Wall clock time and date at job start Mon Mar 30 2020 01:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 120.00237 * 2 1 4 4 O 1.21275 * 120.00502 * 185.08106 * 3 2 1 5 5 C 1.50703 * 119.99577 * 5.07536 * 3 2 1 6 6 S 1.81000 * 109.47144 * 180.02562 * 5 3 2 7 7 C 1.76201 * 100.00203 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99766 * 359.97438 * 7 6 5 9 9 C 1.38788 * 120.00034 * 180.02562 * 7 6 5 10 10 N 1.31629 * 120.00152 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00052 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47041 * 90.00133 * 11 9 7 13 13 H 1.48498 * 109.47067 * 210.00122 * 11 9 7 14 14 H 1.48500 * 109.46683 * 329.99894 * 11 9 7 15 15 C 1.39515 * 120.00382 * 179.97438 * 2 1 3 16 16 C 1.39016 * 119.66802 * 265.03723 * 15 2 1 17 17 C 1.38353 * 119.12829 * 180.02562 * 16 15 2 18 18 C 1.39017 * 118.47254 * 359.97438 * 17 16 15 19 19 F 1.35101 * 120.36877 * 180.02562 * 18 17 16 20 20 C 1.38277 * 119.26120 * 359.97438 * 18 17 16 21 21 N 1.31945 * 120.81665 * 0.03070 * 20 18 17 22 22 H 1.08995 * 109.46985 * 269.99856 * 1 2 3 23 23 H 1.08992 * 109.46772 * 30.00127 * 1 2 3 24 24 H 1.09001 * 109.46475 * 149.99935 * 1 2 3 25 25 H 1.08997 * 109.47710 * 300.00491 * 5 3 2 26 26 H 1.09004 * 109.47000 * 60.00146 * 5 3 2 27 27 H 0.97003 * 120.00447 * 180.02562 * 10 9 7 28 28 H 1.08005 * 120.43507 * 359.97438 * 16 15 2 29 29 H 1.08000 * 120.76686 * 179.97438 * 17 16 15 30 30 H 1.08006 * 119.59308 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3481 1.1693 -0.0930 5 6 1.3898 2.4697 0.1155 6 16 2.5648 3.8462 0.0855 7 6 1.4504 5.2031 0.2323 8 1 0.3880 5.0237 0.3064 9 6 1.9378 6.5024 0.2517 10 7 3.2326 6.7211 0.1609 11 14 0.7562 7.9411 0.4068 12 1 0.5514 8.2608 1.8423 13 1 1.3235 9.1246 -0.2880 14 1 -0.5454 7.5812 -0.2110 15 6 2.1627 -1.2082 0.0005 16 6 2.5972 -1.7513 1.2042 17 6 3.2885 -2.9496 1.1917 18 6 3.5222 -3.5673 -0.0316 19 9 4.1928 -4.7387 -0.0883 20 6 3.0595 -2.9698 -1.1897 21 7 2.4032 -1.8261 -1.1445 22 1 -0.3633 0.0000 1.0276 23 1 -0.3632 0.8899 -0.5138 24 1 -0.3632 -0.8900 -0.5139 25 1 0.6969 2.5658 -0.7204 26 1 0.8333 2.4870 1.0526 27 1 3.5733 7.6292 0.1749 28 1 2.3985 -1.2439 2.1367 29 1 3.6387 -3.3951 2.1111 30 1 3.2377 -3.4452 -2.1430 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544819578.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:57 Heat of formation + Delta-G solvation = -29.125402 kcal Electronic energy + Delta-G solvation = -17383.712373 eV Core-core repulsion = 14220.634708 eV Total energy + Delta-G solvation = -3163.077664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.23380 -40.83545 -38.91232 -35.46202 -32.79694 -32.45916 -31.01320 -28.79639 -26.79458 -25.53466 -24.20968 -23.46774 -20.14309 -17.96610 -17.77982 -17.65347 -17.37061 -16.43260 -15.95613 -15.28721 -15.01697 -14.82820 -14.24705 -14.11965 -13.79911 -13.54057 -13.20024 -13.11627 -12.85188 -12.58608 -12.42866 -12.03998 -11.08730 -11.05477 -10.79959 -10.23521 -10.11379 -9.86090 -9.63110 -9.13911 -9.09404 -8.87634 -8.28205 -6.54959 -6.24450 -3.96123 0.56575 0.82673 2.56657 2.84829 3.20367 3.21285 3.28174 3.29003 3.47312 3.76983 4.16865 4.26889 4.43258 4.59492 4.71302 4.93542 5.07960 5.10979 5.29881 5.32033 5.51852 5.56096 5.56849 5.61054 5.81709 6.05518 6.08179 6.70190 7.22844 7.56777 7.57075 8.32126 8.36514 9.20780 10.82963 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.050421 B = 0.003660 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.194613 B = 7648.935599 C = 7902.476791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.580 5.580 3 C 0.542 3.458 4 O -0.500 6.500 5 C -0.147 4.147 6 S -0.060 6.060 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.920 3.080 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.352 3.648 16 C -0.124 4.124 17 C -0.100 4.100 18 C 0.044 3.956 19 F -0.130 7.130 20 C 0.090 3.910 21 N -0.457 5.457 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.269 0.731 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -19.388 1.840 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.316 5.316 3 C 0.330 3.670 4 O -0.371 6.371 5 C -0.297 4.297 6 S 0.167 5.833 7 C -0.684 4.684 8 H 0.092 0.908 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.746 3.254 12 H -0.202 1.202 13 H -0.207 1.207 14 H -0.196 1.196 15 C 0.126 3.874 16 C -0.146 4.146 17 C -0.127 4.127 18 C 0.022 3.978 19 F -0.108 7.108 20 C -0.070 4.070 21 N -0.167 5.167 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.917 -18.858 0.908 19.281 hybrid contribution -1.746 0.318 0.912 1.995 sum -5.663 -18.540 1.819 19.470 Atomic orbital electron populations 1.21871 0.77456 1.03944 1.02334 1.45368 1.07216 1.02555 1.76441 1.20560 0.87909 0.83866 0.74642 1.90734 1.14072 1.86279 1.46023 1.23555 1.04690 0.96313 1.05176 1.85467 1.08322 0.93423 1.96077 1.22846 0.94698 0.92226 1.58632 0.90796 1.24994 0.95680 0.98379 0.94486 1.70015 1.11926 1.21732 1.46555 0.86154 0.80266 0.80613 0.78388 1.20248 1.20747 1.19640 1.18172 0.93450 0.87675 0.88109 1.22079 0.97713 0.95138 0.99659 1.21574 0.98077 0.95295 0.97749 1.18803 0.98297 0.84806 0.95845 1.91526 1.77740 1.44385 1.97188 1.22702 0.95137 0.91342 0.97781 1.67402 1.12125 1.07494 1.29645 0.91881 0.89752 0.91056 0.88719 0.88688 0.92129 0.83336 0.83001 0.81217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.19 59.85 0.61 1.51 16 2 N -0.58 -8.65 2.98 -122.75 -0.37 -9.01 16 3 C 0.54 10.41 7.65 -10.98 -0.08 10.33 16 4 O -0.50 -11.69 15.84 5.56 0.09 -11.60 16 5 C -0.15 -2.90 4.83 36.01 0.17 -2.73 16 6 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 7 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 10 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 11 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 C 0.35 5.06 5.45 -154.63 -0.84 4.22 16 16 C -0.12 -1.45 10.02 -39.25 -0.39 -1.84 16 17 C -0.10 -0.99 10.15 -39.25 -0.40 -1.38 16 18 C 0.04 0.47 7.34 -39.28 -0.29 0.18 16 19 F -0.13 -1.32 17.28 2.25 0.04 -1.29 16 20 C 0.09 1.03 11.16 -17.49 -0.20 0.84 16 21 N -0.46 -6.60 10.39 -12.30 -0.13 -6.72 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.08 0.85 6.48 -51.93 -0.34 0.52 16 24 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 25 H 0.09 1.72 7.25 -51.92 -0.38 1.34 16 26 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.17 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 291.29 15.07 4.39 4.39 Total: -1.00 -34.85 291.29 -6.49 -41.34 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -2.79 Total: -2.60 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.22 Total: -1.59 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.24 Total: -40.91 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.85 -6.49 -41.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544819578.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.216 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds