Wall clock time and date at job start Mon Mar 30 2020 01:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47371 * 33.73609 * 3 2 1 5 5 C 1.36916 * 120.00084 * 265.25837 * 4 3 2 6 6 H 1.07996 * 119.99663 * 141.18950 * 5 4 3 7 7 C 1.39020 * 119.99720 * 321.45570 * 5 4 3 8 8 N 1.31382 * 119.99371 * 160.23166 * 7 5 4 9 9 Si 1.86794 * 120.00357 * 340.23745 * 7 5 4 10 10 H 1.48500 * 109.47106 * 92.97227 * 9 7 5 11 11 H 1.48500 * 109.47046 * 212.96904 * 9 7 5 12 12 H 1.48498 * 109.47289 * 332.97375 * 9 7 5 13 13 C 1.34779 * 120.00289 * 85.26111 * 4 3 2 14 14 O 1.21601 * 120.00395 * 175.70732 * 13 4 3 15 15 C 1.47618 * 119.99507 * 355.70179 * 13 4 3 16 16 C 1.41550 * 126.52113 * 173.98096 * 15 13 4 17 17 C 1.35341 * 105.49985 * 179.87972 * 16 15 13 18 18 C 1.50698 * 126.37948 * 180.10595 * 17 16 15 19 19 F 1.39900 * 109.47283 * 210.29629 * 18 17 16 20 20 F 1.39898 * 109.47012 * 330.30026 * 18 17 16 21 21 N 1.35054 * 107.24459 * 0.38113 * 17 16 15 22 22 H 0.96999 * 124.88061 * 179.77359 * 21 17 16 23 23 N 1.28469 * 110.23547 * 359.74707 * 21 17 16 24 24 H 1.08998 * 109.47191 * 273.73379 * 3 2 1 25 25 H 1.08997 * 109.47201 * 153.73473 * 3 2 1 26 26 H 0.97000 * 119.99668 * 180.02562 * 8 7 5 27 27 H 1.08000 * 127.24662 * 0.02562 * 16 15 13 28 28 H 1.09001 * 109.47361 * 90.29995 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0968 -1.1477 -0.7671 5 6 3.4180 -2.3134 -0.1247 6 1 3.1761 -3.2636 -0.5773 7 6 4.0505 -2.2736 1.1127 8 7 4.0153 -3.3231 1.9022 9 14 4.9500 -0.7282 1.6527 10 1 4.0307 0.1287 2.4438 11 1 6.1194 -1.1024 2.4879 12 1 5.4149 0.0178 0.4558 13 6 3.2306 -1.0568 -2.1051 14 8 3.7095 -1.9818 -2.7326 15 6 2.7955 0.1658 -2.8089 16 6 2.9781 0.4575 -4.1819 17 6 2.4195 1.6758 -4.3701 18 6 2.3499 2.4361 -5.6694 19 9 2.3667 3.8102 -5.4072 20 9 3.4497 2.0998 -6.4659 21 7 1.9415 2.0860 -3.1755 22 1 1.4915 2.9308 -3.0186 23 7 2.1680 1.1962 -2.2770 24 1 2.9713 -0.0661 1.0255 25 1 2.9709 0.9224 -0.4548 26 1 4.4563 -3.2953 2.7658 27 1 3.4595 -0.1626 -4.9235 28 1 1.4295 2.1774 -6.1929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333994004.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:53 Heat of formation + Delta-G solvation = -2.171495 kcal Electronic energy + Delta-G solvation = -20212.907654 eV Core-core repulsion = 16517.078374 eV Total energy + Delta-G solvation = -3695.829280 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.37510 -47.40092 -42.67793 -38.82550 -36.16614 -34.69394 -32.54297 -31.84853 -31.66446 -27.76651 -26.47654 -25.75600 -22.83147 -21.41980 -19.45333 -18.69026 -18.40450 -17.92945 -17.35478 -16.88929 -16.51174 -15.64059 -15.48905 -14.93739 -14.23978 -14.03384 -13.87582 -13.78452 -13.66406 -13.46069 -13.16745 -12.87581 -12.51703 -12.27363 -11.86325 -11.77229 -11.53929 -10.98539 -10.86812 -10.32668 -10.06278 -9.45038 -9.31253 -9.25136 -8.99550 -8.11791 -6.56746 -4.18839 1.55267 2.06092 2.57785 2.90302 3.10404 3.15522 3.17234 3.34774 3.42944 3.75634 3.94159 3.98808 4.24324 4.28631 4.50519 4.58865 4.74359 5.01063 5.32533 5.47670 5.63408 5.72947 5.86464 6.32606 6.79770 7.31172 7.76968 8.03254 8.14938 8.27553 8.70009 9.04495 9.45742 10.53803 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.027320 B = 0.005793 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.650792 B = 4832.168632 C = 5116.334138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.227 3.773 3 C 0.178 3.822 4 N -0.442 5.442 5 C -0.321 4.321 6 H 0.114 0.886 7 C 0.065 3.935 8 N -0.848 5.848 9 Si 0.865 3.135 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.254 1.254 13 C 0.545 3.455 14 O -0.537 6.537 15 C 0.013 3.987 16 C -0.131 4.131 17 C -0.081 4.081 18 C 0.354 3.646 19 F -0.201 7.201 20 F -0.185 7.185 21 N -0.369 5.369 22 H 0.446 0.554 23 N -0.252 5.252 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.279 0.721 27 H 0.171 0.829 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 14.326 -10.127 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.092 4.092 3 C 0.051 3.949 4 N -0.164 5.164 5 C -0.448 4.448 6 H 0.131 0.869 7 C -0.143 4.143 8 N -0.483 5.483 9 Si 0.691 3.309 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.178 1.178 13 C 0.332 3.668 14 O -0.414 6.414 15 C -0.147 4.147 16 C -0.160 4.160 17 C -0.208 4.208 18 C 0.298 3.702 19 F -0.183 7.183 20 F -0.166 7.166 21 N -0.084 5.084 22 H 0.290 0.710 23 N -0.088 5.088 24 H 0.127 0.873 25 H 0.138 0.862 26 H 0.090 0.910 27 H 0.188 0.812 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.588 14.082 -9.281 17.243 hybrid contribution 1.041 1.017 -0.145 1.463 sum -2.547 15.099 -9.425 17.981 Atomic orbital electron populations 1.80987 1.13160 1.09267 1.09711 1.29606 0.95418 0.92121 0.92077 1.19688 0.81707 0.93387 1.00104 1.43449 1.55885 1.12347 1.04678 1.19116 1.38740 0.84783 1.02133 0.86890 1.25413 0.95697 0.97574 0.95663 1.69695 1.39220 1.30344 1.09007 0.87131 0.80638 0.83299 0.79835 1.19430 1.20417 1.17813 1.16853 0.82574 0.84945 0.82434 1.90708 1.46833 1.38453 1.65429 1.22644 1.02722 0.95781 0.93560 1.21552 1.02869 0.94962 0.96609 1.21728 1.09805 0.99095 0.90151 1.19646 0.89400 0.74891 0.86253 1.93014 1.97209 1.33234 1.94799 1.93056 1.57307 1.91992 1.74215 1.43183 1.43524 1.17618 1.04057 0.70965 1.73868 1.17618 0.99818 1.17514 0.87307 0.86191 0.91030 0.81188 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.59 18.54 42.15 0.78 -8.80 15 2 C 0.23 4.60 14.22 -20.76 -0.30 4.30 15 3 C 0.18 3.52 4.11 -6.83 -0.03 3.49 15 4 N -0.44 -10.34 2.14 -119.09 -0.25 -10.60 15 5 C -0.32 -8.58 9.33 -14.99 -0.14 -8.72 15 6 H 0.11 3.39 7.97 -52.49 -0.42 2.97 15 7 C 0.06 1.68 5.31 -17.45 -0.09 1.59 15 8 N -0.85 -23.12 13.96 55.50 0.77 -22.35 15 9 Si 0.86 18.51 25.00 -169.99 -4.25 14.26 15 10 H -0.27 -5.20 6.60 56.52 0.37 -4.82 15 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 12 H -0.25 -5.31 7.11 56.52 0.40 -4.91 15 13 C 0.55 12.49 7.58 -12.43 -0.09 12.39 15 14 O -0.54 -13.87 16.85 5.28 0.09 -13.78 15 15 C 0.01 0.24 6.72 -82.77 -0.56 -0.31 15 16 C -0.13 -1.98 10.41 -39.35 -0.41 -2.39 15 17 C -0.08 -0.95 6.84 -82.21 -0.56 -1.52 15 18 C 0.35 2.97 5.83 36.00 0.21 3.18 15 19 F -0.20 -1.80 17.30 2.25 0.04 -1.76 15 20 F -0.18 -1.91 17.05 2.25 0.04 -1.87 15 21 N -0.37 -4.40 6.79 33.50 0.23 -4.18 15 22 H 0.45 3.68 8.96 -190.44 -1.71 1.98 15 23 N -0.25 -4.01 7.85 33.42 0.26 -3.75 15 24 H 0.11 2.16 3.39 -51.93 -0.18 1.98 15 25 H 0.12 2.06 5.81 -51.93 -0.30 1.76 15 26 H 0.28 6.98 8.31 -40.82 -0.34 6.64 15 27 H 0.17 2.40 8.06 -52.49 -0.42 1.97 15 28 H 0.13 0.62 8.14 -51.93 -0.42 0.20 15 LS Contribution 267.28 15.07 4.03 4.03 Total: -1.00 -31.73 267.28 -2.84 -34.58 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -2.61 Total: 2.20 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: -1.97 Total: 12.02 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 1.79 Total: -49.68 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -4.25 Total: 14.26 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.73 -2.84 -34.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333994004.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.404 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds