Wall clock time and date at job start Mon Mar 30 2020 01:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 S 1.81408 * 109.47067 * 270.35754 * 3 2 1 5 5 C 1.81396 * 102.99923 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.46988 * 179.97438 * 5 4 3 7 7 O 1.20821 * 120.00162 * 0.02562 * 6 5 4 8 8 O 1.34232 * 120.00155 * 179.97438 * 6 5 4 9 9 C 1.45192 * 117.00002 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.46863 * 180.02562 * 9 8 6 11 11 C 1.50696 * 113.56612 * 51.06869 * 10 9 8 12 12 H 1.08003 * 119.99709 * 249.36942 * 11 10 9 13 13 C 1.37879 * 120.00166 * 69.37354 * 11 10 9 14 14 N 1.31510 * 119.99725 * 5.64533 * 13 11 10 15 15 Si 1.86793 * 119.99912 * 185.64472 * 13 11 10 16 16 H 1.48506 * 109.47391 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47472 * 120.00081 * 15 13 11 18 18 H 1.48498 * 109.47422 * 239.99895 * 15 13 11 19 19 C 1.53363 * 114.56196 * 185.34306 * 10 9 8 20 20 O 1.43359 * 88.49717 * 86.63106 * 19 10 9 21 21 C 1.43352 * 88.31649 * 28.12517 * 20 19 10 22 22 H 4.62822 * 6.06357 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.47230 * 150.35647 * 3 2 1 24 24 H 1.09001 * 109.47732 * 30.35406 * 3 2 1 25 25 H 1.09001 * 109.47214 * 59.99867 * 5 4 3 26 26 H 1.08998 * 109.47462 * 299.99573 * 5 4 3 27 27 H 1.08996 * 109.47611 * 60.00384 * 9 8 6 28 28 H 1.09007 * 109.47315 * 299.99704 * 9 8 6 29 29 H 0.97006 * 119.99715 * 179.97438 * 14 13 11 30 30 H 1.09000 * 113.39967 * 331.70989 * 19 10 9 31 31 H 1.09008 * 113.39097 * 201.54728 * 19 10 9 32 32 H 1.08996 * 113.39159 * 86.75309 * 21 20 19 33 33 H 1.09000 * 113.38801 * 216.90465 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2506 -0.0097 1.7103 5 6 5.0530 -0.0069 1.5059 6 6 5.7123 -0.0143 2.8611 7 8 5.0357 -0.0214 3.8620 8 8 7.0513 -0.0142 2.9561 9 6 7.6172 -0.0222 4.2932 10 6 9.1444 -0.0201 4.2005 11 6 9.6922 1.0607 3.3045 12 1 10.1545 0.7995 2.3640 13 6 9.6034 2.3828 3.6855 14 7 9.1426 2.6942 4.8772 15 14 10.1377 3.7316 2.5089 16 1 10.6141 3.1226 1.2410 17 1 8.9868 4.6263 2.2259 18 1 11.2366 4.5186 3.1241 19 6 9.8650 -0.1579 5.5473 20 8 9.7663 -1.5816 5.4117 21 6 9.7726 -1.4041 3.9892 22 1 -1.0500 0.0002 0.0000 23 1 3.0089 0.8940 -0.5083 24 1 3.0098 -0.8859 -0.5193 25 1 5.3554 0.8869 0.9600 26 1 5.3570 -0.8931 0.9488 27 1 7.2862 -0.9156 4.8226 28 1 7.2851 0.8644 4.8336 29 1 9.0805 3.6244 5.1454 30 1 9.2930 0.2375 6.3867 31 1 10.8915 0.2085 5.5284 32 1 10.7748 -1.3631 3.5627 33 1 9.1202 -2.1011 3.4633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349045035.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:48 Heat of formation + Delta-G solvation = -38.035322 kcal Electronic energy + Delta-G solvation = -18031.416534 eV Core-core repulsion = 14959.120060 eV Total energy + Delta-G solvation = -3072.296474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07446 -39.34133 -35.81057 -34.23944 -33.04999 -30.73246 -29.67058 -28.68062 -25.49659 -25.09482 -24.40128 -20.84545 -18.83194 -18.60864 -17.30002 -16.85811 -16.37955 -16.09869 -15.42167 -15.10570 -14.78668 -14.66485 -14.54195 -14.18607 -13.99160 -13.47676 -13.37842 -12.44301 -12.19081 -11.83622 -11.43373 -11.15145 -10.99672 -10.85617 -10.67742 -10.60158 -10.55004 -10.06475 -9.93870 -9.88336 -9.08458 -9.00189 -8.74683 -8.53172 -7.79550 -6.21734 -4.25979 0.96879 2.21551 2.54311 2.63236 2.93195 3.20120 3.29032 3.29850 3.32762 3.99797 4.29350 4.90280 4.96059 5.01025 5.05715 5.09478 5.15530 5.27423 5.63141 5.77429 5.98158 6.20843 6.31418 6.43061 6.59474 6.79247 7.02700 7.07494 7.25122 7.29222 7.29686 7.74252 8.07489 8.30941 8.71921 9.39825 10.87487 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020615 B = 0.004702 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.894992 B = 5953.141688 C = 6840.006114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.177 4.177 3 C 0.000 4.000 4 S -0.163 6.163 5 C -0.105 4.105 6 C 0.471 3.529 7 O -0.502 6.502 8 O -0.325 6.325 9 C 0.109 3.891 10 C 0.021 3.979 11 C -0.506 4.506 12 H 0.066 0.934 13 C 0.069 3.931 14 N -0.887 5.887 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.060 3.940 20 O -0.402 6.402 21 C 0.030 3.970 22 H 0.223 0.777 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.264 0.736 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.423 -4.134 -9.512 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.178 4.178 3 C -0.146 4.146 4 S 0.066 5.934 5 C -0.254 4.254 6 C 0.312 3.688 7 O -0.391 6.391 8 O -0.240 6.240 9 C 0.035 3.965 10 C 0.021 3.979 11 C -0.544 4.544 12 H 0.085 0.915 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.017 4.017 20 O -0.322 6.322 21 C -0.047 4.047 22 H 0.240 0.760 23 H 0.125 0.875 24 H 0.124 0.876 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.126 -4.210 -7.920 13.527 hybrid contribution 0.837 1.050 -1.688 2.157 sum -9.289 -3.160 -9.607 13.732 Atomic orbital electron populations 1.24876 0.95741 1.00235 0.98549 1.21717 0.92958 1.01269 1.01903 1.20279 0.89125 1.06387 0.98852 1.87843 1.00826 1.98137 1.06635 1.23109 0.95421 1.08720 0.98133 1.22278 0.82746 0.73793 0.90023 1.90671 1.64957 1.45329 1.38136 1.86480 1.19316 1.81983 1.36246 1.22873 0.94404 1.01020 0.78167 1.20426 0.89267 0.93130 0.95102 1.20761 1.38624 0.90008 1.05003 0.91548 1.24964 0.94636 0.98702 0.95059 1.69918 1.45687 1.18653 1.18148 0.86495 0.78289 0.81754 0.81272 1.19563 1.20908 1.20951 1.23618 1.00288 0.78414 0.99347 1.89643 1.95179 1.25784 1.21590 1.23843 1.00150 0.97916 0.82761 0.75991 0.87543 0.87590 0.85832 0.86029 0.93463 0.89819 0.92580 0.90945 0.90691 0.91072 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 19.25 29.55 0.57 -1.02 16 2 C -0.18 -1.91 13.35 -37.12 -0.50 -2.41 16 3 C 0.00 0.00 6.42 34.37 0.22 0.22 16 4 S -0.16 -2.27 20.83 -107.50 -2.24 -4.51 16 5 C -0.11 -1.42 6.54 36.01 0.24 -1.19 16 6 C 0.47 9.00 7.98 36.01 0.29 9.29 16 7 O -0.50 -11.04 15.61 -18.75 -0.29 -11.33 16 8 O -0.33 -6.96 9.79 -39.26 -0.38 -7.34 16 9 C 0.11 2.53 4.83 37.16 0.18 2.71 16 10 C 0.02 0.51 0.76 -155.24 -0.12 0.39 16 11 C -0.51 -12.78 8.01 -34.44 -0.28 -13.06 16 12 H 0.07 1.66 7.82 -52.48 -0.41 1.25 16 13 C 0.07 1.78 5.36 -17.82 -0.10 1.69 16 14 N -0.89 -23.65 12.09 55.43 0.67 -22.98 16 15 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.06 1.39 7.19 24.59 0.18 1.57 16 20 O -0.40 -9.08 12.57 -35.23 -0.44 -9.53 16 21 C 0.03 0.64 7.89 24.64 0.19 0.83 16 22 H 0.22 1.17 7.80 -54.09 -0.42 0.75 16 23 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 24 H 0.11 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.12 1.45 8.14 -51.92 -0.42 1.02 16 26 H 0.12 1.29 8.14 -51.92 -0.42 0.86 16 27 H 0.05 1.07 7.96 -51.93 -0.41 0.66 16 28 H 0.08 2.15 7.58 -51.92 -0.39 1.76 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.07 1.70 8.13 -51.93 -0.42 1.28 16 31 H 0.07 1.74 8.10 -51.92 -0.42 1.32 16 32 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 33 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -30.18 313.83 -6.25 -36.44 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.15 Total: 0.46 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 0.88 Total: -0.97 kcal Atomic # 7 Polarization: -23.65 SS G_CDS: 0.67 Total: -22.98 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.12 Total: -28.20 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.24 Total: -4.51 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.18 -6.25 -36.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349045035.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.599 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds