Wall clock time and date at job start Mon Mar 30 2020 00:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48494 * 109.47187 * 240.00233 * 3 2 1 5 5 H 1.48491 * 109.47389 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46770 * 120.00561 * 3 2 1 7 7 C 1.37877 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99717 * 359.97438 * 7 2 1 10 10 O 1.42906 * 113.28177 * 313.06803 * 9 7 2 11 11 C 1.53495 * 114.20591 * 180.02562 * 9 7 2 12 12 N 1.47066 * 87.98658 * 220.14538 * 11 9 7 13 13 C 1.34780 * 136.06263 * 206.86221 * 12 11 9 14 14 O 1.21716 * 119.99674 * 359.97438 * 13 12 11 15 15 C 1.46551 * 120.00385 * 180.02562 * 13 12 11 16 16 C 1.37928 * 126.23233 * 179.69079 * 15 13 12 17 17 C 1.39753 * 107.11934 * 179.84610 * 16 15 13 18 18 C 1.35662 * 107.88518 * 0.41373 * 17 16 15 19 19 Cl 1.73595 * 125.57250 * 179.76064 * 18 17 16 20 20 N 1.35575 * 108.84809 * 359.74508 * 18 17 16 21 21 H 0.96993 * 125.69236 * 180.02562 * 20 18 17 22 22 C 1.47067 * 87.88528 * 27.11900 * 12 11 9 23 23 H 0.96998 * 119.99931 * 359.97438 * 1 2 3 24 24 H 0.96695 * 113.99877 * 46.93303 * 10 9 7 25 25 H 1.09005 * 113.46950 * 105.37104 * 11 9 7 26 26 H 1.08994 * 113.52293 * 334.93588 * 11 9 7 27 27 H 1.07999 * 126.43990 * 359.96026 * 16 15 13 28 28 H 1.08002 * 126.05266 * 180.15356 * 17 16 15 29 29 H 1.09007 * 113.46858 * 87.65629 * 22 12 11 30 30 H 1.08993 * 113.47208 * 218.09965 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.1928 -2.5403 0.9588 11 6 2.1490 -3.7441 -0.0005 12 7 1.2075 -4.3593 -0.9481 13 6 0.8346 -5.6141 -1.2694 14 8 1.3366 -6.5635 -0.6966 15 6 -0.1743 -5.8353 -2.3090 16 6 -0.6443 -7.0576 -2.7420 17 6 -1.5935 -6.8048 -3.7360 18 6 -1.6795 -5.4605 -3.8977 19 17 -2.7181 -4.6432 -5.0232 20 7 -0.8219 -4.8600 -3.0363 21 1 -0.6871 -3.9037 -2.9465 22 6 0.8564 -3.0031 -1.3956 23 1 -0.4850 0.8400 0.0004 24 1 -0.3708 -1.7546 0.9566 25 1 2.1879 -4.2513 0.9636 26 1 3.1377 -3.5675 -0.4239 27 1 -0.3379 -8.0277 -2.3795 28 1 -2.1555 -7.5480 -4.2820 29 1 1.5006 -2.6280 -2.1910 30 1 -0.2035 -2.8800 -1.6178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346591796.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:02 Heat of formation + Delta-G solvation = -4.342665 kcal Electronic energy + Delta-G solvation = -18337.065377 eV Core-core repulsion = 15160.645876 eV Total energy + Delta-G solvation = -3176.419500 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.24888 -39.42082 -37.38835 -36.71536 -34.19093 -32.31883 -31.29025 -29.75871 -28.11008 -25.52614 -25.38164 -22.20244 -20.66985 -20.12025 -19.50577 -17.87770 -17.16265 -16.13954 -15.46276 -15.22048 -15.00064 -14.45370 -14.21286 -13.92894 -13.34293 -12.98164 -12.92520 -12.78423 -12.42744 -12.12196 -11.71123 -11.68256 -11.33572 -11.15969 -11.13803 -10.60904 -10.41214 -9.94196 -9.41067 -9.11476 -8.90521 -8.60171 -8.25669 -7.93184 -6.52642 -4.63833 1.50220 1.61222 2.59775 3.08646 3.15371 3.16515 3.26139 3.39573 3.68822 4.08533 4.67627 4.86046 5.21109 5.27571 5.41541 5.67006 5.88751 5.94831 6.07282 6.18220 6.23293 6.36857 6.43933 6.62216 6.80623 6.94676 7.20582 7.50698 7.65901 8.25032 8.40525 8.55343 9.08305 9.34993 10.54084 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.005673 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.081359 B = 4934.410138 C = 5956.470601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.245 3.755 10 O -0.569 6.569 11 C 0.110 3.890 12 N -0.635 5.635 13 C 0.607 3.393 14 O -0.546 6.546 15 C -0.011 4.011 16 C -0.113 4.113 17 C -0.179 4.179 18 C 0.078 3.922 19 Cl -0.022 7.022 20 N -0.527 5.527 21 H 0.423 0.577 22 C 0.061 3.939 23 H 0.276 0.724 24 H 0.395 0.605 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.087 0.913 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 -5.254 -8.250 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.738 3.262 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.092 0.908 9 C 0.203 3.797 10 O -0.382 6.382 11 C -0.012 4.012 12 N -0.368 5.368 13 C 0.397 3.603 14 O -0.425 6.425 15 C -0.126 4.126 16 C -0.139 4.139 17 C -0.205 4.205 18 C -0.065 4.065 19 Cl 0.006 6.994 20 N -0.129 5.129 21 H 0.266 0.734 22 C -0.063 4.063 23 H 0.086 0.914 24 H 0.251 0.749 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.174 0.826 28 H 0.170 0.830 29 H 0.105 0.895 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.122 -6.148 -7.909 10.493 hybrid contribution -0.055 2.071 -0.465 2.123 sum -3.176 -4.077 -8.374 9.840 Atomic orbital electron populations 1.69243 1.06255 1.28541 1.49853 1.25095 0.95051 1.00064 0.92797 0.86329 0.79480 0.81315 0.79108 1.19824 1.20921 1.19689 1.21383 0.93993 0.89559 1.52435 0.90754 1.19486 0.85427 0.91245 0.83521 1.86069 1.45144 1.48422 1.58597 1.23367 0.93676 0.91838 0.92302 1.49669 1.42494 1.04286 1.40346 1.16415 0.81123 0.81533 0.81241 1.90801 1.57082 1.40669 1.53915 1.20641 1.02699 0.88481 1.00761 1.21223 0.98052 0.96674 0.97983 1.20598 1.04299 0.92032 1.03566 1.21025 0.97709 0.91290 0.96524 1.98387 1.63534 1.79742 1.57694 1.42523 1.31264 1.10126 1.28977 0.73405 1.24406 0.99412 0.78486 1.03963 0.91369 0.74877 0.91032 0.89299 0.82630 0.83031 0.89532 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.78 11.01 55.43 0.61 -21.17 16 2 C 0.07 1.73 5.39 -17.82 -0.10 1.63 16 3 Si 0.91 18.66 29.54 -169.99 -5.02 13.64 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -12.77 8.70 -34.44 -0.30 -13.07 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.25 5.62 1.58 -91.26 -0.14 5.48 16 10 O -0.57 -14.22 13.54 -35.23 -0.48 -14.69 16 11 C 0.11 2.31 8.03 -8.51 -0.07 2.24 16 12 N -0.64 -13.08 3.69 -186.81 -0.69 -13.76 16 13 C 0.61 12.52 8.03 -12.91 -0.10 12.42 16 14 O -0.55 -12.52 17.66 5.17 0.09 -12.43 16 15 C -0.01 -0.20 7.02 -81.94 -0.58 -0.77 16 16 C -0.11 -1.72 10.65 -39.13 -0.42 -2.14 16 17 C -0.18 -2.36 10.78 -39.94 -0.43 -2.79 16 18 C 0.08 1.08 7.74 -16.82 -0.13 0.95 16 19 Cl -0.02 -0.26 29.30 -51.86 -1.52 -1.78 16 20 N -0.53 -8.22 5.92 -6.55 -0.04 -8.26 16 21 H 0.42 6.48 5.86 -40.82 -0.24 6.24 16 22 C 0.06 1.22 6.74 -8.51 -0.06 1.16 16 23 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 24 H 0.39 9.95 6.32 45.56 0.29 10.24 16 25 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 26 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 27 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 30 H 0.06 1.14 6.41 -51.93 -0.33 0.81 16 LS Contribution 281.83 15.07 4.25 4.25 Total: -1.00 -26.73 281.83 -7.06 -33.79 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -1.94 Total: 15.32 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.32 Total: 5.11 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.12 Total: -43.20 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.39 Total: -27.13 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.52 Total: -1.78 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.73 -7.06 -33.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346591796.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.445 kcal (2) G-P(sol) polarization free energy of solvation -26.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds