Wall clock time and date at job start Mon Mar 30 2020 01:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47371 * 33.73609 * 3 2 1 5 5 C 1.36916 * 120.00084 * 265.25837 * 4 3 2 6 6 H 1.07996 * 119.99663 * 141.18950 * 5 4 3 7 7 C 1.39020 * 119.99720 * 321.45570 * 5 4 3 8 8 N 1.31382 * 119.99371 * 160.23166 * 7 5 4 9 9 Si 1.86794 * 120.00357 * 340.23745 * 7 5 4 10 10 H 1.48500 * 109.47106 * 92.97227 * 9 7 5 11 11 H 1.48500 * 109.47046 * 212.96904 * 9 7 5 12 12 H 1.48498 * 109.47289 * 332.97375 * 9 7 5 13 13 C 1.34779 * 120.00289 * 85.26111 * 4 3 2 14 14 O 1.21601 * 120.00395 * 175.70732 * 13 4 3 15 15 C 1.47618 * 119.99507 * 355.70179 * 13 4 3 16 16 C 1.41550 * 126.52113 * 173.98096 * 15 13 4 17 17 C 1.35341 * 105.49985 * 179.87972 * 16 15 13 18 18 C 1.50698 * 126.37948 * 180.10595 * 17 16 15 19 19 F 1.39900 * 109.47283 * 210.29629 * 18 17 16 20 20 F 1.39898 * 109.47012 * 330.30026 * 18 17 16 21 21 N 1.35054 * 107.24459 * 0.38113 * 17 16 15 22 22 H 0.96999 * 124.88061 * 179.77359 * 21 17 16 23 23 N 1.28469 * 110.23547 * 359.74707 * 21 17 16 24 24 H 1.08998 * 109.47191 * 273.73379 * 3 2 1 25 25 H 1.08997 * 109.47201 * 153.73473 * 3 2 1 26 26 H 0.97000 * 119.99668 * 180.02562 * 8 7 5 27 27 H 1.08000 * 127.24662 * 0.02562 * 16 15 13 28 28 H 1.09001 * 109.47361 * 90.29995 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0968 -1.1477 -0.7671 5 6 3.4180 -2.3134 -0.1247 6 1 3.1761 -3.2636 -0.5773 7 6 4.0505 -2.2736 1.1127 8 7 4.0153 -3.3231 1.9022 9 14 4.9500 -0.7282 1.6527 10 1 4.0307 0.1287 2.4438 11 1 6.1194 -1.1024 2.4879 12 1 5.4149 0.0178 0.4558 13 6 3.2306 -1.0568 -2.1051 14 8 3.7095 -1.9818 -2.7326 15 6 2.7955 0.1658 -2.8089 16 6 2.9781 0.4575 -4.1819 17 6 2.4195 1.6758 -4.3701 18 6 2.3499 2.4361 -5.6694 19 9 2.3667 3.8102 -5.4072 20 9 3.4497 2.0998 -6.4659 21 7 1.9415 2.0860 -3.1755 22 1 1.4915 2.9308 -3.0186 23 7 2.1680 1.1962 -2.2770 24 1 2.9713 -0.0661 1.0255 25 1 2.9709 0.9224 -0.4548 26 1 4.4563 -3.2953 2.7658 27 1 3.4595 -0.1626 -4.9235 28 1 1.4295 2.1774 -6.1929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333994004.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:53 Heat of formation + Delta-G solvation = -25.450172 kcal Electronic energy + Delta-G solvation = -20213.917093 eV Core-core repulsion = 16517.078374 eV Total energy + Delta-G solvation = -3696.838719 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.07422 -48.10623 -43.86780 -40.59630 -37.90615 -36.49132 -34.34964 -33.05797 -32.92602 -29.46683 -27.78367 -27.11156 -24.41124 -22.49761 -20.86013 -20.34505 -19.72058 -18.63695 -18.49867 -18.07232 -18.02610 -17.36294 -16.70271 -16.21921 -15.75915 -15.60263 -15.16154 -14.93752 -14.81199 -14.62648 -14.42726 -14.40079 -14.03559 -13.87050 -13.53521 -13.19282 -12.77775 -12.60450 -12.33870 -11.91786 -11.71456 -11.25881 -10.82130 -10.58571 -10.41052 -10.04013 -8.54020 -6.25163 0.36055 0.75719 1.22950 1.37465 1.49931 1.51248 1.59578 1.81088 2.17758 2.26725 2.40674 2.78999 2.85023 3.13628 3.22721 3.24788 3.56242 3.93769 4.00368 4.06589 4.29461 4.33867 4.59813 5.08704 5.42419 5.83983 5.97459 6.34357 6.52199 6.61999 6.76857 7.07231 7.59604 8.61616 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.027320 B = 0.005793 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.650792 B = 4832.168632 C = 5116.334138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.236 3.764 3 C 0.183 3.817 4 N -0.454 5.454 5 C -0.343 4.343 6 H 0.056 0.944 7 C 0.021 3.979 8 N -0.897 5.897 9 Si 0.927 3.073 10 H -0.226 1.226 11 H -0.277 1.277 12 H -0.244 1.244 13 C 0.545 3.455 14 O -0.581 6.581 15 C -0.020 4.020 16 C -0.148 4.148 17 C -0.052 4.052 18 C 0.359 3.641 19 F -0.200 7.200 20 F -0.195 7.195 21 N -0.342 5.342 22 H 0.465 0.535 23 N -0.255 5.255 24 H 0.114 0.886 25 H 0.153 0.847 26 H 0.286 0.714 27 H 0.172 0.828 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 18.288 -10.863 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.082 4.082 3 C 0.057 3.943 4 N -0.176 5.176 5 C -0.471 4.471 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.533 5.533 9 Si 0.748 3.252 10 H -0.150 1.150 11 H -0.203 1.203 12 H -0.167 1.167 13 C 0.334 3.666 14 O -0.461 6.461 15 C -0.178 4.178 16 C -0.176 4.176 17 C -0.180 4.180 18 C 0.304 3.696 19 F -0.181 7.181 20 F -0.176 7.176 21 N -0.060 5.060 22 H 0.315 0.685 23 N -0.094 5.094 24 H 0.131 0.869 25 H 0.170 0.830 26 H 0.096 0.904 27 H 0.190 0.810 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.979 18.071 -10.005 21.036 hybrid contribution 1.068 -0.204 -0.058 1.089 sum -2.911 17.868 -10.063 20.712 Atomic orbital electron populations 1.80990 1.13619 1.09785 1.10293 1.29658 0.95445 0.91591 0.91543 1.19861 0.81254 0.93013 1.00136 1.43435 1.56615 1.12342 1.05166 1.18679 1.40917 0.84501 1.02984 0.92637 1.26213 0.95536 1.01634 0.95016 1.69806 1.40368 1.33226 1.09853 0.86153 0.79642 0.79241 0.80197 1.15001 1.20345 1.16698 1.17459 0.81110 0.85813 0.82245 1.90661 1.48433 1.40567 1.66424 1.21939 1.05831 0.95216 0.94790 1.21641 1.04008 0.96608 0.95349 1.22112 1.06871 0.97873 0.91188 1.20084 0.90760 0.74286 0.84430 1.93026 1.97242 1.33127 1.94739 1.93047 1.58280 1.92083 1.74192 1.43241 1.41802 1.17382 1.03610 0.68524 1.73707 1.17320 0.99787 1.18537 0.86864 0.82983 0.90427 0.81024 0.79969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.24 18.54 20.00 0.37 -18.87 15 2 C 0.24 9.28 14.22 89.44 1.27 10.55 15 3 C 0.18 6.96 4.11 84.57 0.35 7.31 15 4 N -0.45 -21.62 2.14 -648.96 -1.39 -23.01 15 5 C -0.34 -19.35 9.33 84.09 0.78 -18.57 15 6 H 0.06 3.66 7.97 -2.91 -0.02 3.64 15 7 C 0.02 1.10 5.31 84.95 0.45 1.55 15 8 N -0.90 -50.78 13.96 21.68 0.30 -50.48 15 9 Si 0.93 37.18 25.00 68.60 1.72 38.90 15 10 H -0.23 -7.57 6.60 99.48 0.66 -6.91 15 11 H -0.28 -11.09 7.11 99.48 0.71 -10.39 15 12 H -0.24 -9.33 7.11 99.48 0.71 -8.62 15 13 C 0.54 25.58 7.58 86.72 0.66 26.23 15 14 O -0.58 -31.60 16.85 -4.04 -0.07 -31.66 15 15 C -0.02 -0.70 6.72 42.44 0.29 -0.41 15 16 C -0.15 -4.19 10.41 22.42 0.23 -3.96 15 17 C -0.05 -1.03 6.84 41.39 0.28 -0.75 15 18 C 0.36 4.37 5.83 71.24 0.42 4.78 15 19 F -0.20 -2.62 17.30 44.97 0.78 -1.84 15 20 F -0.19 -3.35 17.05 44.97 0.77 -2.58 15 21 N -0.34 -6.81 6.79 -47.93 -0.33 -7.13 15 22 H 0.47 5.44 8.96 -219.99 -1.97 3.47 15 23 N -0.26 -7.45 7.85 -48.19 -0.38 -7.82 15 24 H 0.11 4.20 3.39 -2.39 -0.01 4.19 15 25 H 0.15 4.77 5.81 -2.39 -0.01 4.76 15 26 H 0.29 14.68 8.31 -92.71 -0.77 13.91 15 27 H 0.17 4.71 8.06 -2.91 -0.02 4.69 15 28 H 0.18 0.62 8.14 -2.39 -0.02 0.60 15 Total: -1.00 -74.19 267.28 5.74 -68.45 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -0.76 Total: 9.33 kcal Atomic # 6 Polarization: 22.00 SS G_CDS: 4.73 Total: 26.73 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -1.42 Total: -107.32 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.07 Total: -31.66 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 1.54 Total: -4.42 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 1.72 Total: 38.90 kcal Total: -74.19 5.74 -68.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333994004.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.997 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds