Wall clock time and date at job start Mon Mar 30 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47012 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.47302 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.46788 * 150.00736 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.50706 * 109.47174 * 179.97438 * 14 13 11 16 16 C 1.38227 * 120.40711 * 269.73072 * 15 14 13 17 17 N 1.31849 * 120.82020 * 179.67835 * 16 15 14 18 18 C 1.31871 * 121.74601 * 0.62597 * 17 16 15 19 19 C 1.38417 * 120.73064 * 359.65861 * 18 17 16 20 20 F 1.35100 * 120.44716 * 179.97438 * 19 18 17 21 21 C 1.38591 * 120.40094 * 89.99820 * 15 14 13 22 22 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 24 24 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 25 25 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 26 26 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 27 27 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 28 28 H 1.08000 * 119.59367 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.63166 * 179.68159 * 18 17 16 30 30 H 1.07997 * 120.80071 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 6 3.4849 -8.6838 0.0130 16 6 4.0165 -9.1431 -1.1774 17 7 5.0305 -9.9858 -1.1838 18 6 5.5686 -10.4324 -0.0658 19 6 5.0862 -10.0215 1.1648 20 9 5.6415 -10.4830 2.3066 21 6 4.0229 -9.1292 1.2100 22 1 -0.4851 0.8400 0.0004 23 1 3.1252 -3.7317 0.8875 24 1 3.1238 -3.7309 -0.8925 25 1 3.8010 -6.1834 0.0019 26 1 1.7221 -7.8710 0.9002 27 1 1.7216 -7.8793 -0.8797 28 1 3.5991 -8.8039 -2.1140 29 1 6.3952 -11.1261 -0.1109 30 1 3.6253 -8.7902 2.1552 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471792986.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:12 Heat of formation + Delta-G solvation = -74.373222 kcal Electronic energy + Delta-G solvation = -16821.671113 eV Core-core repulsion = 13656.631356 eV Total energy + Delta-G solvation = -3165.039757 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.04366 -41.39592 -40.40642 -36.35216 -34.57761 -33.64026 -32.31491 -30.79150 -27.77877 -27.18726 -24.84332 -23.28191 -21.83387 -19.90490 -18.59816 -18.43444 -17.95672 -17.70579 -17.15987 -16.87068 -16.82237 -16.51858 -15.81449 -15.05060 -14.86441 -14.59952 -14.42038 -14.35881 -14.24556 -14.01355 -13.40008 -13.15790 -12.99716 -12.87716 -12.60754 -11.73517 -11.27310 -11.13622 -10.82368 -10.73293 -10.26951 -10.18597 -10.02849 -8.65434 -8.34189 -6.11835 -0.27870 -0.06608 1.28389 1.43108 1.48224 1.58393 1.60189 2.20637 2.28443 2.63118 2.88390 3.00155 3.29901 3.33186 3.49767 3.67271 3.78604 3.97092 4.05864 4.27845 4.33978 4.53149 4.66085 4.74167 4.77557 5.00454 5.32137 5.42777 5.50482 6.20435 6.43617 6.69928 7.07485 7.20097 8.74914 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.037733 B = 0.003104 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.871145 B = 9019.181175 C = 9251.230936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.711 5.711 14 C 0.168 3.832 15 C -0.122 4.122 16 C 0.110 3.890 17 N -0.476 5.476 18 C 0.082 3.918 19 C 0.039 3.961 20 F -0.133 7.133 21 C -0.088 4.088 22 H 0.271 0.729 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.415 0.585 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.181 0.819 29 H 0.190 0.810 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.233 -19.770 0.706 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.365 5.365 14 C 0.044 3.956 15 C -0.125 4.125 16 C -0.047 4.047 17 N -0.184 5.184 18 C -0.077 4.077 19 C 0.018 3.982 20 F -0.112 7.112 21 C -0.115 4.115 22 H 0.080 0.920 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.251 0.749 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.198 0.802 29 H 0.206 0.794 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.455 -20.336 -0.051 23.340 hybrid contribution 1.612 1.461 1.111 2.443 sum 13.067 -18.875 1.060 22.981 Atomic orbital electron populations 1.70178 1.07940 1.28607 1.48014 1.26111 0.95953 1.03283 0.93762 0.84964 0.78204 0.76104 0.78782 1.19325 1.20374 1.18229 1.23213 0.95363 0.92094 1.58835 0.89928 1.85550 1.10451 0.99151 1.97053 1.23383 1.03609 0.94355 1.06880 1.19994 0.86133 0.86459 0.75009 1.90710 1.17236 1.85975 1.49937 1.45775 1.10324 1.04499 1.75927 1.20125 0.92908 0.78311 1.04268 1.20624 0.98697 0.99684 0.93488 1.23176 0.91052 0.91774 0.98732 1.67893 1.09912 1.10752 1.29804 1.23366 0.99832 0.98679 0.85799 1.18864 0.96554 0.99244 0.83578 1.91538 1.84194 1.87231 1.48217 1.21847 0.94074 0.94877 1.00694 0.91995 0.87247 0.87113 0.74863 0.90200 0.89478 0.80161 0.79362 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.07 29.55 68.60 2.03 45.09 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.55 -30.76 9.50 67.95 0.65 -30.11 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 9 S -0.15 -8.08 20.57 -56.49 -1.16 -9.24 16 10 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 11 C 0.54 18.23 7.85 87.66 0.69 18.92 16 12 O -0.56 -24.25 15.86 -3.04 -0.05 -24.29 16 13 N -0.71 -15.53 5.55 -466.79 -2.59 -18.12 16 14 C 0.17 3.02 5.82 85.64 0.50 3.52 16 15 C -0.12 -1.74 5.26 -19.78 -0.10 -1.84 16 16 C 0.11 1.57 10.86 84.69 0.92 2.49 16 17 N -0.48 -7.74 10.36 -195.67 -2.03 -9.76 16 18 C 0.08 1.11 11.17 84.73 0.95 2.06 16 19 C 0.04 0.56 7.35 22.47 0.17 0.73 16 20 F -0.13 -2.12 17.28 44.97 0.78 -1.34 16 21 C -0.09 -1.21 9.85 22.51 0.22 -0.99 16 22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.11 3.69 8.14 -2.39 -0.02 3.68 16 24 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 25 H 0.41 6.77 8.46 -92.71 -0.78 5.98 16 26 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 27 H 0.09 1.61 8.09 -2.39 -0.02 1.59 16 28 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 30 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -74.31 294.25 2.54 -71.77 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.39 Total: 9.47 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 4.89 Total: -8.47 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -4.33 Total: -82.98 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Total: -74.31 2.54 -71.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471792986.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.604 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds