Wall clock time and date at job start Mon Mar 30 2020 01:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99913 * 2 1 4 4 H 1.08993 * 109.46749 * 55.00569 * 3 2 1 5 5 C 1.52998 * 109.47412 * 294.99955 * 3 2 1 6 6 C 1.50700 * 109.46649 * 174.99859 * 3 2 1 7 7 O 1.20826 * 120.00025 * 25.00796 * 6 3 2 8 8 O 1.34237 * 119.99909 * 204.99840 * 6 3 2 9 9 C 1.45201 * 116.99839 * 180.02562 * 8 6 3 10 10 H 1.08996 * 109.47119 * 329.99615 * 9 8 6 11 11 C 1.50702 * 109.46621 * 210.00093 * 9 8 6 12 12 H 1.07996 * 120.00321 * 274.96857 * 11 9 8 13 13 C 1.37879 * 119.99946 * 94.97156 * 11 9 8 14 14 N 1.31515 * 120.00065 * 184.89069 * 13 11 9 15 15 Si 1.86803 * 119.99877 * 4.89807 * 13 11 9 16 16 H 1.48499 * 109.47150 * 84.80699 * 15 13 11 17 17 H 1.48499 * 109.47022 * 204.80747 * 15 13 11 18 18 H 1.48502 * 109.46866 * 324.80342 * 15 13 11 19 19 C 1.50691 * 109.47122 * 90.00226 * 9 8 6 20 20 C 1.34514 * 125.79235 * 214.78803 * 19 9 8 21 21 C 1.41377 * 106.84355 * 179.89435 * 20 19 9 22 22 C 1.34519 * 106.84105 * 0.36856 * 21 20 19 23 23 O 1.34298 * 108.41864 * 359.77436 * 22 21 20 24 24 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47091 * 299.99629 * 1 2 3 26 26 H 1.09003 * 109.47256 * 59.99825 * 1 2 3 27 27 H 1.08995 * 109.47293 * 179.97438 * 5 3 2 28 28 H 1.08995 * 109.47063 * 300.00503 * 5 3 2 29 29 H 1.09001 * 109.46489 * 60.00010 * 5 3 2 30 30 H 0.97003 * 119.99842 * 179.97438 * 14 13 11 31 31 H 1.08001 * 126.57359 * 0.02562 * 20 19 9 32 32 H 1.07998 * 126.58212 * 180.17015 * 21 20 19 33 33 H 1.07995 * 125.78655 * 179.74988 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2540 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7142 1.9385 0.1239 7 8 4.4556 1.0564 -0.2396 8 8 4.2196 3.0709 0.6378 9 6 5.6658 3.1666 0.7265 10 1 6.0880 2.1712 0.8642 11 6 6.0406 4.0376 1.8978 12 1 6.0808 5.1106 1.7818 13 6 6.3324 3.4647 3.1175 14 7 6.5652 4.2273 4.1633 15 14 6.3971 1.6052 3.2844 16 1 7.7437 1.1194 2.8897 17 1 6.1272 1.2251 4.6943 18 1 5.3716 0.9931 2.4018 19 6 6.2080 3.7711 -0.5429 20 6 7.3764 3.4537 -1.1289 21 6 7.4838 4.2547 -2.2889 22 6 6.3784 5.0196 -2.3381 23 8 5.6092 4.7223 -1.2781 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.9876 3.4638 -1.3071 28 1 2.2354 1.9150 -2.1491 29 1 0.6636 2.2779 -1.3968 30 1 6.7701 3.8241 5.0215 31 1 8.0938 2.7251 -0.7811 32 1 8.2987 4.2550 -2.9977 33 1 6.1486 5.7491 -3.1005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546811.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:54 Heat of formation + Delta-G solvation = -91.283997 kcal Electronic energy + Delta-G solvation = -18831.854929 eV Core-core repulsion = 15757.249420 eV Total energy + Delta-G solvation = -3074.605509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.43475 -41.37926 -37.68707 -35.30073 -34.47840 -33.90385 -32.24774 -29.67699 -28.94029 -26.32231 -24.65811 -22.71842 -22.20088 -21.15326 -19.65953 -18.91623 -18.48175 -17.89169 -17.15416 -16.85527 -16.67440 -16.19281 -15.48125 -15.36647 -14.88234 -14.45624 -14.24755 -13.97340 -13.84739 -13.70029 -13.57003 -13.36038 -13.16694 -13.02942 -12.97493 -12.76406 -12.07693 -11.91680 -11.66784 -11.48648 -11.09479 -10.92039 -10.79659 -9.35215 -8.82660 -8.66705 -6.81682 0.24690 0.84627 1.16133 1.17755 1.21589 1.32796 1.52921 1.70176 1.88187 2.06809 2.21790 2.83209 3.60998 3.69504 3.89584 4.03803 4.11638 4.20902 4.32036 4.36000 4.38974 4.56105 4.62434 4.89335 4.90520 4.96814 5.03183 5.04309 5.19333 5.54187 5.67700 5.93903 6.27168 6.32615 6.77005 6.88087 8.46637 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.008400 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.642951 B = 3332.485655 C = 4662.706829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.265 6.265 3 C -0.061 4.061 4 H 0.131 0.869 5 C -0.132 4.132 6 C 0.460 3.540 7 O -0.533 6.533 8 O -0.360 6.360 9 C 0.261 3.739 10 H 0.069 0.931 11 C -0.522 4.522 12 H 0.052 0.948 13 C 0.054 3.946 14 N -0.892 5.892 15 Si 0.923 3.077 16 H -0.250 1.250 17 H -0.257 1.257 18 H -0.271 1.271 19 C -0.018 4.018 20 C -0.231 4.231 21 C -0.214 4.214 22 C -0.056 4.056 23 O -0.189 6.189 24 H 0.121 0.879 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.284 0.716 31 H 0.146 0.854 32 H 0.181 0.819 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.145 -4.266 -11.091 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.040 6.040 3 C -0.190 4.190 4 H 0.149 0.851 5 C -0.191 4.191 6 C 0.303 3.697 7 O -0.424 6.424 8 O -0.277 6.277 9 C 0.209 3.791 10 H 0.087 0.913 11 C -0.558 4.558 12 H 0.070 0.930 13 C -0.152 4.152 14 N -0.528 5.528 15 Si 0.745 3.255 16 H -0.174 1.174 17 H -0.181 1.181 18 H -0.196 1.196 19 C -0.069 4.069 20 C -0.251 4.251 21 C -0.233 4.233 22 C -0.122 4.122 23 O -0.086 6.086 24 H 0.139 0.861 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.164 0.836 32 H 0.198 0.802 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.433 -5.213 -10.896 15.326 hybrid contribution -0.046 0.383 0.534 0.659 sum -9.479 -4.830 -10.362 14.851 Atomic orbital electron populations 1.23633 0.89700 1.08209 1.06745 1.87565 1.11399 1.06863 1.98170 1.23063 0.91224 0.98209 1.06509 0.85127 1.21980 1.03726 1.01204 0.92147 1.23533 0.92131 0.80666 0.73399 1.90578 1.62105 1.42955 1.46716 1.87006 1.29436 1.38628 1.72610 1.19205 0.75561 0.95932 0.88448 0.91315 1.20777 1.46820 0.94174 0.94012 0.93004 1.25763 0.92025 1.02919 0.94489 1.69936 1.43390 1.38176 1.01266 0.86091 0.80556 0.79729 0.79142 1.17417 1.18080 1.19594 1.23017 0.95732 0.93122 0.95003 1.21753 0.98456 1.06052 0.98813 1.22094 1.01603 0.99792 0.99794 1.24956 0.91987 1.03760 0.91503 1.84023 1.45806 1.46414 1.32351 0.86060 0.89063 0.88159 0.90601 0.91676 0.87240 0.90577 0.83618 0.80199 0.73718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.45 113.37 1.19 -0.64 16 2 S -0.26 -7.88 21.10 -56.49 -1.19 -9.08 16 3 C -0.06 -1.94 3.29 29.85 0.10 -1.84 16 4 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 5 C -0.13 -3.21 9.08 71.98 0.65 -2.56 16 6 C 0.46 20.33 7.05 71.24 0.50 20.83 16 7 O -0.53 -26.30 15.36 21.96 0.34 -25.96 16 8 O -0.36 -17.92 9.84 -48.82 -0.48 -18.40 16 9 C 0.26 13.74 2.06 29.10 0.06 13.80 16 10 H 0.07 3.72 4.31 -2.39 -0.01 3.71 16 11 C -0.52 -30.64 9.23 25.60 0.24 -30.40 16 12 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 13 C 0.05 3.10 5.47 84.66 0.46 3.57 16 14 N -0.89 -52.48 13.96 21.45 0.30 -52.18 16 15 Si 0.92 44.40 26.99 68.60 1.85 46.25 16 16 H -0.25 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.27 -13.67 6.82 99.48 0.68 -13.00 16 19 C -0.02 -0.87 6.18 24.83 0.15 -0.72 16 20 C -0.23 -9.79 10.81 22.19 0.24 -9.55 16 21 C -0.21 -7.10 10.91 22.19 0.24 -6.85 16 22 C -0.06 -1.79 12.09 66.97 0.81 -0.98 16 23 O -0.19 -8.23 10.63 0.97 0.01 -8.22 16 24 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 1.20 7.14 -2.39 -0.02 1.18 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.11 1.76 6.92 -2.39 -0.02 1.75 16 30 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.15 5.85 8.06 -2.91 -0.02 5.82 16 32 H 0.18 4.40 8.06 -2.91 -0.02 4.37 16 33 H 0.25 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -74.39 305.13 6.56 -67.83 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.09 Total: 15.10 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.64 Total: -15.35 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.30 Total: -52.18 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.13 Total: -52.58 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.85 Total: 46.25 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.19 Total: -9.08 kcal Total: -74.39 6.56 -67.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546811.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.450 kcal (2) G-P(sol) polarization free energy of solvation -74.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds