Wall clock time and date at job start Mon Mar 30 2020 01:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 102.99933 * 2 1 4 4 H 1.08996 * 109.46996 * 304.99354 * 3 2 1 5 5 C 1.52989 * 109.47238 * 65.00029 * 3 2 1 6 6 C 1.50703 * 109.47033 * 185.00088 * 3 2 1 7 7 O 1.20833 * 119.99858 * 339.99645 * 6 3 2 8 8 O 1.34233 * 120.00222 * 159.99911 * 6 3 2 9 9 C 1.45201 * 116.99952 * 179.97438 * 8 6 3 10 10 H 1.08995 * 109.46999 * 330.00385 * 9 8 6 11 11 C 1.50699 * 109.46751 * 209.99893 * 9 8 6 12 12 H 1.07999 * 120.00267 * 274.97475 * 11 9 8 13 13 C 1.37877 * 119.99884 * 94.98059 * 11 9 8 14 14 N 1.31516 * 120.00205 * 184.89611 * 13 11 9 15 15 Si 1.86801 * 119.99958 * 4.89200 * 13 11 9 16 16 H 1.48507 * 109.47050 * 84.81352 * 15 13 11 17 17 H 1.48495 * 109.47067 * 204.81096 * 15 13 11 18 18 H 1.48492 * 109.47200 * 324.81638 * 15 13 11 19 19 C 1.50709 * 109.46861 * 90.00184 * 9 8 6 20 20 C 1.34503 * 125.78604 * 214.78798 * 19 9 8 21 21 C 1.41388 * 106.83921 * 179.89063 * 20 19 9 22 22 C 1.34512 * 106.83956 * 0.37225 * 21 20 19 23 23 O 1.34299 * 125.78648 * 35.09643 * 19 9 8 24 24 H 1.09008 * 109.46679 * 60.00032 * 1 2 3 25 25 H 1.08996 * 109.47351 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47159 * 300.00354 * 1 2 3 27 27 H 1.09002 * 109.47351 * 60.00054 * 5 3 2 28 28 H 1.09004 * 109.47440 * 179.97438 * 5 3 2 29 29 H 1.08998 * 109.47224 * 299.99863 * 5 3 2 30 30 H 0.96994 * 119.99904 * 179.97438 * 14 13 11 31 31 H 1.08001 * 126.58594 * 0.02821 * 20 19 9 32 32 H 1.08000 * 126.57950 * 180.16493 * 21 20 19 33 33 H 1.07998 * 125.78895 * 179.74832 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7428 2.4016 1.3072 6 6 3.7142 1.9386 -0.1239 7 8 4.4524 1.0233 0.1545 8 8 4.2233 3.1076 -0.5434 9 6 5.6692 3.2009 -0.6382 10 1 6.1249 2.5486 0.1067 11 6 6.0980 4.6240 -0.3896 12 1 6.1028 5.3363 -1.2014 13 6 6.4844 5.0168 0.8743 14 7 6.7661 6.2790 1.1133 15 14 6.6077 3.7562 2.2473 16 1 7.9374 3.0969 2.1961 17 1 6.4415 4.4340 3.5580 18 1 5.5424 2.7354 2.0792 19 6 6.1107 2.7764 -2.0152 20 6 7.2456 2.1170 -2.3088 21 6 7.2556 1.9223 -3.7092 22 6 6.1301 2.4817 -4.1884 23 8 5.4405 2.9975 -3.1577 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.2354 1.9150 2.1491 28 1 1.9884 3.4636 1.3075 29 1 0.6636 2.2779 1.3968 30 1 7.0376 6.5554 2.0026 31 1 8.0029 1.7957 -1.6090 32 1 8.0217 1.4234 -4.2841 33 1 5.8318 2.5113 -5.2259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:57 Heat of formation + Delta-G solvation = -90.998559 kcal Electronic energy + Delta-G solvation = -18821.218075 eV Core-core repulsion = 15746.624943 eV Total energy + Delta-G solvation = -3074.593132 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.44134 -41.37881 -37.68063 -35.29911 -34.49190 -33.91124 -32.24174 -29.66578 -28.95002 -26.29189 -24.69530 -22.74121 -22.17145 -21.17846 -19.63766 -18.94049 -18.35236 -17.97937 -17.22659 -16.80619 -16.61268 -16.33811 -15.37513 -15.27968 -14.85644 -14.57475 -14.25431 -14.11354 -13.70949 -13.70558 -13.50157 -13.33579 -13.25641 -13.02707 -12.98025 -12.75970 -12.05870 -11.91408 -11.66103 -11.48902 -11.08775 -10.90543 -10.80263 -9.35824 -8.80802 -8.65724 -6.81044 0.26762 0.84608 1.13083 1.18715 1.22073 1.32584 1.53789 1.70120 1.88917 2.07340 2.21239 2.83764 3.60302 3.70249 3.88265 4.02993 4.11170 4.20409 4.31462 4.36476 4.39706 4.55467 4.60704 4.89767 4.90153 4.96817 5.02675 5.04458 5.18979 5.54196 5.67341 5.94584 6.26699 6.32978 6.76923 6.88621 8.47705 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.008376 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.158865 B = 3342.083380 C = 4672.581324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.257 6.257 3 C -0.060 4.060 4 H 0.135 0.865 5 C -0.140 4.140 6 C 0.459 3.541 7 O -0.533 6.533 8 O -0.360 6.360 9 C 0.261 3.739 10 H 0.071 0.929 11 C -0.522 4.522 12 H 0.050 0.950 13 C 0.054 3.946 14 N -0.893 5.893 15 Si 0.924 3.076 16 H -0.252 1.252 17 H -0.256 1.256 18 H -0.268 1.268 19 C -0.020 4.020 20 C -0.231 4.231 21 C -0.214 4.214 22 C -0.057 4.057 23 O -0.191 6.191 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.284 0.716 31 H 0.147 0.853 32 H 0.181 0.819 33 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 -9.961 -3.329 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.032 6.032 3 C -0.189 4.189 4 H 0.153 0.847 5 C -0.198 4.198 6 C 0.302 3.698 7 O -0.423 6.423 8 O -0.276 6.276 9 C 0.209 3.791 10 H 0.088 0.912 11 C -0.558 4.558 12 H 0.069 0.931 13 C -0.152 4.152 14 N -0.528 5.528 15 Si 0.746 3.254 16 H -0.176 1.176 17 H -0.180 1.180 18 H -0.193 1.193 19 C -0.070 4.070 20 C -0.251 4.251 21 C -0.233 4.233 22 C -0.123 4.123 23 O -0.088 6.088 24 H 0.111 0.889 25 H 0.140 0.860 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.165 0.835 32 H 0.199 0.801 33 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -9.952 -10.762 -3.152 14.994 hybrid contribution -0.003 0.835 0.548 0.999 sum -9.955 -9.927 -2.604 14.298 Atomic orbital electron populations 1.23642 0.90004 1.08188 1.06697 1.87534 1.11020 1.06449 1.98159 1.23048 0.91195 0.98445 1.06228 0.84686 1.22036 1.03868 1.01343 0.92568 1.23545 0.92125 0.81153 0.72941 1.90581 1.62259 1.42190 1.47308 1.87003 1.29409 1.35193 1.76037 1.19211 0.75993 0.96931 0.86969 0.91196 1.20761 1.44555 0.93748 0.96724 0.93149 1.25774 0.92205 0.97087 1.00147 1.69937 1.41928 1.16755 1.24180 0.86077 0.80539 0.79431 0.79387 1.17645 1.17957 1.19275 1.23072 0.94937 1.01576 0.87433 1.21756 0.99247 1.05929 0.98122 1.22103 1.01138 1.06701 0.93326 1.24955 0.93632 1.00339 0.93389 1.84025 1.46351 1.63117 1.15291 0.88905 0.86035 0.88457 0.91978 0.90758 0.87032 0.90570 0.83498 0.80138 0.73775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 10.45 113.37 1.19 -0.63 16 2 S -0.26 -7.44 21.04 -56.49 -1.19 -8.63 16 3 C -0.06 -1.90 3.29 29.85 0.10 -1.81 16 4 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 5 C -0.14 -3.67 9.08 71.98 0.65 -3.01 16 6 C 0.46 20.27 7.10 71.24 0.51 20.78 16 7 O -0.53 -26.24 15.26 21.94 0.33 -25.91 16 8 O -0.36 -17.86 9.84 -48.79 -0.48 -18.34 16 9 C 0.26 13.75 2.06 29.10 0.06 13.81 16 10 H 0.07 3.76 4.31 -2.39 -0.01 3.75 16 11 C -0.52 -30.50 9.23 25.60 0.24 -30.27 16 12 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 13 C 0.05 3.06 5.47 84.65 0.46 3.52 16 14 N -0.89 -52.04 13.96 21.45 0.30 -51.74 16 15 Si 0.92 43.51 26.99 68.60 1.85 45.36 16 16 H -0.25 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.27 -13.04 6.82 99.48 0.68 -12.36 16 19 C -0.02 -0.95 6.18 24.83 0.15 -0.80 16 20 C -0.23 -9.91 10.81 22.19 0.24 -9.67 16 21 C -0.21 -7.25 10.91 22.19 0.24 -7.01 16 22 C -0.06 -1.89 12.09 66.97 0.81 -1.08 16 23 O -0.19 -8.52 10.63 0.97 0.01 -8.51 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.10 1.18 7.14 -2.39 -0.02 1.17 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.11 1.95 6.92 -2.39 -0.02 1.93 16 30 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.15 5.93 8.06 -2.91 -0.02 5.91 16 32 H 0.18 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.25 5.15 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -73.82 305.03 6.56 -67.26 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.09 Total: 16.66 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 4.65 Total: -16.16 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.30 Total: -51.74 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -0.13 Total: -52.76 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.85 Total: 45.36 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.19 Total: -8.63 kcal Total: -73.82 6.56 -67.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.737 kcal (2) G-P(sol) polarization free energy of solvation -73.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds