Wall clock time and date at job start Mon Mar 30 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34791 * 117.00326 * 2 1 4 4 O 1.21508 * 119.99587 * 359.97438 * 3 2 1 5 5 C 1.47355 * 119.99918 * 180.02562 * 3 2 1 6 6 N 1.29946 * 125.21185 * 179.72329 * 5 3 2 7 7 C 1.31787 * 116.08085 * 179.81877 * 6 5 3 8 8 C 1.47422 * 122.56077 * 180.21963 * 7 6 5 9 9 O 1.21626 * 120.00162 * 175.44174 * 8 7 6 10 10 N 1.34779 * 119.99934 * 355.43802 * 8 7 6 11 11 C 1.46497 * 120.00153 * 185.64454 * 10 8 7 12 12 C 1.36932 * 119.99824 * 5.63860 * 10 8 7 13 13 H 1.08003 * 119.99799 * 35.17007 * 12 10 8 14 14 C 1.39005 * 119.99947 * 215.16427 * 12 10 8 15 15 N 1.31393 * 119.99874 * 5.17676 * 14 12 10 16 16 Si 1.86800 * 119.99938 * 185.17163 * 14 12 10 17 17 H 1.48504 * 109.47093 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47116 * 120.00237 * 16 14 12 19 19 H 1.48497 * 109.47049 * 240.00140 * 16 14 12 20 20 C 1.36960 * 114.87573 * 0.46382 * 7 6 5 21 21 S 1.71030 * 108.88724 * 359.75606 * 20 7 6 22 22 H 1.08996 * 109.47133 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47018 * 300.00402 * 1 2 3 24 24 H 1.08998 * 109.46949 * 60.00114 * 1 2 3 25 25 H 1.08997 * 109.47405 * 84.99609 * 11 10 8 26 26 H 1.08998 * 109.47008 * 205.00266 * 11 10 8 27 27 H 1.09003 * 109.46902 * 324.99445 * 11 10 8 28 28 H 0.96999 * 120.00010 * 179.97438 * 15 14 12 29 29 H 1.07999 * 125.55369 * 179.77527 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4022 2.2200 -0.0005 5 6 3.5355 1.2780 -0.0006 6 7 4.2283 2.3774 -0.0058 7 6 5.5386 2.2365 -0.0015 8 6 6.4602 3.3871 -0.0017 9 8 7.6597 3.2056 0.0860 10 7 5.9737 4.6403 -0.0991 11 6 6.8919 5.7749 -0.2239 12 6 4.6211 4.8528 -0.0816 13 1 3.9848 4.2316 0.5313 14 6 4.0670 5.8682 -0.8524 15 7 4.8257 6.5573 -1.6746 16 14 2.2439 6.2528 -0.7196 17 1 1.6164 5.3407 0.2701 18 1 2.0656 7.6595 -0.2782 19 1 1.6005 6.0645 -2.0446 20 6 5.9787 0.9396 -0.0023 21 16 4.6241 -0.1047 -0.0018 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 7.1620 5.9103 -1.2711 26 1 6.4060 6.6779 0.1458 27 1 7.7910 5.5808 0.3611 28 1 4.4390 7.2656 -2.2128 29 1 7.0125 0.6272 -0.0028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350708179.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:03 Heat of formation + Delta-G solvation = -67.312916 kcal Electronic energy + Delta-G solvation = -18499.994876 eV Core-core repulsion = 15322.888487 eV Total energy + Delta-G solvation = -3177.106389 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.75593 -41.09393 -39.34300 -37.53525 -36.81036 -33.46230 -31.98668 -29.24076 -28.89069 -27.12139 -26.46355 -24.10766 -21.77720 -20.69942 -20.33339 -18.77876 -18.37703 -17.95731 -17.64534 -17.03017 -16.38642 -16.29075 -16.04158 -15.31165 -15.16615 -14.69990 -14.44966 -14.21771 -13.58532 -13.36796 -13.18784 -13.07896 -12.92299 -12.70903 -12.56397 -12.16438 -11.93745 -11.89395 -11.15078 -10.86921 -10.80130 -10.38219 -9.99237 -9.54739 -8.34416 -6.01242 -0.97597 0.08301 0.43412 0.57448 1.21941 1.34815 1.39938 1.58010 1.63801 2.29854 2.49000 2.87884 3.14051 3.49916 3.77360 4.18168 4.21234 4.32201 4.35747 4.59085 4.72729 4.85303 4.91333 5.06042 5.22092 5.60967 5.85632 6.29764 6.50066 6.62251 7.10389 7.45489 7.84319 8.70776 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.009318 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.889786 B = 3004.260251 C = 4646.460776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.344 6.344 3 C 0.551 3.449 4 O -0.505 6.505 5 C -0.064 4.064 6 N -0.368 5.368 7 C 0.009 3.991 8 C 0.504 3.496 9 O -0.628 6.628 10 N -0.434 5.434 11 C 0.130 3.870 12 C -0.320 4.320 13 H 0.120 0.880 14 C 0.002 3.998 15 N -0.901 5.901 16 Si 0.976 3.024 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.284 1.284 20 C -0.207 4.207 21 S 0.360 5.640 22 H 0.150 0.850 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.271 0.729 29 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 -16.096 2.824 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.259 6.259 3 C 0.391 3.609 4 O -0.392 6.392 5 C -0.336 4.336 6 N -0.088 5.088 7 C -0.131 4.131 8 C 0.292 3.708 9 O -0.517 6.517 10 N -0.149 5.149 11 C -0.013 4.013 12 C -0.449 4.449 13 H 0.137 0.863 14 C -0.200 4.200 15 N -0.540 5.540 16 Si 0.801 3.199 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.210 1.210 20 C -0.350 4.350 21 S 0.615 5.385 22 H 0.168 0.832 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.446 -16.274 2.733 18.104 hybrid contribution -0.231 1.782 -0.310 1.823 sum -7.676 -14.492 2.423 16.578 Atomic orbital electron populations 1.23764 0.72804 1.06707 1.03010 1.86492 1.26154 1.29151 1.84132 1.19426 0.85840 0.82501 0.73172 1.90920 1.65876 1.37303 1.45054 1.26243 0.97058 0.93625 1.16650 1.67065 1.05788 1.28063 1.07898 1.20431 0.88303 0.94632 1.09690 1.17693 0.86412 0.82891 0.83770 1.90584 1.15473 1.85630 1.60039 1.43739 1.07542 1.04335 1.59271 1.21206 0.91507 0.88712 0.99898 1.20505 0.81660 1.17095 1.25633 0.86319 1.26159 1.03147 0.96613 0.94115 1.70044 1.37405 1.22193 1.24340 0.85096 0.78584 0.77971 0.78292 1.19003 1.19498 1.21039 1.27759 1.08699 0.95889 1.02687 1.82959 0.90834 1.05852 1.58878 0.83239 0.91553 0.91802 0.94143 0.91994 0.93467 0.91982 0.77095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.68 15 2 O -0.34 -8.13 10.42 -57.02 -0.59 -8.73 15 3 C 0.55 18.54 7.96 70.22 0.56 19.10 15 4 O -0.50 -21.01 16.85 19.81 0.33 -20.67 15 5 C -0.06 -2.27 7.43 87.37 0.65 -1.62 15 6 N -0.37 -16.60 6.79 -179.15 -1.22 -17.81 15 7 C 0.01 0.41 6.54 41.27 0.27 0.68 15 8 C 0.50 26.57 7.61 86.66 0.66 27.23 15 9 O -0.63 -34.02 16.33 -4.11 -0.07 -34.09 15 10 N -0.43 -24.16 2.97 -662.65 -1.97 -26.13 15 11 C 0.13 6.78 8.71 127.77 1.11 7.89 15 12 C -0.32 -18.06 7.97 84.08 0.67 -17.39 15 13 H 0.12 6.80 5.60 -2.91 -0.02 6.78 15 14 C 0.00 0.10 5.18 84.94 0.44 0.54 15 15 N -0.90 -51.09 11.16 21.67 0.24 -50.84 15 16 Si 0.98 46.12 29.56 68.60 2.03 48.14 15 17 H -0.27 -12.94 7.11 99.48 0.71 -12.23 15 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 19 H -0.28 -13.38 7.11 99.48 0.71 -12.68 15 20 C -0.21 -6.62 10.67 67.52 0.72 -5.90 15 21 S 0.36 8.49 23.02 -56.49 -1.30 7.19 15 22 H 0.15 1.08 8.14 -2.39 -0.02 1.06 15 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 15 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 15 25 H 0.04 2.18 7.73 -2.39 -0.02 2.17 15 26 H 0.06 3.22 7.31 -2.39 -0.02 3.20 15 27 H 0.05 2.30 7.50 -2.39 -0.02 2.28 15 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 15 29 H 0.21 5.79 8.03 -2.91 -0.02 5.76 15 Total: -1.00 -74.75 279.93 4.94 -69.82 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: 1.20 Total: 0.93 kcal Atomic # 6 Polarization: 25.92 SS G_CDS: 6.28 Total: 32.20 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -2.94 Total: -94.79 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -0.33 Total: -63.49 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 8.49 SS G_CDS: -1.30 Total: 7.19 kcal Total: -74.75 4.94 -69.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350708179.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.506 kcal (2) G-P(sol) polarization free energy of solvation -74.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds