Wall clock time and date at job start Mon Mar 30 2020 00:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34235 * 116.99538 * 2 1 4 4 O 1.20822 * 120.00538 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99162 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47050 * 179.97438 * 5 3 2 7 7 C 1.36831 * 120.00473 * 270.00741 * 6 5 3 8 8 H 1.08001 * 120.00508 * 132.31618 * 7 6 5 9 9 C 1.39062 * 119.99464 * 312.31823 * 7 6 5 10 10 N 1.31365 * 119.99783 * 171.42351 * 9 7 6 11 11 Si 1.86799 * 120.00022 * 351.42121 * 9 7 6 12 12 H 1.48508 * 109.46984 * 95.04117 * 11 9 7 13 13 H 1.48501 * 109.46923 * 215.03717 * 11 9 7 14 14 H 1.48490 * 109.47216 * 335.04338 * 11 9 7 15 15 C 1.34782 * 119.99909 * 89.99751 * 6 5 3 16 16 O 1.21681 * 119.99770 * 4.09169 * 15 6 5 17 17 C 1.46963 * 120.00101 * 184.08658 * 15 6 5 18 18 C 1.38492 * 127.99726 * 174.34900 * 17 15 6 19 19 C 1.37550 * 111.24087 * 180.26475 * 18 17 15 20 20 N 1.29570 * 117.95947 * 359.97438 * 19 18 17 21 21 S 1.56314 * 110.39681 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.46897 * 299.99667 * 1 2 3 23 23 H 1.09006 * 109.46892 * 59.99633 * 1 2 3 24 24 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47302 * 60.00577 * 5 3 2 26 26 H 1.09001 * 109.47689 * 300.00146 * 5 3 2 27 27 H 0.97000 * 120.00237 * 180.02562 * 10 9 7 28 28 H 1.07999 * 124.38270 * 0.23754 * 18 17 15 29 29 H 1.08002 * 121.01981 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1761 3.3352 -1.1854 8 1 3.7442 4.3131 -1.3390 9 6 4.9299 2.7420 -2.1924 10 7 4.9781 3.2892 -3.3856 11 14 5.8738 1.1673 -1.8481 12 1 5.0553 -0.0009 -2.2616 13 1 7.1465 1.1757 -2.6132 14 1 6.1698 1.0750 -0.3959 15 6 4.1723 3.3267 1.1668 16 8 4.0720 2.7249 2.2195 17 6 4.5013 4.7591 1.1676 18 6 4.6244 5.6049 2.2573 19 6 4.9381 6.8845 1.8620 20 7 5.0695 7.1134 0.5934 21 16 4.8259 5.8038 -0.2245 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.9564 0.7807 -0.8892 26 1 3.9557 0.7809 0.8908 27 1 5.5036 2.8754 -4.0881 28 1 4.4910 5.2995 3.2846 29 1 5.0709 7.6742 2.5867 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346836680.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:29 Heat of formation + Delta-G solvation = -76.051214 kcal Electronic energy + Delta-G solvation = -18744.553556 eV Core-core repulsion = 15567.068246 eV Total energy + Delta-G solvation = -3177.485310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.76932 -40.58670 -39.62552 -37.59832 -36.81952 -34.17306 -32.53526 -30.54945 -28.15524 -27.41287 -26.02087 -23.23530 -22.01333 -20.94732 -19.64758 -19.19169 -18.81641 -17.83208 -17.46195 -17.23597 -16.82514 -16.48807 -16.05247 -15.32836 -15.03826 -14.80808 -14.49489 -14.36852 -14.05820 -13.93243 -13.56110 -13.07322 -12.98055 -12.51469 -12.08082 -11.98464 -11.82325 -11.69851 -11.36392 -11.04091 -10.82637 -10.51514 -9.89480 -9.56778 -8.57100 -6.45031 -0.46873 0.67566 1.09402 1.18352 1.30132 1.35473 1.40253 1.45826 1.60981 2.12587 2.22961 2.40040 2.86898 3.77135 3.88294 3.96078 4.15887 4.25322 4.30916 4.31518 4.38673 4.65850 4.88528 5.09544 5.17702 5.27884 5.80143 5.89356 5.97196 6.68794 6.73261 7.06605 7.43126 8.50886 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.009123 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.488502 B = 3068.453326 C = 3970.038839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.453 3.547 4 O -0.524 6.524 5 C 0.103 3.897 6 N -0.451 5.451 7 C -0.363 4.363 8 H 0.095 0.905 9 C 0.049 3.951 10 N -0.868 5.868 11 Si 0.911 3.089 12 H -0.240 1.240 13 H -0.272 1.272 14 H -0.252 1.252 15 C 0.566 3.434 16 O -0.596 6.596 17 C -0.277 4.277 18 C -0.130 4.130 19 C 0.054 3.946 20 N -0.597 5.597 21 S 0.490 5.510 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.141 0.859 25 H 0.115 0.885 26 H 0.133 0.867 27 H 0.290 0.710 28 H 0.183 0.817 29 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 -4.383 4.878 6.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.295 3.705 4 O -0.412 6.412 5 C -0.021 4.021 6 N -0.171 5.171 7 C -0.495 4.495 8 H 0.112 0.888 9 C -0.161 4.161 10 N -0.501 5.501 11 Si 0.734 3.266 12 H -0.165 1.165 13 H -0.197 1.197 14 H -0.175 1.175 15 C 0.357 3.643 16 O -0.481 6.481 17 C -0.410 4.410 18 C -0.167 4.167 19 C -0.137 4.137 20 N -0.426 5.426 21 S 0.650 5.350 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.159 0.841 25 H 0.132 0.868 26 H 0.151 0.849 27 H 0.100 0.900 28 H 0.200 0.800 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.678 -3.510 3.159 5.012 hybrid contribution -0.217 -0.752 1.473 1.668 sum -1.895 -4.262 4.632 6.574 Atomic orbital electron populations 1.23575 0.74753 1.05937 1.02259 1.86489 1.25186 1.32120 1.84011 1.24515 0.92724 0.81706 0.71603 1.90617 1.67285 1.37588 1.45716 1.21492 0.87546 0.86794 1.06282 1.43155 1.58685 1.09495 1.05804 1.18966 1.34675 1.04223 0.91650 0.88832 1.26021 0.95058 1.00902 0.94145 1.69677 1.37269 1.40934 1.02250 0.86296 0.79748 0.80105 0.80486 1.16500 1.19742 1.17523 1.17234 0.78240 0.85495 0.83332 1.90643 1.57331 1.68315 1.31854 1.26643 1.13485 0.99282 1.01631 1.22289 1.01485 0.92136 1.00765 1.22475 1.01849 0.97438 0.91933 1.72120 1.24381 1.33578 1.12557 1.83528 1.52350 0.88787 1.10374 0.92298 0.92362 0.84073 0.86796 0.84912 0.89975 0.79960 0.77754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.88 15 2 O -0.36 -11.98 10.57 -51.46 -0.54 -12.52 15 3 C 0.45 18.58 8.02 71.24 0.57 19.15 15 4 O -0.52 -24.89 16.18 21.97 0.36 -24.53 15 5 C 0.10 4.24 4.59 85.63 0.39 4.63 15 6 N -0.45 -21.18 1.55 -643.82 -0.99 -22.18 15 7 C -0.36 -17.94 7.68 84.11 0.65 -17.29 15 8 H 0.09 4.98 5.46 -15.00 -0.08 4.90 15 9 C 0.05 2.33 5.45 84.96 0.46 2.79 15 10 N -0.87 -43.49 13.95 21.68 0.30 -43.19 15 11 Si 0.91 35.90 24.74 68.60 1.70 37.60 15 12 H -0.24 -8.53 6.90 99.48 0.69 -7.84 15 13 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 14 H -0.25 -9.87 6.90 99.48 0.69 -9.18 15 15 C 0.57 26.88 7.62 86.53 0.66 27.54 15 16 O -0.60 -29.26 16.52 -4.29 -0.07 -29.33 15 17 C -0.28 -11.96 6.53 24.62 0.16 -11.80 15 18 C -0.13 -4.59 10.41 22.17 0.23 -4.36 15 19 C 0.05 1.72 11.14 84.86 0.95 2.67 15 20 N -0.60 -22.76 11.29 -85.33 -0.96 -23.72 15 21 S 0.49 20.63 19.11 -56.49 -1.08 19.55 15 22 H 0.06 1.47 8.13 -2.39 -0.02 1.45 15 23 H 0.06 1.48 8.13 -2.38 -0.02 1.46 15 24 H 0.14 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.11 4.40 3.63 -2.39 -0.01 4.39 15 26 H 0.13 4.99 7.37 -2.39 -0.02 4.97 15 27 H 0.29 13.32 8.31 -92.71 -0.77 12.55 15 28 H 0.18 5.52 8.06 -2.91 -0.02 5.50 15 29 H 0.21 4.65 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -62.97 272.11 5.07 -57.90 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.10 Total: 15.21 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 5.27 Total: 25.22 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -1.66 Total: -89.09 kcal Atomic # 8 Polarization: -66.13 SS G_CDS: -0.26 Total: -66.39 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 1.70 Total: 37.60 kcal Atomic # 16 Polarization: 20.63 SS G_CDS: -1.08 Total: 19.55 kcal Total: -62.97 5.07 -57.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346836680.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.147 kcal (2) G-P(sol) polarization free energy of solvation -62.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds