Wall clock time and date at job start Mon Mar 30 2020 00:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34235 * 116.99538 * 2 1 4 4 O 1.20822 * 120.00538 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99162 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47050 * 179.97438 * 5 3 2 7 7 C 1.36831 * 120.00473 * 270.00741 * 6 5 3 8 8 H 1.08001 * 120.00508 * 132.31618 * 7 6 5 9 9 C 1.39062 * 119.99464 * 312.31823 * 7 6 5 10 10 N 1.31365 * 119.99783 * 171.42351 * 9 7 6 11 11 Si 1.86799 * 120.00022 * 351.42121 * 9 7 6 12 12 H 1.48508 * 109.46984 * 95.04117 * 11 9 7 13 13 H 1.48501 * 109.46923 * 215.03717 * 11 9 7 14 14 H 1.48490 * 109.47216 * 335.04338 * 11 9 7 15 15 C 1.34782 * 119.99909 * 89.99751 * 6 5 3 16 16 O 1.21681 * 119.99770 * 4.09169 * 15 6 5 17 17 C 1.46963 * 120.00101 * 184.08658 * 15 6 5 18 18 C 1.38492 * 127.99726 * 174.34900 * 17 15 6 19 19 C 1.37550 * 111.24087 * 180.26475 * 18 17 15 20 20 N 1.29570 * 117.95947 * 359.97438 * 19 18 17 21 21 S 1.56314 * 110.39681 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.46897 * 299.99667 * 1 2 3 23 23 H 1.09006 * 109.46892 * 59.99633 * 1 2 3 24 24 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47302 * 60.00577 * 5 3 2 26 26 H 1.09001 * 109.47689 * 300.00146 * 5 3 2 27 27 H 0.97000 * 120.00237 * 180.02562 * 10 9 7 28 28 H 1.07999 * 124.38270 * 0.23754 * 18 17 15 29 29 H 1.08002 * 121.01981 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1761 3.3352 -1.1854 8 1 3.7442 4.3131 -1.3390 9 6 4.9299 2.7420 -2.1924 10 7 4.9781 3.2892 -3.3856 11 14 5.8738 1.1673 -1.8481 12 1 5.0553 -0.0009 -2.2616 13 1 7.1465 1.1757 -2.6132 14 1 6.1698 1.0750 -0.3959 15 6 4.1723 3.3267 1.1668 16 8 4.0720 2.7249 2.2195 17 6 4.5013 4.7591 1.1676 18 6 4.6244 5.6049 2.2573 19 6 4.9381 6.8845 1.8620 20 7 5.0695 7.1134 0.5934 21 16 4.8259 5.8038 -0.2245 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.9564 0.7807 -0.8892 26 1 3.9557 0.7809 0.8908 27 1 5.5036 2.8754 -4.0881 28 1 4.4910 5.2995 3.2846 29 1 5.0709 7.6742 2.5867 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346836680.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:29 Heat of formation + Delta-G solvation = -56.708421 kcal Electronic energy + Delta-G solvation = -18743.714790 eV Core-core repulsion = 15567.068246 eV Total energy + Delta-G solvation = -3176.646543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15274 -38.93221 -38.06041 -36.02022 -35.05282 -32.36983 -30.93066 -29.01098 -26.86638 -25.66871 -24.41190 -21.67153 -20.41744 -19.23828 -18.00094 -17.56406 -17.18369 -16.27472 -15.95925 -15.63585 -15.15232 -14.84895 -14.38968 -13.75417 -13.48697 -13.30351 -12.96841 -12.73376 -12.49380 -12.32644 -11.99691 -11.72020 -11.34260 -10.86697 -10.47157 -10.44651 -10.36130 -10.03308 -9.72031 -9.35851 -9.06772 -8.89635 -8.13597 -7.97714 -6.78037 -4.60289 1.13462 2.27751 2.70865 2.77840 2.85299 2.92044 3.03821 3.05535 3.07422 3.81244 3.94772 4.05352 4.64422 5.26808 5.33077 5.36701 5.46411 5.56302 5.68117 5.70725 5.72881 5.93575 6.34027 6.52771 6.72626 6.94889 7.29050 7.66958 7.82347 8.25461 8.54215 8.87421 9.22442 10.27140 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.009123 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.488502 B = 3068.453326 C = 3970.038839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.488 6.488 5 C 0.112 3.888 6 N -0.444 5.444 7 C -0.355 4.355 8 H 0.115 0.885 9 C 0.080 3.920 10 N -0.834 5.834 11 Si 0.870 3.130 12 H -0.263 1.263 13 H -0.275 1.275 14 H -0.251 1.251 15 C 0.574 3.426 16 O -0.576 6.576 17 C -0.244 4.244 18 C -0.149 4.149 19 C 0.041 3.959 20 N -0.594 5.594 21 S 0.524 5.476 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.284 0.716 28 H 0.159 0.841 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -3.624 3.677 5.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.289 3.711 4 O -0.373 6.373 5 C -0.013 4.013 6 N -0.166 5.166 7 C -0.488 4.488 8 H 0.132 0.868 9 C -0.133 4.133 10 N -0.466 5.466 11 Si 0.695 3.305 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.175 1.175 15 C 0.365 3.635 16 O -0.460 6.460 17 C -0.378 4.378 18 C -0.185 4.185 19 C -0.149 4.149 20 N -0.424 5.424 21 S 0.684 5.316 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.136 0.864 27 H 0.095 0.905 28 H 0.177 0.823 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.751 -2.708 1.999 3.794 hybrid contribution -0.107 -1.065 1.734 2.038 sum -1.859 -3.773 3.733 5.623 Atomic orbital electron populations 1.23160 0.77308 1.02961 1.02345 1.86516 1.22825 1.34267 1.84863 1.24621 0.92719 0.81314 0.72420 1.90632 1.66569 1.36246 1.43820 1.21339 0.86961 0.87855 1.05159 1.43101 1.58617 1.08651 1.06198 1.19060 1.34235 1.04294 0.91205 0.86796 1.25505 0.94752 0.98393 0.94625 1.69616 1.36212 1.39353 1.01426 0.86945 0.80451 0.82398 0.80663 1.18957 1.20097 1.17504 1.16905 0.78535 0.84668 0.83441 1.90682 1.56202 1.67660 1.31502 1.26569 1.11299 0.99549 1.00392 1.21864 1.03881 0.92366 1.00373 1.21840 1.04284 0.96792 0.91972 1.71973 1.24092 1.34776 1.11524 1.83422 1.50809 0.87961 1.09417 0.92259 0.92109 0.88608 0.87724 0.86391 0.90487 0.82301 0.82419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 15 2 O -0.37 -6.40 10.57 -39.27 -0.41 -6.81 15 3 C 0.45 9.33 8.02 36.00 0.29 9.62 15 4 O -0.49 -11.49 16.18 -18.75 -0.30 -11.79 15 5 C 0.11 2.33 4.59 -5.19 -0.02 2.31 15 6 N -0.44 -10.40 1.55 -117.48 -0.18 -10.58 15 7 C -0.35 -8.60 7.68 -15.02 -0.12 -8.72 15 8 H 0.12 2.91 5.46 -33.47 -0.18 2.73 15 9 C 0.08 1.90 5.45 -17.45 -0.10 1.81 15 10 N -0.83 -20.56 13.95 55.50 0.77 -19.79 15 11 Si 0.87 17.88 24.74 -169.99 -4.21 13.68 15 12 H -0.26 -5.10 6.90 56.52 0.39 -4.71 15 13 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 14 H -0.25 -5.16 6.90 56.52 0.39 -4.77 15 15 C 0.57 13.62 7.62 -12.72 -0.10 13.52 15 16 O -0.58 -14.28 16.52 5.21 0.09 -14.19 15 17 C -0.24 -5.31 6.53 -35.96 -0.23 -5.54 15 18 C -0.15 -2.78 10.41 -39.74 -0.41 -3.20 15 19 C 0.04 0.72 11.14 -18.76 -0.21 0.51 15 20 N -0.59 -11.73 11.29 21.68 0.24 -11.48 15 21 S 0.52 10.92 19.11 -107.50 -2.05 8.87 15 22 H 0.06 0.79 8.13 -51.93 -0.42 0.36 15 23 H 0.06 0.82 8.13 -51.93 -0.42 0.39 15 24 H 0.10 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.11 2.09 3.63 -51.93 -0.19 1.90 15 26 H 0.12 2.28 7.37 -51.93 -0.38 1.90 15 27 H 0.28 6.47 8.31 -40.82 -0.34 6.13 15 28 H 0.16 2.65 8.06 -52.49 -0.42 2.23 15 29 H 0.16 2.18 8.06 -52.49 -0.42 1.76 15 LS Contribution 272.11 15.07 4.10 4.10 Total: -1.00 -29.11 272.11 -3.81 -32.92 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -2.02 Total: 3.21 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 0.17 Total: 11.86 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.84 Total: -41.85 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.63 Total: -32.79 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -4.21 Total: 13.68 kcal Atomic # 16 Polarization: 10.92 SS G_CDS: -2.05 Total: 8.87 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.11 -3.81 -32.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346836680.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.789 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds