 1 2.9339 -10.3856 0.8443 30 1 4.7353 -11.8274 0.2149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330801659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:58 Heat of formation + Delta-G solvation = 45.834075 kcal Electronic energy + Delta-G solvation = -17190.140449 eV Core-core repulsion = 14048.189526 eV Total energy + Delta-G solvation = -3141.950922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.30652 -39.36069 -38.15383 -36.65219 -35.42829 -34.47523 -33.46242 -32.18742 -29.01073 -28.20860 -26.78067 -23.20618 -22.68184 -21.69490 -21.08664 -19.41285 -18.40975 -17.58131 -17.35032 -16.75871 -16.26715 -15.96221 -15.91995 -15.35749 -15.13679 -14.59190 -14.12671 -13.61889 -13.38827 -13.22025 -13.17365 -13.05804 -12.73744 -12.62897 -12.54227 -12.00169 -11.95169 -11.86160 -11.05103 -10.91392 -10.44842 -10.26848 -9.79549 -9.48987 -8.27225 -6.83789 0.50644 0.61215 1.25571 1.33228 1.42832 1.43883 1.59115 1.63620 2.27883 2.48900 3.16100 3.36587 3.45952 3.62951 3.74904 3.89007 4.09311 4.17128 4.47171 4.53710 4.70662 4.93204 4.97228 4.99284 5.11528 5.33958 5.61546 5.88388 6.17957 6.27218 6.88561 7.45715 7.52391 8.49477 8.68651 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.039866 B = 0.003111 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.178097 B = 8998.769016 C = 9447.519728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.541 3.459 10 O -0.629 6.629 11 N -0.749 5.749 12 C 0.224 3.776 13 C -0.046 4.046 14 C -0.009 4.009 15 N -0.280 5.280 16 C 0.124 3.876 17 C -0.172 4.172 18 C -0.067 4.067 19 Cl -0.099 7.099 20 N -0.101 5.101 21 N -0.296 5.296 22 H 0.275 0.725 23 H 0.391 0.609 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.235 0.765 27 H 0.111 0.889 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.239 -21.236 7.669 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.173 1.173 7 C -0.609 4.609 8 H 0.102 0.898 9 C 0.346 3.654 10 O -0.516 6.516 11 N -0.404 5.404 12 C 0.098 3.902 13 C -0.185 4.185 14 C -0.161 4.161 15 N -0.073 5.073 16 C 0.006 3.994 17 C -0.192 4.192 18 C -0.112 4.112 19 Cl -0.071 7.071 20 N -0.081 5.081 21 N -0.163 5.163 22 H 0.085 0.915 23 H 0.224 0.776 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.251 0.749 27 H 0.129 0.871 28 H 0.177 0.823 29 H 0.173 0.827 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.971 -21.720 6.392 25.611 hybrid contribution 0.099 0.973 0.708 1.207 sum 12.071 -20.747 7.100 25.031 Atomic orbital electron populations 1.70175 1.09449 1.29004 1.36346 1.26956 0.95552 1.04862 0.91207 0.85014 0.78789 0.75114 0.79319 1.18906 1.19506 1.17253 1.21397 0.94630 0.90093 1.54819 0.89753 1.18555 0.86816 0.84003 0.76043 1.90554 1.15972 1.87821 1.57266 1.45836 1.09081 1.04215 1.81259 1.18906 0.90731 0.79472 1.01100 1.21933 1.04266 1.02026 0.90258 1.23948 0.96329 0.92992 1.02783 1.47637 1.29684 1.23967 1.06017 1.21752 0.97991 0.83765 0.95921 1.23170 1.00576 0.93979 1.01464 1.24999 0.83531 1.02155 1.00546 1.98393 1.22691 1.89616 1.96351 1.78224 1.19272 1.16279 0.94281 1.75081 1.07911 1.05604 1.27715 0.91476 0.77626 0.90687 0.94169 0.74913 0.87080 0.82350 0.82704 0.80123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.61 11.83 21.83 0.26 -50.35 16 2 C 0.03 1.66 5.50 85.30 0.47 2.13 16 3 Si 1.00 41.44 29.56 68.60 2.03 43.47 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 7 C -0.57 -33.11 9.54 24.83 0.24 -32.88 16 8 H 0.08 4.42 7.85 -2.91 -0.02 4.39 16 9 C 0.54 32.05 7.75 86.36 0.67 32.72 16 10 O -0.63 -42.53 15.02 -4.30 -0.06 -42.60 16 11 N -0.75 -35.24 5.54 -471.14 -2.61 -37.86 16 12 C 0.22 9.10 6.23 85.63 0.53 9.63 16 13 C -0.05 -1.54 6.61 41.59 0.28 -1.26 16 14 C -0.01 -0.20 11.50 83.49 0.96 0.77 16 15 N -0.28 -6.03 3.43 -351.46 -1.21 -7.23 16 16 C 0.12 1.44 6.75 85.63 0.58 2.02 16 17 C -0.17 -1.69 9.64 25.49 0.25 -1.45 16 18 C -0.07 -0.61 10.82 67.62 0.73 0.12 16 19 Cl -0.10 -1.28 26.96 -2.72 -0.07 -1.35 16 20 N -0.10 -3.09 12.92 37.02 0.48 -2.61 16 21 N -0.30 -10.85 12.41 -48.60 -0.60 -11.45 16 22 H 0.28 15.32 8.29 -92.71 -0.77 14.55 16 23 H 0.39 16.70 8.44 -92.71 -0.78 15.92 16 24 H 0.08 2.90 8.14 -2.38 -0.02 2.88 16 25 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.23 3.16 8.06 -2.91 -0.02 3.14 16 27 H 0.11 1.39 6.01 -2.39 -0.01 1.37 16 28 H 0.16 0.61 8.07 -2.39 -0.02 0.59 16 29 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -83.65 292.46 3.31 -80.34 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.40 Total: 17.83 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 4.70 Total: 11.81 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -3.68 Total: -109.50 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.06 Total: -42.60 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.35 kcal Total: -83.65 3.31 -80.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330801659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.171 kcal (2) G-P(sol) polarization free energy of solvation -83.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds