Wall clock time and date at job start Mon Mar 30 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47033 * 125.13085 * 3 2 1 5 5 C 1.36986 * 119.99962 * 263.10698 * 4 3 2 6 6 H 1.08002 * 120.00008 * 179.97438 * 5 4 3 7 7 C 1.38976 * 120.00004 * 0.26941 * 5 4 3 8 8 N 1.31408 * 120.00424 * 143.13478 * 7 5 4 9 9 Si 1.86806 * 119.99553 * 323.12867 * 7 5 4 10 10 H 1.48499 * 109.46816 * 96.58981 * 9 7 5 11 11 H 1.48502 * 109.46964 * 216.58513 * 9 7 5 12 12 H 1.48494 * 109.47275 * 336.58871 * 9 7 5 13 13 C 1.34773 * 120.00258 * 83.11296 * 4 3 2 14 14 O 1.21633 * 120.00266 * 180.90304 * 13 4 3 15 15 C 1.47362 * 119.99818 * 0.89616 * 13 4 3 16 16 C 1.41318 * 126.41905 * 349.24330 * 15 13 4 17 17 N 1.30444 * 108.02271 * 179.85360 * 16 15 13 18 18 N 1.39936 * 108.91619 * 0.40699 * 17 16 15 19 19 C 1.46498 * 125.75155 * 179.69795 * 18 17 16 20 20 F 1.39897 * 109.47012 * 30.04713 * 19 18 17 21 21 F 1.39901 * 109.47028 * 150.04349 * 19 18 17 22 22 C 1.34285 * 108.49725 * 359.73861 * 18 17 16 23 23 H 1.08998 * 109.47001 * 5.12729 * 3 2 1 24 24 H 1.09003 * 109.46725 * 245.13119 * 3 2 1 25 25 H 0.96999 * 120.00421 * 179.97438 * 8 7 5 26 26 H 1.07998 * 125.98689 * 0.02562 * 16 15 13 27 27 H 1.08996 * 109.47282 * 270.04232 * 19 18 17 28 28 H 1.07997 * 126.30043 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0960 0.7956 -1.1295 5 6 3.4588 0.1769 -2.2966 6 1 3.8181 0.7630 -3.1295 7 6 3.3587 -1.2046 -2.4109 8 7 2.9894 -1.7446 -3.5506 9 14 3.7494 -2.2938 -0.9444 10 1 2.4899 -2.6495 -0.2427 11 1 4.4217 -3.5322 -1.4129 12 1 4.6468 -1.5655 -0.0121 13 6 3.1881 2.1358 -1.0206 14 8 3.5776 2.7974 -1.9640 15 6 2.8166 2.7996 0.2416 16 6 2.1547 2.2047 1.3392 17 7 2.0086 3.1136 2.2634 18 7 2.5533 4.3183 1.8049 19 6 2.5815 5.5818 2.5459 20 9 2.6431 5.3163 3.9181 21 9 3.7055 6.3217 2.1633 22 6 3.0449 4.1213 0.5709 23 1 2.9718 -1.0227 -0.0918 24 1 2.9711 0.4330 0.9324 25 1 2.9198 -2.7087 -3.6305 26 1 1.8295 1.1768 1.4030 27 1 1.6791 6.1521 2.3262 28 1 3.5300 4.8602 -0.0495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331866547.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:00 Heat of formation + Delta-G solvation = 25.892848 kcal Electronic energy + Delta-G solvation = -20275.718293 eV Core-core repulsion = 16581.105974 eV Total energy + Delta-G solvation = -3694.612319 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.35096 -48.47341 -42.66222 -40.49614 -38.21779 -36.57077 -34.56290 -33.75064 -31.53944 -29.97823 -28.12069 -26.55107 -23.58067 -22.72197 -21.03754 -20.37795 -19.55448 -19.10207 -18.90096 -18.49013 -17.93360 -17.22374 -16.49725 -16.09379 -15.81862 -15.31484 -15.24599 -15.11907 -14.82393 -14.64378 -14.51571 -14.46229 -14.07900 -13.69587 -13.64871 -13.41317 -13.27720 -12.57520 -12.45358 -12.39601 -11.34028 -11.23682 -10.99761 -10.64922 -10.22078 -10.02247 -8.62315 -5.95994 0.24081 0.67859 0.88064 1.13292 1.28007 1.37135 1.40737 1.54842 2.09012 2.22101 2.48193 2.53543 2.67195 2.89527 3.12821 3.52858 3.56323 3.57920 3.62844 3.82936 3.98507 4.20511 4.43588 4.99284 5.34688 5.40809 5.97186 6.15431 6.21900 6.32663 6.81785 7.17069 7.71093 8.52198 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.030557 B = 0.005723 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.114962 B = 4891.715218 C = 5274.708151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.203 3.797 3 C 0.169 3.831 4 N -0.449 5.449 5 C -0.363 4.363 6 H 0.076 0.924 7 C 0.017 3.983 8 N -0.872 5.872 9 Si 0.911 3.089 10 H -0.246 1.246 11 H -0.280 1.280 12 H -0.220 1.220 13 C 0.531 3.469 14 O -0.606 6.606 15 C -0.278 4.278 16 C 0.060 3.940 17 N -0.281 5.281 18 N -0.427 5.427 19 C 0.508 3.492 20 F -0.181 7.181 21 F -0.180 7.180 22 C 0.149 3.851 23 H 0.098 0.902 24 H 0.172 0.828 25 H 0.285 0.715 26 H 0.209 0.791 27 H 0.210 0.790 28 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.375 9.831 15.868 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.116 4.116 3 C 0.043 3.957 4 N -0.168 5.168 5 C -0.488 4.488 6 H 0.093 0.907 7 C -0.189 4.189 8 N -0.507 5.507 9 Si 0.735 3.265 10 H -0.172 1.172 11 H -0.207 1.207 12 H -0.143 1.143 13 C 0.323 3.677 14 O -0.492 6.492 15 C -0.292 4.292 16 C -0.128 4.128 17 N -0.100 5.100 18 N -0.217 5.217 19 C 0.377 3.623 20 F -0.163 7.163 21 F -0.161 7.161 22 C 0.001 3.999 23 H 0.115 0.885 24 H 0.188 0.812 25 H 0.095 0.905 26 H 0.225 0.775 27 H 0.226 0.774 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.549 10.438 16.528 19.609 hybrid contribution 1.120 -1.064 -1.078 1.884 sum -0.429 9.374 15.450 18.076 Atomic orbital electron populations 1.81097 1.13325 1.08674 1.07998 1.29820 0.95814 0.92898 0.93082 1.20258 0.80833 0.99820 0.94767 1.43382 1.56274 1.05008 1.12110 1.18786 1.47614 0.91698 0.90743 0.90651 1.25932 0.94676 0.97807 1.00496 1.70068 1.36930 1.13664 1.30000 0.86325 0.81009 0.78896 0.80281 1.17223 1.20719 1.14343 1.17233 0.82358 0.81062 0.87083 1.90630 1.52948 1.64066 1.41532 1.20347 1.15476 0.95712 0.97697 1.25161 0.96912 1.00300 0.90453 1.77216 1.20459 0.89671 1.22611 1.50078 1.47184 1.10952 1.13477 1.22192 0.89915 0.77358 0.72845 1.93112 1.97060 1.93970 1.32125 1.93148 1.56941 1.75183 1.90839 1.23112 0.93617 0.96916 0.86212 0.88542 0.81171 0.90538 0.77510 0.77355 0.76698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -17.20 18.54 20.01 0.37 -16.83 15 2 C 0.20 7.60 12.87 89.44 1.15 8.76 15 3 C 0.17 6.04 4.37 84.58 0.37 6.41 15 4 N -0.45 -20.55 2.59 -649.20 -1.68 -22.23 15 5 C -0.36 -19.84 9.81 84.06 0.82 -19.02 15 6 H 0.08 4.81 7.38 -2.91 -0.02 4.79 15 7 C 0.02 0.87 5.31 84.93 0.45 1.33 15 8 N -0.87 -48.67 13.96 21.67 0.30 -48.37 15 9 Si 0.91 35.27 24.67 68.60 1.69 36.96 15 10 H -0.25 -8.58 7.00 99.48 0.70 -7.88 15 11 H -0.28 -10.88 7.11 99.48 0.71 -10.18 15 12 H -0.22 -7.30 6.95 99.48 0.69 -6.61 15 13 C 0.53 23.83 7.54 86.65 0.65 24.49 15 14 O -0.61 -31.96 16.49 -4.14 -0.07 -32.02 15 15 C -0.28 -9.47 5.94 -20.15 -0.12 -9.59 15 16 C 0.06 1.79 9.26 85.66 0.79 2.59 15 17 N -0.28 -7.79 12.32 -56.26 -0.69 -8.48 15 18 N -0.43 -9.89 3.94 -362.96 -1.43 -11.32 15 19 C 0.51 7.32 6.62 127.77 0.85 8.16 15 20 F -0.18 -3.31 17.35 44.97 0.78 -2.53 15 21 F -0.18 -2.76 17.00 44.97 0.76 -2.00 15 22 C 0.15 4.00 10.86 84.29 0.92 4.91 15 23 H 0.10 3.48 0.84 -2.39 0.00 3.48 15 24 H 0.17 4.55 4.87 -2.39 -0.01 4.54 15 25 H 0.28 14.43 8.31 -92.71 -0.77 13.66 15 26 H 0.21 5.74 3.30 -2.91 -0.01 5.73 15 27 H 0.21 0.93 8.14 -2.39 -0.02 0.91 15 28 H 0.22 4.77 8.06 -2.91 -0.02 4.74 15 Total: -1.00 -72.75 261.41 7.16 -65.60 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.24 Total: 13.19 kcal Atomic # 6 Polarization: 22.14 SS G_CDS: 5.88 Total: 28.03 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -3.13 Total: -107.23 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.07 Total: -32.02 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 1.54 Total: -4.53 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 1.69 Total: 36.96 kcal Total: -72.75 7.16 -65.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331866547.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.489 kcal (2) G-P(sol) polarization free energy of solvation -72.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds