Wall clock time and date at job start Mon Mar 30 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34791 * 117.00326 * 2 1 4 4 O 1.21508 * 119.99587 * 359.97438 * 3 2 1 5 5 C 1.47355 * 119.99918 * 180.02562 * 3 2 1 6 6 N 1.29946 * 125.21185 * 179.72329 * 5 3 2 7 7 C 1.31787 * 116.08085 * 179.81877 * 6 5 3 8 8 C 1.47422 * 122.56077 * 180.21963 * 7 6 5 9 9 O 1.21626 * 120.00162 * 175.44174 * 8 7 6 10 10 N 1.34779 * 119.99934 * 355.43802 * 8 7 6 11 11 C 1.46497 * 120.00153 * 185.64454 * 10 8 7 12 12 C 1.36932 * 119.99824 * 5.63860 * 10 8 7 13 13 H 1.08003 * 119.99799 * 35.17007 * 12 10 8 14 14 C 1.39005 * 119.99947 * 215.16427 * 12 10 8 15 15 N 1.31393 * 119.99874 * 5.17676 * 14 12 10 16 16 Si 1.86800 * 119.99938 * 185.17163 * 14 12 10 17 17 H 1.48504 * 109.47093 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47116 * 120.00237 * 16 14 12 19 19 H 1.48497 * 109.47049 * 240.00140 * 16 14 12 20 20 C 1.36960 * 114.87573 * 0.46382 * 7 6 5 21 21 S 1.71030 * 108.88724 * 359.75606 * 20 7 6 22 22 H 1.08996 * 109.47133 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47018 * 300.00402 * 1 2 3 24 24 H 1.08998 * 109.46949 * 60.00114 * 1 2 3 25 25 H 1.08997 * 109.47405 * 84.99609 * 11 10 8 26 26 H 1.08998 * 109.47008 * 205.00266 * 11 10 8 27 27 H 1.09003 * 109.46902 * 324.99445 * 11 10 8 28 28 H 0.96999 * 120.00010 * 179.97438 * 15 14 12 29 29 H 1.07999 * 125.55369 * 179.77527 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4022 2.2200 -0.0005 5 6 3.5355 1.2780 -0.0006 6 7 4.2283 2.3774 -0.0058 7 6 5.5386 2.2365 -0.0015 8 6 6.4602 3.3871 -0.0017 9 8 7.6597 3.2056 0.0860 10 7 5.9737 4.6403 -0.0991 11 6 6.8919 5.7749 -0.2239 12 6 4.6211 4.8528 -0.0816 13 1 3.9848 4.2316 0.5313 14 6 4.0670 5.8682 -0.8524 15 7 4.8257 6.5573 -1.6746 16 14 2.2439 6.2528 -0.7196 17 1 1.6164 5.3407 0.2701 18 1 2.0656 7.6595 -0.2782 19 1 1.6005 6.0645 -2.0446 20 6 5.9787 0.9396 -0.0023 21 16 4.6241 -0.1047 -0.0018 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 7.1620 5.9103 -1.2711 26 1 6.4060 6.6779 0.1458 27 1 7.7910 5.5808 0.3611 28 1 4.4390 7.2656 -2.2128 29 1 7.0125 0.6272 -0.0028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350708179.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:03 Heat of formation + Delta-G solvation = -44.364154 kcal Electronic energy + Delta-G solvation = -18498.999743 eV Core-core repulsion = 15322.888487 eV Total energy + Delta-G solvation = -3176.111256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.38817 -39.54257 -37.55178 -36.27213 -34.79202 -31.43419 -30.52445 -28.15427 -27.07935 -25.48596 -24.75007 -22.49924 -20.25014 -19.14550 -18.68023 -17.02714 -16.92222 -16.66825 -16.45021 -15.22222 -14.61690 -14.49118 -14.17812 -13.91029 -13.57677 -13.27539 -12.88810 -12.78336 -12.19849 -11.70798 -11.59982 -11.21207 -11.09709 -10.92760 -10.86068 -10.73754 -10.54152 -10.14878 -9.44556 -9.27053 -8.96976 -8.59851 -8.55153 -7.54951 -6.33107 -3.93643 0.39575 1.40168 1.83386 2.12114 2.39187 3.04079 3.27678 3.33645 3.48437 4.21058 4.35398 4.56641 4.82898 5.01720 5.10514 5.12140 5.26753 5.42066 5.57633 5.82789 6.19649 6.37144 6.77194 6.94304 7.27976 7.61744 7.64096 7.84914 7.98355 8.53819 9.12354 9.44200 9.85027 10.70405 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.009318 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.889786 B = 3004.260251 C = 4646.460776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.356 6.356 3 C 0.545 3.455 4 O -0.461 6.461 5 C -0.025 4.025 6 N -0.320 5.320 7 C 0.054 3.946 8 C 0.506 3.494 9 O -0.610 6.610 10 N -0.409 5.409 11 C 0.118 3.882 12 C -0.313 4.313 13 H 0.125 0.875 14 C 0.041 3.959 15 N -0.871 5.871 16 Si 0.920 3.080 17 H -0.254 1.254 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.214 4.214 21 S 0.193 5.807 22 H 0.104 0.896 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.269 0.731 29 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.320 -12.819 2.549 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.273 6.273 3 C 0.384 3.616 4 O -0.345 6.345 5 C -0.297 4.297 6 N -0.039 5.039 7 C -0.085 4.085 8 C 0.293 3.707 9 O -0.498 6.498 10 N -0.123 5.123 11 C -0.025 4.025 12 C -0.442 4.442 13 H 0.142 0.858 14 C -0.165 4.165 15 N -0.508 5.508 16 Si 0.746 3.254 17 H -0.178 1.178 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.357 4.357 21 S 0.447 5.553 22 H 0.123 0.877 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.484 -12.958 2.452 14.695 hybrid contribution -0.556 1.162 -0.265 1.315 sum -7.040 -11.795 2.188 13.910 Atomic orbital electron populations 1.23316 0.75229 1.03808 1.03037 1.86504 1.23964 1.31742 1.85082 1.19377 0.86064 0.81978 0.74225 1.90948 1.64984 1.35630 1.42895 1.26117 0.95867 0.91781 1.15981 1.67279 1.05428 1.24926 1.06294 1.20907 0.88212 0.94384 1.05022 1.17122 0.85869 0.82077 0.85665 1.90632 1.14482 1.84928 1.59771 1.43547 1.07412 1.03550 1.57804 1.21384 0.91382 0.88826 1.00891 1.20466 0.81410 1.16916 1.25418 0.85755 1.25538 1.00127 0.96597 0.94234 1.69970 1.36291 1.21339 1.23236 0.85918 0.82522 0.77938 0.79044 1.17781 1.20987 1.20785 1.27278 1.05753 0.96291 1.06374 1.83544 0.96279 1.11536 1.63932 0.87739 0.91554 0.91550 0.92576 0.91420 0.94338 0.92126 0.79120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.45 15 2 O -0.36 -4.76 10.42 -40.74 -0.42 -5.19 15 3 C 0.55 9.56 7.96 34.44 0.27 9.83 15 4 O -0.46 -9.58 16.85 -19.27 -0.32 -9.90 15 5 C -0.02 -0.46 7.43 -14.64 -0.11 -0.56 15 6 N -0.32 -7.21 6.79 -7.98 -0.05 -7.27 15 7 C 0.05 1.21 6.54 -84.61 -0.55 0.65 15 8 C 0.51 13.11 7.61 -12.52 -0.10 13.01 15 9 O -0.61 -16.41 16.33 5.25 0.09 -16.32 15 10 N -0.41 -11.04 2.97 -123.42 -0.37 -11.41 15 11 C 0.12 2.97 8.71 59.85 0.52 3.49 15 12 C -0.31 -8.55 7.97 -14.99 -0.12 -8.67 15 13 H 0.13 3.43 5.60 -52.48 -0.29 3.14 15 14 C 0.04 1.10 5.18 -17.45 -0.09 1.01 15 15 N -0.87 -23.98 11.16 55.50 0.62 -23.36 15 16 Si 0.92 21.80 29.56 -169.99 -5.02 16.78 15 17 H -0.25 -6.16 7.11 56.52 0.40 -5.76 15 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 20 C -0.21 -3.74 10.67 30.27 0.32 -3.41 15 21 S 0.19 2.72 23.02 -107.50 -2.47 0.25 15 22 H 0.10 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.06 1.45 7.73 -51.93 -0.40 1.05 15 26 H 0.07 1.69 7.31 -51.93 -0.38 1.31 15 27 H 0.04 0.91 7.50 -51.93 -0.39 0.52 15 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 29 H 0.19 2.97 8.03 -52.49 -0.42 2.55 15 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -32.95 279.93 -4.81 -37.76 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -2.29 Total: -2.35 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 1.22 Total: 16.80 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.20 Total: -42.04 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.66 Total: -31.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.47 Total: 0.25 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.95 -4.81 -37.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350708179.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.603 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds