Wall clock time and date at job start Mon Mar 30 2020 01:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99913 * 2 1 4 4 H 1.08993 * 109.46749 * 55.00569 * 3 2 1 5 5 C 1.52998 * 109.47412 * 294.99955 * 3 2 1 6 6 C 1.50700 * 109.46649 * 174.99859 * 3 2 1 7 7 O 1.20826 * 120.00025 * 25.00796 * 6 3 2 8 8 O 1.34237 * 119.99909 * 204.99840 * 6 3 2 9 9 C 1.45201 * 116.99839 * 180.02562 * 8 6 3 10 10 H 1.08996 * 109.47119 * 329.99615 * 9 8 6 11 11 C 1.50702 * 109.46621 * 210.00093 * 9 8 6 12 12 H 1.07996 * 120.00321 * 274.96857 * 11 9 8 13 13 C 1.37879 * 119.99946 * 94.97156 * 11 9 8 14 14 N 1.31515 * 120.00065 * 184.89069 * 13 11 9 15 15 Si 1.86803 * 119.99877 * 4.89807 * 13 11 9 16 16 H 1.48499 * 109.47150 * 84.80699 * 15 13 11 17 17 H 1.48499 * 109.47022 * 204.80747 * 15 13 11 18 18 H 1.48502 * 109.46866 * 324.80342 * 15 13 11 19 19 C 1.50691 * 109.47122 * 90.00226 * 9 8 6 20 20 C 1.34514 * 125.79235 * 214.78803 * 19 9 8 21 21 C 1.41377 * 106.84355 * 179.89435 * 20 19 9 22 22 C 1.34519 * 106.84105 * 0.36856 * 21 20 19 23 23 O 1.34298 * 108.41864 * 359.77436 * 22 21 20 24 24 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47091 * 299.99629 * 1 2 3 26 26 H 1.09003 * 109.47256 * 59.99825 * 1 2 3 27 27 H 1.08995 * 109.47293 * 179.97438 * 5 3 2 28 28 H 1.08995 * 109.47063 * 300.00503 * 5 3 2 29 29 H 1.09001 * 109.46489 * 60.00010 * 5 3 2 30 30 H 0.97003 * 119.99842 * 179.97438 * 14 13 11 31 31 H 1.08001 * 126.57359 * 0.02562 * 20 19 9 32 32 H 1.07998 * 126.58212 * 180.17015 * 21 20 19 33 33 H 1.07995 * 125.78655 * 179.74988 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2540 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7142 1.9385 0.1239 7 8 4.4556 1.0564 -0.2396 8 8 4.2196 3.0709 0.6378 9 6 5.6658 3.1666 0.7265 10 1 6.0880 2.1712 0.8642 11 6 6.0406 4.0376 1.8978 12 1 6.0808 5.1106 1.7818 13 6 6.3324 3.4647 3.1175 14 7 6.5652 4.2273 4.1633 15 14 6.3971 1.6052 3.2844 16 1 7.7437 1.1194 2.8897 17 1 6.1272 1.2251 4.6943 18 1 5.3716 0.9931 2.4018 19 6 6.2080 3.7711 -0.5429 20 6 7.3764 3.4537 -1.1289 21 6 7.4838 4.2547 -2.2889 22 6 6.3784 5.0196 -2.3381 23 8 5.6092 4.7223 -1.2781 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.9876 3.4638 -1.3071 28 1 2.2354 1.9150 -2.1491 29 1 0.6636 2.2779 -1.3968 30 1 6.7701 3.8241 5.0215 31 1 8.0938 2.7251 -0.7811 32 1 8.2987 4.2550 -2.9977 33 1 6.1486 5.7491 -3.1005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345546811.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:54 Heat of formation + Delta-G solvation = -71.485892 kcal Electronic energy + Delta-G solvation = -18830.996419 eV Core-core repulsion = 15757.249420 eV Total energy + Delta-G solvation = -3073.746999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.85032 -39.60486 -35.84085 -33.44746 -32.96618 -32.30352 -30.49440 -28.86981 -27.16380 -24.91327 -22.85085 -21.17058 -20.58840 -19.49635 -17.67097 -17.24394 -16.77825 -16.40053 -15.47968 -15.29610 -15.05480 -14.39520 -14.32495 -13.90089 -13.55770 -13.07143 -12.93165 -12.56195 -12.29757 -12.15909 -12.11437 -12.00103 -11.71585 -11.55320 -11.33800 -11.05009 -10.19019 -9.88544 -9.82179 -9.79261 -9.67714 -9.26653 -8.99786 -7.75568 -7.64321 -6.55829 -4.65034 1.45676 2.42208 2.51341 2.87978 3.06331 3.18958 3.24706 3.29423 3.50965 3.75683 4.08215 4.80152 4.89899 5.03666 5.06589 5.09005 5.28831 5.44404 5.57664 5.62604 5.65336 5.71929 5.92610 6.05674 6.14346 6.42568 6.54368 6.72450 7.01893 7.12130 7.36611 7.85667 8.00161 8.54576 8.56058 9.00735 10.52290 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.008400 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.642951 B = 3332.485655 C = 4662.706829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.200 6.200 3 C -0.071 4.071 4 H 0.117 0.883 5 C -0.139 4.139 6 C 0.469 3.531 7 O -0.506 6.506 8 O -0.347 6.347 9 C 0.253 3.747 10 H 0.081 0.919 11 C -0.505 4.505 12 H 0.090 0.910 13 C 0.093 3.907 14 N -0.852 5.852 15 Si 0.866 3.134 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.254 1.254 19 C 0.031 3.969 20 C -0.228 4.228 21 C -0.209 4.209 22 C -0.072 4.072 23 O -0.169 6.169 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.277 0.723 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 -3.653 -9.218 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.025 5.975 3 C -0.200 4.200 4 H 0.135 0.865 5 C -0.198 4.198 6 C 0.309 3.691 7 O -0.395 6.395 8 O -0.264 6.264 9 C 0.201 3.799 10 H 0.099 0.901 11 C -0.540 4.540 12 H 0.108 0.892 13 C -0.117 4.117 14 N -0.486 5.486 15 Si 0.691 3.309 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.178 1.178 19 C -0.020 4.020 20 C -0.247 4.247 21 C -0.228 4.228 22 C -0.140 4.140 23 O -0.064 6.064 24 H 0.121 0.879 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.942 -4.606 -9.029 12.877 hybrid contribution -0.421 0.163 0.122 0.468 sum -8.364 -4.443 -8.907 13.001 Atomic orbital electron populations 1.23520 0.95602 1.06429 1.04963 1.87359 1.04975 1.07208 1.97924 1.23070 0.95654 0.97139 1.04174 0.86520 1.21953 1.01372 1.02001 0.94487 1.22555 0.89686 0.82175 0.74644 1.90607 1.60750 1.42447 1.45671 1.87145 1.30329 1.37185 1.71743 1.19610 0.75342 0.97010 0.87917 0.90117 1.20798 1.45233 0.95587 0.92385 0.89162 1.25136 0.92495 0.99103 0.94981 1.69868 1.41727 1.36453 1.00571 0.86948 0.80555 0.84670 0.78763 1.18786 1.19996 1.17846 1.23309 0.94186 0.90601 0.93948 1.21368 0.99448 1.06043 0.97835 1.21669 1.00142 1.00665 1.00354 1.23825 0.93158 1.04330 0.92655 1.84066 1.44658 1.46599 1.31116 0.87940 0.90438 0.90398 0.90306 0.90841 0.91323 0.91283 0.84000 0.84172 0.78980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 10.45 101.05 1.06 -0.29 16 2 S -0.20 -3.12 21.10 -107.50 -2.27 -5.39 16 3 C -0.07 -1.16 3.29 -27.88 -0.09 -1.25 16 4 H 0.12 1.75 8.14 -51.93 -0.42 1.32 16 5 C -0.14 -1.85 9.08 37.16 0.34 -1.51 16 6 C 0.47 10.20 7.05 36.01 0.25 10.46 16 7 O -0.51 -12.19 15.36 -18.75 -0.29 -12.47 16 8 O -0.35 -8.37 9.84 -42.06 -0.41 -8.78 16 9 C 0.25 6.40 2.06 -29.04 -0.06 6.34 16 10 H 0.08 2.10 4.31 -51.93 -0.22 1.87 16 11 C -0.50 -14.06 9.23 -34.44 -0.32 -14.38 16 12 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 13 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 14 N -0.85 -24.23 13.96 55.43 0.77 -23.46 16 15 Si 0.87 20.91 26.99 -169.99 -4.59 16.33 16 16 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.25 -6.34 6.82 56.52 0.39 -5.95 16 19 C 0.03 0.72 6.18 -35.63 -0.22 0.50 16 20 C -0.23 -4.82 10.81 -39.70 -0.43 -5.25 16 21 C -0.21 -3.72 10.91 -39.70 -0.43 -4.15 16 22 C -0.07 -1.26 12.09 29.42 0.36 -0.90 16 23 O -0.17 -3.67 10.63 2.09 0.02 -3.65 16 24 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 26 H 0.08 0.66 7.14 -51.92 -0.37 0.28 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.69 6.92 -51.93 -0.36 0.33 16 30 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.14 2.82 8.06 -52.49 -0.42 2.39 16 32 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -31.90 305.13 -5.72 -37.62 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.91 Total: 3.18 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 0.35 Total: -7.98 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.77 Total: -23.46 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.68 Total: -24.91 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.59 Total: 16.33 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.27 Total: -5.39 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.90 -5.72 -37.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546811.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.863 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds