Wall clock time and date at job start Mon Mar 30 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86810 * 119.99827 * 2 1 4 4 H 1.48499 * 109.47207 * 269.99975 * 3 2 1 5 5 H 1.48497 * 109.46756 * 30.00327 * 3 2 1 6 6 H 1.48504 * 109.46768 * 149.99796 * 3 2 1 7 7 C 1.37869 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99708 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00459 * 179.97438 * 7 2 1 10 10 S 1.81407 * 109.47222 * 179.97438 * 9 7 2 11 11 O 1.42100 * 108.57624 * 65.52004 * 10 9 7 12 12 O 1.42096 * 108.58116 * 294.49108 * 10 9 7 13 13 C 1.81401 * 101.91784 * 180.02562 * 10 9 7 14 14 C 1.50704 * 109.46874 * 180.02562 * 13 10 9 15 15 C 1.39786 * 125.89696 * 270.00050 * 14 13 10 16 16 C 1.35539 * 107.89386 * 180.02562 * 15 14 13 17 17 N 1.34715 * 107.88239 * 359.87905 * 16 15 14 18 18 N 1.30710 * 125.89023 * 89.97642 * 14 13 10 19 19 C 1.47147 * 111.00938 * 180.22194 * 17 16 15 20 20 C 1.54376 * 105.64079 * 342.81263 * 19 17 16 21 21 C 1.51418 * 141.97278 * 179.72830 * 16 15 14 22 22 H 0.97001 * 120.00636 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46743 * 60.00598 * 9 7 2 24 24 H 1.08998 * 109.47357 * 300.00212 * 9 7 2 25 25 H 1.09000 * 109.47413 * 60.00724 * 13 10 9 26 26 H 1.08993 * 109.47540 * 300.00134 * 13 10 9 27 27 H 1.07999 * 126.05304 * 0.05479 * 15 14 13 28 28 H 1.09002 * 110.22893 * 101.88068 * 19 17 16 29 29 H 1.09000 * 110.22761 * 223.75052 * 19 17 16 30 30 H 1.09000 * 110.97115 * 143.88304 * 20 19 17 31 31 H 1.09002 * 110.97310 * 267.65321 * 20 19 17 32 32 H 1.08993 * 110.49040 * 315.33607 * 21 16 15 33 33 H 1.09002 * 110.48515 * 77.97913 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1939 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 16 4.1162 -2.9043 -0.0010 11 8 3.7404 -3.5174 -1.2266 12 8 3.7412 -3.5170 1.2250 13 6 5.9145 -2.6658 -0.0009 14 6 6.5992 -4.0083 -0.0014 15 6 6.9716 -4.7389 1.1306 16 6 7.5577 -5.8867 0.7113 17 7 7.5543 -5.8848 -0.6358 18 7 6.9469 -4.6907 -1.0606 19 6 8.1736 -7.1095 -1.1667 20 6 8.9740 -7.7136 0.0069 21 6 8.2084 -7.1521 1.2293 22 1 -0.4851 0.8400 0.0004 23 1 3.8751 -0.6804 0.8889 24 1 3.8745 -0.6799 -0.8911 25 1 6.2071 -2.1087 0.8891 26 1 6.2072 -2.1087 -0.8908 27 1 6.8188 -4.4415 2.1576 28 1 7.4047 -7.8077 -1.4975 29 1 8.8417 -6.8663 -1.9929 30 1 8.9341 -8.8027 -0.0133 31 1 10.0058 -7.3623 -0.0028 32 1 8.9003 -6.9213 2.0392 33 1 7.4510 -7.8611 1.5637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334886865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:18 Heat of formation + Delta-G solvation = -14.433245 kcal Electronic energy + Delta-G solvation = -18251.808268 eV Core-core repulsion = 15212.828008 eV Total energy + Delta-G solvation = -3038.980260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.78788 -37.83862 -37.56789 -36.85762 -35.29003 -32.80400 -31.79888 -31.51318 -29.19804 -27.33230 -25.04540 -22.66469 -21.50657 -20.82797 -19.69789 -19.27468 -17.75399 -17.50805 -17.02401 -16.92634 -16.76820 -15.96469 -15.27184 -15.22367 -14.65930 -14.56134 -14.23174 -14.06668 -13.89020 -13.63508 -13.48933 -13.06142 -12.96788 -12.91148 -12.57569 -12.46126 -12.41091 -12.15841 -11.80713 -11.72858 -11.70527 -11.15071 -10.89490 -10.09594 -9.60488 -8.40523 -6.57391 -0.91980 0.76515 1.25602 1.37903 1.42122 1.53160 1.59867 2.13051 2.32486 2.84444 2.90164 3.07607 3.25424 3.40383 3.58657 3.88023 3.93671 4.07830 4.29328 4.42601 4.44248 4.53440 4.58097 4.62750 4.68773 4.85407 5.00237 5.05610 5.14032 5.26955 5.49812 5.82543 5.86733 6.47808 6.60561 7.09715 8.75544 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.050302 B = 0.004297 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.499599 B = 6515.093933 C = 6576.348107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.218 1.218 7 C -0.555 4.555 8 H 0.031 0.969 9 C -0.467 4.467 10 S 2.415 3.585 11 O -0.992 6.992 12 O -0.981 6.981 13 C -0.515 4.515 14 C 0.056 3.944 15 C -0.274 4.274 16 C 0.060 3.940 17 N -0.396 5.396 18 N -0.304 5.304 19 C 0.108 3.892 20 C -0.112 4.112 21 C -0.066 4.066 22 H 0.276 0.724 23 H 0.124 0.876 24 H 0.115 0.885 25 H 0.193 0.807 26 H 0.170 0.830 27 H 0.167 0.833 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.580 -10.918 2.811 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.140 1.140 7 C -0.594 4.594 8 H 0.049 0.951 9 C -0.600 4.600 10 S 2.603 3.397 11 O -0.989 6.989 12 O -0.978 6.978 13 C -0.645 4.645 14 C -0.109 4.109 15 C -0.304 4.304 16 C -0.070 4.070 17 N -0.180 5.180 18 N -0.128 5.128 19 C -0.011 4.011 20 C -0.150 4.150 21 C -0.104 4.104 22 H 0.085 0.915 23 H 0.141 0.859 24 H 0.133 0.867 25 H 0.210 0.790 26 H 0.188 0.812 27 H 0.184 0.816 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.156 0.844 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 23.989 -11.746 1.281 26.741 hybrid contribution -0.437 1.449 0.491 1.592 sum 23.552 -10.297 1.772 25.765 Atomic orbital electron populations 1.70039 1.08828 1.29300 1.49534 1.26157 0.95787 1.04173 0.92153 0.85600 0.80506 0.76216 0.80223 1.18215 1.20425 1.14021 1.20387 0.88657 0.94624 1.55686 0.95118 1.28044 1.04506 1.18608 1.08800 1.08018 0.78146 0.79852 0.73691 1.93438 1.82063 1.76042 1.47346 1.93431 1.81913 1.75795 1.46619 1.28773 1.20806 0.99008 1.15927 1.21310 1.01612 0.95972 0.92013 1.20989 1.12365 0.96654 1.00362 1.23099 0.99043 0.98163 0.86667 1.50586 1.45032 1.15100 1.07288 1.77274 1.18157 0.94401 1.22920 1.22938 0.97659 0.80187 1.00312 1.22929 0.99228 1.03537 0.89325 1.21221 1.00056 0.89295 0.99833 0.91519 0.85857 0.86715 0.78995 0.81189 0.81565 0.88522 0.87913 0.84442 0.87985 0.86127 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.12 13.96 21.44 0.30 -58.82 16 2 C 0.02 1.02 5.47 84.65 0.46 1.49 16 3 Si 0.96 40.72 27.47 68.60 1.88 42.61 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.22 -7.73 6.54 99.48 0.65 -7.08 16 7 C -0.56 -32.85 9.68 25.60 0.25 -32.60 16 8 H 0.03 2.08 7.96 -2.91 -0.02 2.06 16 9 C -0.47 -20.38 4.63 71.24 0.33 -20.05 16 10 S 2.42 104.10 4.62 -56.49 -0.26 103.84 16 11 O -0.99 -51.63 18.10 -127.37 -2.31 -53.94 16 12 O -0.98 -48.20 18.10 -127.37 -2.30 -50.50 16 13 C -0.51 -15.21 6.37 71.24 0.45 -14.76 16 14 C 0.06 1.91 6.47 43.10 0.28 2.19 16 15 C -0.27 -8.18 10.74 22.02 0.24 -7.95 16 16 C 0.06 1.48 7.49 41.72 0.31 1.79 16 17 N -0.40 -11.01 4.85 -330.19 -1.60 -12.61 16 18 N -0.30 -11.06 12.70 -47.49 -0.60 -11.67 16 19 C 0.11 1.63 7.77 86.72 0.67 2.30 16 20 C -0.11 -0.70 7.19 31.67 0.23 -0.47 16 21 C -0.07 -0.75 6.86 30.68 0.21 -0.54 16 22 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 23 H 0.12 4.47 7.20 -2.39 -0.02 4.45 16 24 H 0.11 4.26 7.57 -2.39 -0.02 4.25 16 25 H 0.19 3.84 8.14 -2.39 -0.02 3.82 16 26 H 0.17 4.08 8.14 -2.39 -0.02 4.06 16 27 H 0.17 4.24 8.06 -2.91 -0.02 4.21 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -94.43 297.45 -0.40 -94.83 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.06 Total: 14.87 kcal Atomic # 6 Polarization: -72.03 SS G_CDS: 3.43 Total: -68.60 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.90 Total: -83.10 kcal Atomic # 8 Polarization: -99.83 SS G_CDS: -4.61 Total: -104.44 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.61 kcal Atomic # 16 Polarization: 104.10 SS G_CDS: -0.26 Total: 103.84 kcal Total: -94.43 -0.40 -94.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334886865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.393 kcal (2) G-P(sol) polarization free energy of solvation -94.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds