Wall clock time and date at job start Mon Mar 30 2020 01:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81403 * 102.99879 * 2 1 4 4 H 1.09002 * 109.47034 * 305.00041 * 3 2 1 5 5 C 1.53000 * 109.47488 * 64.99777 * 3 2 1 6 6 C 1.50697 * 109.46958 * 185.00247 * 3 2 1 7 7 O 1.20826 * 120.00425 * 339.99193 * 6 3 2 8 8 O 1.34234 * 120.00257 * 160.00373 * 6 3 2 9 9 C 1.45193 * 117.00207 * 179.97438 * 8 6 3 10 10 H 1.09002 * 109.47134 * 29.99494 * 9 8 6 11 11 C 1.50706 * 109.47288 * 149.99703 * 9 8 6 12 12 H 1.07989 * 120.00008 * 114.85611 * 11 9 8 13 13 C 1.37876 * 119.99620 * 295.13553 * 11 9 8 14 14 N 1.31518 * 119.99702 * 183.64265 * 13 11 9 15 15 Si 1.86798 * 120.00187 * 3.63617 * 13 11 9 16 16 H 1.48506 * 109.47202 * 85.31800 * 15 13 11 17 17 H 1.48509 * 109.47110 * 205.31531 * 15 13 11 18 18 H 1.48502 * 109.47322 * 325.31722 * 15 13 11 19 19 C 1.50697 * 109.47224 * 269.99816 * 9 8 6 20 20 C 1.34510 * 125.79263 * 143.63565 * 19 9 8 21 21 C 1.41389 * 106.84312 * 179.97438 * 20 19 9 22 22 C 1.34514 * 106.83662 * 0.02562 * 21 20 19 23 23 O 1.34306 * 125.78528 * 323.32303 * 19 9 8 24 24 H 1.09002 * 109.46995 * 59.99948 * 1 2 3 25 25 H 1.08992 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47045 * 299.99977 * 1 2 3 27 27 H 1.08999 * 109.46937 * 300.00755 * 5 3 2 28 28 H 1.09008 * 109.46895 * 59.99701 * 5 3 2 29 29 H 1.08992 * 109.47306 * 180.02562 * 5 3 2 30 30 H 0.97005 * 119.99894 * 179.97438 * 14 13 11 31 31 H 1.07997 * 126.58302 * 0.03448 * 20 19 9 32 32 H 1.07998 * 126.57795 * 179.97438 * 21 20 19 33 33 H 1.08002 * 125.78745 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4017 1.3073 6 6 3.7142 1.9386 -0.1239 7 8 4.4524 1.0235 0.1545 8 8 4.2233 3.1077 -0.5433 9 6 5.6691 3.2010 -0.6382 10 1 6.0825 2.2184 -0.8654 11 6 6.0394 4.1674 -1.7337 12 1 6.5487 5.0884 -1.4919 13 6 5.7226 3.8783 -3.0441 14 7 6.1084 4.6862 -4.0074 15 14 4.7457 2.3390 -3.4511 16 1 3.2943 2.6247 -3.3196 17 1 5.0430 1.9178 -4.8438 18 1 5.1229 1.2509 -2.5135 19 6 6.2280 3.6900 0.6731 20 6 7.3854 3.2932 1.2318 21 6 7.5174 4.0020 2.4481 22 6 6.4324 4.7891 2.5601 23 8 5.6577 4.6003 1.4793 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.6636 2.2778 1.3969 28 1 2.2354 1.9150 2.1492 29 1 1.9875 3.4638 1.3071 30 1 5.8859 4.4826 -4.9294 31 1 8.0811 2.5723 0.8283 32 1 8.3326 3.9254 3.1524 33 1 6.2224 5.4626 3.3778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345546820.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:59 Heat of formation + Delta-G solvation = -66.150255 kcal Electronic energy + Delta-G solvation = -18957.237946 eV Core-core repulsion = 15883.722317 eV Total energy + Delta-G solvation = -3073.515629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.89290 -39.71525 -35.93382 -33.45642 -32.89737 -32.34206 -30.50098 -28.88671 -27.16017 -24.91833 -22.88082 -21.20530 -20.65223 -19.53668 -17.60429 -17.29608 -16.83490 -16.43729 -15.59552 -15.24076 -15.08280 -14.37748 -14.34216 -13.94986 -13.58394 -13.07734 -12.91032 -12.55064 -12.35228 -12.17923 -12.10780 -12.02228 -11.72822 -11.64050 -11.27019 -10.94447 -10.27292 -9.99541 -9.84244 -9.76666 -9.68218 -9.29715 -8.96322 -7.79846 -7.66970 -6.48947 -4.59421 1.43277 2.38097 2.49144 2.78239 3.11897 3.19005 3.24942 3.29707 3.47406 3.72494 4.14981 4.81219 4.86658 5.02567 5.05011 5.07262 5.28973 5.40689 5.54358 5.60026 5.63834 5.70193 5.82041 6.04762 6.25034 6.38341 6.51154 6.68190 7.04244 7.07942 7.33348 7.83088 8.03668 8.45645 8.56637 9.06893 10.59010 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.008985 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.945911 B = 3115.641896 C = 4523.263313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.198 6.198 3 C -0.075 4.075 4 H 0.116 0.884 5 C -0.139 4.139 6 C 0.466 3.534 7 O -0.499 6.499 8 O -0.347 6.347 9 C 0.254 3.746 10 H 0.083 0.917 11 C -0.509 4.509 12 H 0.094 0.906 13 C 0.094 3.906 14 N -0.861 5.861 15 Si 0.871 3.129 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.255 1.255 19 C 0.027 3.973 20 C -0.223 4.223 21 C -0.211 4.211 22 C -0.069 4.069 23 O -0.166 6.166 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.275 0.725 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 -4.397 9.361 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.028 5.972 3 C -0.204 4.204 4 H 0.134 0.866 5 C -0.198 4.198 6 C 0.306 3.694 7 O -0.387 6.387 8 O -0.264 6.264 9 C 0.203 3.797 10 H 0.101 0.899 11 C -0.545 4.545 12 H 0.112 0.888 13 C -0.115 4.115 14 N -0.495 5.495 15 Si 0.697 3.303 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.179 1.179 19 C -0.024 4.024 20 C -0.242 4.242 21 C -0.231 4.231 22 C -0.136 4.136 23 O -0.062 6.062 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.971 -5.325 9.167 13.264 hybrid contribution -1.024 0.369 -0.229 1.112 sum -8.995 -4.956 8.939 13.615 Atomic orbital electron populations 1.23530 0.95592 1.06480 1.04994 1.87344 1.04980 1.06974 1.97937 1.23123 0.95608 0.97364 1.04344 0.86588 1.21954 1.01399 1.02129 0.94307 1.22566 0.89769 0.82762 0.74260 1.90618 1.60863 1.41753 1.45508 1.87103 1.30348 1.34203 1.74765 1.19957 0.74179 0.98720 0.86885 0.89928 1.20891 1.37448 1.07893 0.88255 0.88833 1.25021 0.93740 0.96888 0.95882 1.69868 1.42257 1.36688 1.00694 0.86918 0.81543 0.83322 0.78493 1.19107 1.20821 1.17948 1.23154 0.94595 0.91111 0.93507 1.21437 0.99568 1.06231 0.96977 1.21692 1.00430 1.01421 0.99516 1.23858 0.93105 1.04689 0.91995 1.84067 1.45440 1.49180 1.27486 0.90468 0.87859 0.90334 0.91291 0.90807 0.90128 0.91465 0.83818 0.84116 0.78910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 10.45 101.05 1.06 -0.32 16 2 S -0.20 -3.12 21.04 -107.50 -2.26 -5.38 16 3 C -0.07 -1.26 3.29 -27.88 -0.09 -1.35 16 4 H 0.12 1.83 8.14 -51.92 -0.42 1.41 16 5 C -0.14 -1.87 9.08 37.16 0.34 -1.53 16 6 C 0.47 10.15 6.05 36.00 0.22 10.37 16 7 O -0.50 -11.94 15.26 -18.75 -0.29 -12.23 16 8 O -0.35 -8.30 8.18 -41.83 -0.34 -8.64 16 9 C 0.25 6.38 1.73 -29.03 -0.05 6.33 16 10 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 11 C -0.51 -14.18 9.34 -34.44 -0.32 -14.51 16 12 H 0.09 2.80 7.99 -52.49 -0.42 2.38 16 13 C 0.09 2.61 5.47 -17.82 -0.10 2.52 16 14 N -0.86 -24.79 13.96 55.43 0.77 -24.01 16 15 Si 0.87 21.44 25.56 -169.99 -4.34 17.10 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.26 -6.39 6.45 56.52 0.36 -6.03 16 19 C 0.03 0.64 6.13 -35.63 -0.22 0.42 16 20 C -0.22 -4.62 10.81 -39.70 -0.43 -5.05 16 21 C -0.21 -3.69 10.91 -39.70 -0.43 -4.12 16 22 C -0.07 -1.18 12.09 29.42 0.36 -0.82 16 23 O -0.17 -3.59 10.64 2.88 0.03 -3.55 16 24 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 25 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 0.67 7.14 -51.93 -0.37 0.30 16 27 H 0.07 0.71 6.92 -51.93 -0.36 0.35 16 28 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.14 2.77 8.06 -52.49 -0.42 2.35 16 32 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.19 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -31.87 301.96 -5.57 -37.45 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.02 Total: 2.80 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 0.33 Total: -8.07 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.77 Total: -24.01 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.60 Total: -24.42 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.34 Total: 17.10 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.26 Total: -5.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.87 -5.57 -37.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546820.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.703 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds