Wall clock time and date at job start Mon Mar 30 2020 01:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 S 1.81408 * 109.47067 * 270.35754 * 3 2 1 5 5 C 1.81396 * 102.99923 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.46988 * 179.97438 * 5 4 3 7 7 O 1.20821 * 120.00162 * 0.02562 * 6 5 4 8 8 O 1.34232 * 120.00155 * 179.97438 * 6 5 4 9 9 C 1.45192 * 117.00002 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.46863 * 180.02562 * 9 8 6 11 11 C 1.50696 * 113.56612 * 51.06869 * 10 9 8 12 12 H 1.08003 * 119.99709 * 249.36942 * 11 10 9 13 13 C 1.37879 * 120.00166 * 69.37354 * 11 10 9 14 14 N 1.31510 * 119.99725 * 5.64533 * 13 11 10 15 15 Si 1.86793 * 119.99912 * 185.64472 * 13 11 10 16 16 H 1.48506 * 109.47391 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47472 * 120.00081 * 15 13 11 18 18 H 1.48498 * 109.47422 * 239.99895 * 15 13 11 19 19 C 1.53363 * 114.56196 * 185.34306 * 10 9 8 20 20 O 1.43359 * 88.49717 * 86.63106 * 19 10 9 21 21 C 1.43352 * 88.31649 * 28.12517 * 20 19 10 22 22 H 4.62822 * 6.06357 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.47230 * 150.35647 * 3 2 1 24 24 H 1.09001 * 109.47732 * 30.35406 * 3 2 1 25 25 H 1.09001 * 109.47214 * 59.99867 * 5 4 3 26 26 H 1.08998 * 109.47462 * 299.99573 * 5 4 3 27 27 H 1.08996 * 109.47611 * 60.00384 * 9 8 6 28 28 H 1.09007 * 109.47315 * 299.99704 * 9 8 6 29 29 H 0.97006 * 119.99715 * 179.97438 * 14 13 11 30 30 H 1.09000 * 113.39967 * 331.70989 * 19 10 9 31 31 H 1.09008 * 113.39097 * 201.54728 * 19 10 9 32 32 H 1.08996 * 113.39159 * 86.75309 * 21 20 19 33 33 H 1.09000 * 113.38801 * 216.90465 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2506 -0.0097 1.7103 5 6 5.0530 -0.0069 1.5059 6 6 5.7123 -0.0143 2.8611 7 8 5.0357 -0.0214 3.8620 8 8 7.0513 -0.0142 2.9561 9 6 7.6172 -0.0222 4.2932 10 6 9.1444 -0.0201 4.2005 11 6 9.6922 1.0607 3.3045 12 1 10.1545 0.7995 2.3640 13 6 9.6034 2.3828 3.6855 14 7 9.1426 2.6942 4.8772 15 14 10.1377 3.7316 2.5089 16 1 10.6141 3.1226 1.2410 17 1 8.9868 4.6263 2.2259 18 1 11.2366 4.5186 3.1241 19 6 9.8650 -0.1579 5.5473 20 8 9.7663 -1.5816 5.4117 21 6 9.7726 -1.4041 3.9892 22 1 -1.0500 0.0002 0.0000 23 1 3.0089 0.8940 -0.5083 24 1 3.0098 -0.8859 -0.5193 25 1 5.3554 0.8869 0.9600 26 1 5.3570 -0.8931 0.9488 27 1 7.2862 -0.9156 4.8226 28 1 7.2851 0.8644 4.8336 29 1 9.0805 3.6244 5.1454 30 1 9.2930 0.2375 6.3867 31 1 10.8915 0.2085 5.5284 32 1 10.7748 -1.3631 3.5627 33 1 9.1202 -2.1011 3.4633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349045035.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:47 Heat of formation + Delta-G solvation = -55.721663 kcal Electronic energy + Delta-G solvation = -18032.183471 eV Core-core repulsion = 14959.120060 eV Total energy + Delta-G solvation = -3073.063411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.79716 -41.02151 -37.47944 -34.97035 -34.94470 -32.23228 -31.23018 -29.44914 -27.32322 -26.87903 -26.26684 -22.36105 -20.60018 -19.50358 -18.97147 -18.45688 -17.69580 -17.56692 -16.97105 -16.87067 -16.34158 -16.01025 -15.79416 -15.50291 -15.36156 -14.70200 -14.47868 -14.05082 -13.82991 -13.54513 -13.21500 -12.94524 -12.81912 -12.55201 -12.29308 -11.72403 -11.67469 -11.63688 -11.31950 -10.93967 -10.85122 -10.82223 -10.58939 -10.42694 -8.84019 -8.16286 -6.25824 -0.00469 1.13579 1.27276 1.43361 1.47807 1.57494 1.79468 1.82485 2.24966 2.43702 3.14597 3.30652 3.35421 3.57486 3.97482 4.00876 4.17329 4.22019 4.26308 4.39591 4.39883 4.60978 4.65914 4.76522 4.94712 5.02330 5.21370 5.35053 5.41055 5.60788 5.76355 6.18041 6.58864 6.70532 6.76388 7.42578 8.92170 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020615 B = 0.004702 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.894992 B = 5953.141688 C = 6840.006114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.224 4.224 3 C 0.021 3.979 4 S -0.233 6.233 5 C -0.086 4.086 6 C 0.463 3.537 7 O -0.537 6.537 8 O -0.331 6.331 9 C 0.121 3.879 10 C 0.007 3.993 11 C -0.512 4.512 12 H 0.069 0.931 13 C 0.026 3.974 14 N -0.915 5.915 15 Si 0.952 3.048 16 H -0.260 1.260 17 H -0.287 1.287 18 H -0.284 1.284 19 C 0.064 3.936 20 O -0.407 6.407 21 C 0.039 3.961 22 H 0.254 0.746 23 H 0.125 0.875 24 H 0.130 0.870 25 H 0.147 0.853 26 H 0.158 0.842 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.262 0.738 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.730 -4.478 -12.026 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.225 4.225 3 C -0.126 4.126 4 S -0.005 6.005 5 C -0.234 4.234 6 C 0.307 3.693 7 O -0.428 6.428 8 O -0.247 6.247 9 C 0.047 3.953 10 C 0.006 3.994 11 C -0.549 4.549 12 H 0.087 0.913 13 C -0.174 4.174 14 N -0.553 5.553 15 Si 0.778 3.222 16 H -0.184 1.184 17 H -0.213 1.213 18 H -0.210 1.210 19 C -0.013 4.013 20 O -0.327 6.327 21 C -0.038 4.038 22 H 0.271 0.729 23 H 0.143 0.857 24 H 0.148 0.852 25 H 0.165 0.835 26 H 0.176 0.824 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.424 -4.570 -10.452 15.453 hybrid contribution 0.807 1.125 -0.928 1.666 sum -9.618 -3.445 -11.380 15.292 Atomic orbital electron populations 1.25797 0.96737 0.98817 0.96422 1.22243 0.93944 1.02740 1.03619 1.20316 0.88702 1.08444 0.95090 1.88084 1.01969 1.98402 1.12044 1.23101 0.94172 1.11469 0.94626 1.23361 0.81727 0.72231 0.92014 1.90657 1.65302 1.46751 1.40042 1.86478 1.20950 1.82418 1.34810 1.22511 0.94493 0.99266 0.79079 1.20519 0.89371 0.94426 0.95061 1.20997 1.38242 0.90558 1.05143 0.91303 1.25640 0.94865 1.00713 0.96224 1.70037 1.46889 1.18760 1.19621 0.85591 0.77580 0.79180 0.79858 1.18374 1.21295 1.20995 1.23499 0.99943 0.78820 0.99009 1.89634 1.95232 1.25146 1.22706 1.23886 1.01061 0.96692 0.82138 0.72943 0.85707 0.85239 0.83543 0.82434 0.93588 0.93180 0.92864 0.92201 0.90878 0.89636 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 19.25 74.32 1.43 -1.08 16 2 C -0.22 -4.40 13.35 31.12 0.42 -3.99 16 3 C 0.02 0.35 6.42 70.18 0.45 0.80 16 4 S -0.23 -6.28 20.83 -56.49 -1.18 -7.45 16 5 C -0.09 -2.15 6.54 71.24 0.47 -1.68 16 6 C 0.46 17.56 7.98 71.24 0.57 18.13 16 7 O -0.54 -24.12 15.61 21.98 0.34 -23.78 16 8 O -0.33 -14.03 9.79 -51.43 -0.50 -14.54 16 9 C 0.12 5.70 4.83 71.98 0.35 6.05 16 10 C 0.01 0.33 0.76 -52.65 -0.04 0.29 16 11 C -0.51 -25.46 8.01 25.60 0.21 -25.25 16 12 H 0.07 3.33 7.82 -2.91 -0.02 3.31 16 13 C 0.03 1.31 5.36 84.66 0.45 1.77 16 14 N -0.92 -49.48 12.09 21.45 0.26 -49.22 16 15 Si 0.95 40.63 29.54 68.60 2.03 42.66 16 16 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 17 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 C 0.06 2.99 7.19 63.84 0.46 3.45 16 20 O -0.41 -18.11 12.57 -148.98 -1.87 -19.98 16 21 C 0.04 1.57 7.89 63.87 0.50 2.08 16 22 H 0.25 1.89 7.80 -4.42 -0.03 1.86 16 23 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.15 3.02 8.14 -2.39 -0.02 3.00 16 26 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.05 2.13 7.96 -2.39 -0.02 2.11 16 28 H 0.05 2.67 7.58 -2.38 -0.02 2.66 16 29 H 0.26 13.71 8.31 -92.70 -0.77 12.94 16 30 H 0.06 2.90 8.13 -2.39 -0.02 2.88 16 31 H 0.07 3.40 8.10 -2.38 -0.02 3.38 16 32 H 0.09 3.23 8.10 -2.39 -0.02 3.22 16 33 H 0.08 3.02 8.13 -2.39 -0.02 3.00 16 Total: -1.00 -65.68 313.83 5.44 -60.24 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.10 Total: 11.52 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.26 Total: 0.56 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.26 Total: -49.22 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -2.03 Total: -58.30 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -1.18 Total: -7.45 kcal Total: -65.68 5.44 -60.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349045035.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.520 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds