Wall clock time and date at job start Mon Mar 30 2020 01:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47344 * 2 1 4 4 C 1.50700 * 109.47344 * 119.99929 * 2 1 3 5 5 H 1.07997 * 120.00255 * 119.99941 * 4 2 1 6 6 C 1.37877 * 119.99844 * 300.00261 * 4 2 1 7 7 N 1.31515 * 120.00046 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00056 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46931 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47296 * 120.00012 * 8 6 4 11 11 H 1.48507 * 109.47111 * 240.00446 * 8 6 4 12 12 N 1.46497 * 109.47553 * 239.99896 * 2 1 3 13 13 C 1.38508 * 120.00084 * 84.99552 * 12 2 1 14 14 C 1.39894 * 120.49894 * 0.23922 * 13 12 2 15 15 C 1.39034 * 118.21644 * 180.27769 * 14 13 12 16 16 C 1.48446 * 120.50277 * 179.76597 * 15 14 13 17 17 N 1.34777 * 120.00140 * 179.72427 * 16 15 14 18 18 O 1.21480 * 119.99423 * 359.72102 * 16 15 14 19 19 N 1.33342 * 119.00090 * 359.48784 * 15 14 13 20 20 C 1.31664 * 120.91880 * 0.25375 * 19 15 14 21 21 Cl 1.73601 * 119.01393 * 179.97438 * 20 19 15 22 22 N 1.31997 * 121.97318 * 0.02562 * 20 19 15 23 23 H 1.09003 * 109.46847 * 60.00085 * 1 2 3 24 24 H 1.08999 * 109.46796 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47141 * 299.99810 * 1 2 3 26 26 H 0.97002 * 120.00119 * 179.97438 * 7 6 4 27 27 H 0.97001 * 120.00328 * 265.00275 * 12 2 1 28 28 H 1.07999 * 120.89475 * 0.04352 * 14 13 12 29 29 H 0.96996 * 119.99887 * 359.97438 * 17 16 15 30 30 H 0.97000 * 119.99555 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.1456 -2.2876 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1660 -1.5867 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1507 0.0003 -2.3892 14 6 1.8256 1.3590 -2.4627 15 6 1.9707 2.0044 -3.6856 16 6 1.6355 3.4440 -3.8222 17 7 1.7853 4.0610 -5.0111 18 8 1.2262 4.0660 -2.8623 19 7 2.4208 1.3121 -4.7326 20 6 2.7211 0.0351 -4.6207 21 17 3.3025 -0.8186 -6.0160 22 7 2.5924 -0.6158 -3.4796 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7088 1.1614 3.4844 27 1 2.2491 -1.6318 -1.1526 28 1 1.4678 1.8913 -1.5938 29 1 2.1124 3.5644 -5.7774 30 1 1.5666 5.0018 -5.1002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472690995.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:35 Heat of formation + Delta-G solvation = -17.089317 kcal Electronic energy + Delta-G solvation = -17959.304755 eV Core-core repulsion = 14814.625270 eV Total energy + Delta-G solvation = -3144.679485 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.29010 -40.30736 -38.42392 -37.73804 -35.52329 -34.69357 -33.96213 -32.24820 -30.32131 -27.43990 -26.52290 -25.20164 -22.83023 -22.02918 -19.96464 -19.44666 -18.37164 -17.82433 -17.18907 -16.81702 -16.70800 -16.64566 -16.07914 -15.65633 -15.40889 -15.03233 -14.48665 -14.24943 -13.42807 -13.01847 -12.83423 -12.76411 -12.52644 -12.44263 -12.23084 -12.20017 -12.00195 -11.76820 -11.14661 -10.95558 -10.77889 -10.60027 -10.57825 -9.14608 -8.23105 -6.39327 -0.65124 -0.05868 0.23976 1.43335 1.46117 1.56487 1.59596 2.02427 2.12377 2.42124 2.63799 3.08623 3.15824 3.50170 3.66277 4.11379 4.29782 4.61446 4.71862 4.88583 4.97034 5.28122 5.39476 5.56909 5.72033 5.75637 5.96716 6.09278 6.29769 6.56336 6.66991 6.92279 7.14223 7.32565 8.82841 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.020605 B = 0.005273 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.568896 B = 5309.178637 C = 6407.967515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.272 3.728 3 H 0.024 0.976 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.024 3.976 7 N -0.910 5.910 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.668 5.668 13 C 0.454 3.546 14 C -0.239 4.239 15 C 0.161 3.839 16 C 0.582 3.418 17 N -0.802 5.802 18 O -0.560 6.560 19 N -0.531 5.531 20 C 0.400 3.600 21 Cl 0.045 6.955 22 N -0.577 5.577 23 H 0.024 0.976 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.268 0.732 27 H 0.409 0.591 28 H 0.147 0.853 29 H 0.424 0.576 30 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 1.118 -15.448 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.588 4.588 5 H 0.087 0.913 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.294 5.294 13 C 0.205 3.795 14 C -0.270 4.270 15 C 0.020 3.980 16 C 0.364 3.636 17 N -0.367 5.367 18 O -0.437 6.437 19 N -0.258 5.258 20 C 0.103 3.897 21 Cl 0.073 6.927 22 N -0.307 5.307 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.246 0.754 28 H 0.164 0.836 29 H 0.256 0.744 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.574 1.094 -15.289 15.542 hybrid contribution 0.081 -0.277 1.224 1.258 sum 2.655 0.817 -14.064 14.336 Atomic orbital electron populations 1.22035 0.97488 1.00032 1.00556 1.18763 0.91500 0.92540 0.80262 0.95794 1.21434 1.32963 1.13817 0.90585 0.91341 1.25634 0.94721 0.95506 1.01866 1.69992 1.36433 1.23432 1.24875 0.85351 0.78117 0.78509 0.78707 1.18970 1.20790 1.20414 1.45397 1.64925 1.13374 1.05743 1.18540 0.86392 0.88196 0.86350 1.22319 1.08920 0.94875 1.00856 1.21112 0.93647 0.94749 0.88528 1.17617 0.77418 0.84495 0.84104 1.43360 1.66852 1.15562 1.10913 1.90872 1.47076 1.65808 1.39945 1.67746 1.19144 1.07343 1.31572 1.22661 0.92278 0.86512 0.88245 1.98417 1.85271 1.74748 1.34271 1.67284 1.23989 1.40652 0.98732 0.95675 0.94277 0.90667 0.92253 0.75418 0.83553 0.74354 0.74568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.50 9.24 71.98 0.67 -5.84 16 2 C 0.27 12.73 2.26 44.25 0.10 12.83 16 3 H 0.02 1.26 6.50 -2.38 -0.02 1.24 16 4 C -0.55 -27.58 8.73 25.60 0.22 -27.36 16 5 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -48.86 11.32 21.45 0.24 -48.62 16 8 Si 0.97 40.67 29.54 68.60 2.03 42.69 16 9 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 12 N -0.67 -26.86 5.22 -327.57 -1.71 -28.57 16 13 C 0.45 17.32 7.69 133.30 1.03 18.34 16 14 C -0.24 -9.10 8.48 22.86 0.19 -8.91 16 15 C 0.16 5.28 6.79 41.83 0.28 5.56 16 16 C 0.58 17.35 8.10 86.96 0.70 18.05 16 17 N -0.80 -14.84 8.87 -175.19 -1.55 -16.40 16 18 O -0.56 -21.08 17.25 -3.65 -0.06 -21.14 16 19 N -0.53 -15.65 9.66 -180.18 -1.74 -17.39 16 20 C 0.40 12.34 8.17 180.86 1.48 13.81 16 21 Cl 0.05 1.07 29.26 -2.72 -0.08 0.99 16 22 N -0.58 -20.20 10.42 -188.34 -1.96 -22.17 16 23 H 0.02 1.05 7.80 -2.39 -0.02 1.03 16 24 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 26 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 27 H 0.41 15.42 8.66 -92.71 -0.80 14.62 16 28 H 0.15 6.20 6.02 -2.91 -0.02 6.19 16 29 H 0.42 6.23 8.21 -92.71 -0.76 5.47 16 30 H 0.42 5.71 8.93 -92.71 -0.83 4.88 16 Total: -1.00 -58.44 284.01 -0.87 -59.30 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -1.15 Total: 23.13 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: 5.12 Total: 28.17 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -6.72 Total: -133.15 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.06 Total: -21.14 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 17 Polarization: 1.07 SS G_CDS: -0.08 Total: 0.99 kcal Total: -58.44 -0.87 -59.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472690995.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.214 kcal (2) G-P(sol) polarization free energy of solvation -58.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds