Wall clock time and date at job start Mon Mar 30 2020 01:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81403 * 102.99879 * 2 1 4 4 H 1.09002 * 109.47034 * 305.00041 * 3 2 1 5 5 C 1.53000 * 109.47488 * 64.99777 * 3 2 1 6 6 C 1.50697 * 109.46958 * 185.00247 * 3 2 1 7 7 O 1.20826 * 120.00425 * 339.99193 * 6 3 2 8 8 O 1.34234 * 120.00257 * 160.00373 * 6 3 2 9 9 C 1.45193 * 117.00207 * 179.97438 * 8 6 3 10 10 H 1.09002 * 109.47134 * 29.99494 * 9 8 6 11 11 C 1.50706 * 109.47288 * 149.99703 * 9 8 6 12 12 H 1.07989 * 120.00008 * 114.85611 * 11 9 8 13 13 C 1.37876 * 119.99620 * 295.13553 * 11 9 8 14 14 N 1.31518 * 119.99702 * 183.64265 * 13 11 9 15 15 Si 1.86798 * 120.00187 * 3.63617 * 13 11 9 16 16 H 1.48506 * 109.47202 * 85.31800 * 15 13 11 17 17 H 1.48509 * 109.47110 * 205.31531 * 15 13 11 18 18 H 1.48502 * 109.47322 * 325.31722 * 15 13 11 19 19 C 1.50697 * 109.47224 * 269.99816 * 9 8 6 20 20 C 1.34510 * 125.79263 * 143.63565 * 19 9 8 21 21 C 1.41389 * 106.84312 * 179.97438 * 20 19 9 22 22 C 1.34514 * 106.83662 * 0.02562 * 21 20 19 23 23 O 1.34306 * 125.78528 * 323.32303 * 19 9 8 24 24 H 1.09002 * 109.46995 * 59.99948 * 1 2 3 25 25 H 1.08992 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47045 * 299.99977 * 1 2 3 27 27 H 1.08999 * 109.46937 * 300.00755 * 5 3 2 28 28 H 1.09008 * 109.46895 * 59.99701 * 5 3 2 29 29 H 1.08992 * 109.47306 * 180.02562 * 5 3 2 30 30 H 0.97005 * 119.99894 * 179.97438 * 14 13 11 31 31 H 1.07997 * 126.58302 * 0.03448 * 20 19 9 32 32 H 1.07998 * 126.57795 * 179.97438 * 21 20 19 33 33 H 1.08002 * 125.78745 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4017 1.3073 6 6 3.7142 1.9386 -0.1239 7 8 4.4524 1.0235 0.1545 8 8 4.2233 3.1077 -0.5433 9 6 5.6691 3.2010 -0.6382 10 1 6.0825 2.2184 -0.8654 11 6 6.0394 4.1674 -1.7337 12 1 6.5487 5.0884 -1.4919 13 6 5.7226 3.8783 -3.0441 14 7 6.1084 4.6862 -4.0074 15 14 4.7457 2.3390 -3.4511 16 1 3.2943 2.6247 -3.3196 17 1 5.0430 1.9178 -4.8438 18 1 5.1229 1.2509 -2.5135 19 6 6.2280 3.6900 0.6731 20 6 7.3854 3.2932 1.2318 21 6 7.5174 4.0020 2.4481 22 6 6.4324 4.7891 2.5601 23 8 5.6577 4.6003 1.4793 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.6636 2.2778 1.3969 28 1 2.2354 1.9150 2.1492 29 1 1.9875 3.4638 1.3071 30 1 5.8859 4.4826 -4.9294 31 1 8.0811 2.5723 0.8283 32 1 8.3326 3.9254 3.1524 33 1 6.2224 5.4626 3.3778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546820.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:59 Heat of formation + Delta-G solvation = -86.126248 kcal Electronic energy + Delta-G solvation = -18958.104170 eV Core-core repulsion = 15883.722317 eV Total energy + Delta-G solvation = -3074.381853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.45362 -41.48093 -37.77097 -35.23951 -34.50082 -33.92176 -32.24094 -29.69620 -28.93785 -26.32149 -24.70256 -22.73137 -22.25372 -21.17341 -19.61518 -18.94430 -18.52261 -17.92458 -17.23142 -16.83654 -16.66932 -16.21392 -15.56062 -15.38637 -14.81307 -14.48172 -14.25806 -14.00844 -13.86458 -13.70559 -13.54060 -13.39179 -13.21082 -13.03039 -12.90799 -12.75132 -12.21194 -11.94161 -11.69777 -11.50442 -11.07467 -10.94673 -10.81332 -9.36712 -8.85538 -8.62904 -6.78385 0.22007 0.82784 1.07665 1.17342 1.23478 1.29886 1.49516 1.67607 1.85256 2.08965 2.21497 2.82702 3.58648 3.65722 3.84266 3.95928 4.15005 4.24091 4.31006 4.34703 4.38302 4.55259 4.60823 4.87913 4.89278 4.97939 5.02265 5.03703 5.17848 5.51202 5.67379 5.92988 6.26437 6.31660 6.70270 6.92005 8.49886 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.008985 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.945911 B = 3115.641896 C = 4523.263313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.260 6.260 3 C -0.067 4.067 4 H 0.127 0.873 5 C -0.132 4.132 6 C 0.457 3.543 7 O -0.526 6.526 8 O -0.356 6.356 9 C 0.265 3.735 10 H 0.065 0.935 11 C -0.524 4.524 12 H 0.058 0.942 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.921 3.079 16 H -0.250 1.250 17 H -0.267 1.267 18 H -0.268 1.268 19 C -0.021 4.021 20 C -0.226 4.226 21 C -0.216 4.216 22 C -0.052 4.052 23 O -0.187 6.187 24 H 0.089 0.911 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.282 0.718 31 H 0.147 0.853 32 H 0.181 0.819 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 -4.899 11.213 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.035 6.035 3 C -0.197 4.197 4 H 0.145 0.855 5 C -0.191 4.191 6 C 0.300 3.700 7 O -0.415 6.415 8 O -0.273 6.273 9 C 0.212 3.788 10 H 0.083 0.917 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.151 4.151 14 N -0.536 5.536 15 Si 0.745 3.255 16 H -0.174 1.174 17 H -0.192 1.192 18 H -0.193 1.193 19 C -0.072 4.072 20 C -0.245 4.245 21 C -0.235 4.235 22 C -0.119 4.119 23 O -0.084 6.084 24 H 0.108 0.892 25 H 0.141 0.859 26 H 0.119 0.881 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.165 0.835 32 H 0.198 0.802 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -10.150 -5.820 11.016 16.070 hybrid contribution -0.361 0.512 -0.640 0.895 sum -10.511 -5.308 10.376 15.695 Atomic orbital electron populations 1.23651 0.89744 1.08305 1.06750 1.87554 1.11342 1.06477 1.98176 1.23136 0.91346 0.98551 1.06623 0.85459 1.21987 1.03769 1.01324 0.91989 1.23498 0.92084 0.81315 0.73095 1.90595 1.62166 1.42248 1.46516 1.86962 1.29244 1.35619 1.75492 1.19376 0.74649 0.97026 0.87721 0.91713 1.20886 1.38218 1.07169 0.89733 0.92390 1.25647 0.94442 0.99311 0.95655 1.69940 1.43917 1.38454 1.01287 0.86145 0.81117 0.79743 0.78526 1.17415 1.19245 1.19326 1.22844 0.96271 0.93877 0.94197 1.21806 0.98550 1.05981 0.98198 1.22112 1.01866 1.00718 0.98783 1.24982 0.91854 1.03899 0.91167 1.84025 1.46600 1.49073 1.28655 0.89176 0.85905 0.88064 0.87226 0.91470 0.90459 0.90837 0.83474 0.80184 0.73673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 10.45 113.37 1.19 -0.67 16 2 S -0.26 -7.74 21.04 -56.49 -1.19 -8.93 16 3 C -0.07 -2.16 3.29 29.85 0.10 -2.07 16 4 H 0.13 3.75 8.14 -2.39 -0.02 3.73 16 5 C -0.13 -3.22 9.08 71.98 0.65 -2.57 16 6 C 0.46 20.02 6.05 71.24 0.43 20.45 16 7 O -0.53 -25.66 15.26 21.97 0.34 -25.32 16 8 O -0.36 -17.36 8.18 -49.01 -0.40 -17.76 16 9 C 0.26 13.83 1.73 29.10 0.05 13.88 16 10 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 11 C -0.52 -30.70 9.34 25.60 0.24 -30.46 16 12 H 0.06 3.71 7.99 -2.92 -0.02 3.69 16 13 C 0.05 3.16 5.47 84.65 0.46 3.63 16 14 N -0.90 -53.56 13.96 21.45 0.30 -53.26 16 15 Si 0.92 45.10 25.56 68.60 1.75 46.85 16 16 H -0.25 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -13.62 6.45 99.48 0.64 -12.98 16 19 C -0.02 -1.02 6.13 24.83 0.15 -0.86 16 20 C -0.23 -9.41 10.81 22.19 0.24 -9.18 16 21 C -0.22 -7.04 10.91 22.19 0.24 -6.80 16 22 C -0.05 -1.66 12.09 66.97 0.81 -0.85 16 23 O -0.19 -8.03 10.64 0.14 0.00 -8.03 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.10 1.20 7.14 -2.39 -0.02 1.19 16 27 H 0.11 1.77 6.92 -2.39 -0.02 1.76 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 31 H 0.15 5.81 8.06 -2.91 -0.02 5.79 16 32 H 0.18 4.32 8.06 -2.91 -0.02 4.30 16 33 H 0.25 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -73.95 301.96 6.41 -67.53 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.05 Total: 14.43 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 4.56 Total: -15.51 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.30 Total: -53.26 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.06 Total: -51.12 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.75 Total: 46.85 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -1.19 Total: -8.93 kcal Total: -73.95 6.41 -67.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546820.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.591 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds