Wall clock time and date at job start Mon Mar 30 2020 01:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 120.00237 * 2 1 4 4 O 1.21275 * 120.00502 * 185.08106 * 3 2 1 5 5 C 1.50703 * 119.99577 * 5.07536 * 3 2 1 6 6 S 1.81000 * 109.47144 * 180.02562 * 5 3 2 7 7 C 1.76201 * 100.00203 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99766 * 359.97438 * 7 6 5 9 9 C 1.38788 * 120.00034 * 180.02562 * 7 6 5 10 10 N 1.31629 * 120.00152 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00052 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47041 * 90.00133 * 11 9 7 13 13 H 1.48498 * 109.47067 * 210.00122 * 11 9 7 14 14 H 1.48500 * 109.46683 * 329.99894 * 11 9 7 15 15 C 1.39515 * 120.00382 * 179.97438 * 2 1 3 16 16 C 1.39016 * 119.66802 * 265.03723 * 15 2 1 17 17 C 1.38353 * 119.12829 * 180.02562 * 16 15 2 18 18 C 1.39017 * 118.47254 * 359.97438 * 17 16 15 19 19 F 1.35101 * 120.36877 * 180.02562 * 18 17 16 20 20 C 1.38277 * 119.26120 * 359.97438 * 18 17 16 21 21 N 1.31945 * 120.81665 * 0.03070 * 20 18 17 22 22 H 1.08995 * 109.46985 * 269.99856 * 1 2 3 23 23 H 1.08992 * 109.46772 * 30.00127 * 1 2 3 24 24 H 1.09001 * 109.46475 * 149.99935 * 1 2 3 25 25 H 1.08997 * 109.47710 * 300.00491 * 5 3 2 26 26 H 1.09004 * 109.47000 * 60.00146 * 5 3 2 27 27 H 0.97003 * 120.00447 * 180.02562 * 10 9 7 28 28 H 1.08005 * 120.43507 * 359.97438 * 16 15 2 29 29 H 1.08000 * 120.76686 * 179.97438 * 17 16 15 30 30 H 1.08006 * 119.59308 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3481 1.1693 -0.0930 5 6 1.3898 2.4697 0.1155 6 16 2.5648 3.8462 0.0855 7 6 1.4504 5.2031 0.2323 8 1 0.3880 5.0237 0.3064 9 6 1.9378 6.5024 0.2517 10 7 3.2326 6.7211 0.1609 11 14 0.7562 7.9411 0.4068 12 1 0.5514 8.2608 1.8423 13 1 1.3235 9.1246 -0.2880 14 1 -0.5454 7.5812 -0.2110 15 6 2.1627 -1.2082 0.0005 16 6 2.5972 -1.7513 1.2042 17 6 3.2885 -2.9496 1.1917 18 6 3.5222 -3.5673 -0.0316 19 9 4.1928 -4.7387 -0.0883 20 6 3.0595 -2.9698 -1.1897 21 7 2.4032 -1.8261 -1.1445 22 1 -0.3633 0.0000 1.0276 23 1 -0.3632 0.8899 -0.5138 24 1 -0.3632 -0.8900 -0.5139 25 1 0.6969 2.5658 -0.7204 26 1 0.8333 2.4870 1.0526 27 1 3.5733 7.6292 0.1749 28 1 2.3985 -1.2439 2.1367 29 1 3.6387 -3.3951 2.1111 30 1 3.2377 -3.4452 -2.1430 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544819578.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:57 Heat of formation + Delta-G solvation = -52.284110 kcal Electronic energy + Delta-G solvation = -17384.716609 eV Core-core repulsion = 14220.634708 eV Total energy + Delta-G solvation = -3164.081901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.06620 -41.91555 -40.16876 -36.72711 -34.57517 -33.68394 -32.17256 -30.12437 -27.79035 -27.64545 -25.09276 -24.53564 -21.39077 -19.72211 -18.86361 -18.59864 -18.55822 -17.74404 -16.86933 -16.82846 -16.59768 -16.29993 -15.66115 -15.07494 -14.93651 -14.69587 -14.42993 -14.25093 -14.15128 -13.71112 -13.62298 -13.26965 -13.14673 -12.87716 -12.61131 -11.74555 -11.23559 -11.12967 -11.09713 -11.00321 -10.28016 -10.11934 -9.94313 -8.67976 -8.33638 -6.12591 -0.35731 -0.02357 1.17049 1.37277 1.43682 1.44633 1.56309 1.85672 2.27599 2.38058 2.91547 3.01047 3.20513 3.39191 3.64364 3.72234 3.76508 3.91028 4.17668 4.28332 4.45377 4.49779 4.60302 4.70530 4.78072 4.84643 5.21283 5.43555 5.65845 5.98377 6.21248 6.61774 6.98054 7.07855 8.75609 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.050421 B = 0.003660 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.194613 B = 7648.935599 C = 7902.476791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.568 5.568 3 C 0.543 3.457 4 O -0.554 6.554 5 C -0.119 4.119 6 S -0.153 6.153 7 C -0.544 4.544 8 H 0.087 0.913 9 C 0.013 3.987 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.256 1.256 15 C 0.319 3.681 16 C -0.127 4.127 17 C -0.089 4.089 18 C 0.048 3.952 19 F -0.125 7.125 20 C 0.085 3.915 21 N -0.488 5.488 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.271 0.729 28 H 0.163 0.837 29 H 0.186 0.814 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 -20.480 2.619 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.302 5.302 3 C 0.331 3.669 4 O -0.429 6.429 5 C -0.270 4.270 6 S 0.074 5.926 7 C -0.692 4.692 8 H 0.105 0.895 9 C -0.191 4.191 10 N -0.549 5.549 11 Si 0.821 3.179 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.180 1.180 15 C 0.095 3.905 16 C -0.148 4.148 17 C -0.116 4.116 18 C 0.027 3.973 19 F -0.104 7.104 20 C -0.075 4.075 21 N -0.198 5.198 22 H 0.109 0.891 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.132 0.868 26 H 0.139 0.861 27 H 0.080 0.920 28 H 0.180 0.820 29 H 0.203 0.797 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.988 -20.000 1.691 20.945 hybrid contribution -1.126 0.429 0.655 1.372 sum -7.114 -19.571 2.346 20.956 Atomic orbital electron populations 1.22212 0.74784 1.04928 1.04465 1.45247 1.08781 1.01703 1.74420 1.20388 0.87204 0.84843 0.74427 1.90709 1.16162 1.87117 1.48957 1.23358 1.02737 0.93657 1.07267 1.85672 1.13011 0.97470 1.96428 1.23199 0.95113 0.92542 1.58301 0.89508 1.26133 0.97524 1.01691 0.93786 1.70187 1.14328 1.22464 1.47916 0.84939 0.77996 0.76189 0.78767 1.19226 1.20572 1.18019 1.18438 0.95106 0.87793 0.89212 1.22220 0.97569 0.95797 0.99258 1.21917 0.96545 0.94295 0.98821 1.18832 0.97768 0.84757 0.95957 1.91544 1.77561 1.44089 1.97182 1.23076 0.94481 0.90670 0.99271 1.67327 1.13520 1.08857 1.30145 0.89132 0.89398 0.89498 0.86810 0.86123 0.92026 0.81961 0.79686 0.79007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 10.19 127.77 1.30 2.71 16 2 N -0.57 -16.27 2.98 -660.66 -1.97 -18.23 16 3 C 0.54 20.78 7.65 87.66 0.67 21.45 16 4 O -0.55 -26.62 15.84 -3.02 -0.05 -26.66 16 5 C -0.12 -4.63 4.83 71.24 0.34 -4.29 16 6 S -0.15 -8.41 20.57 -56.49 -1.16 -9.58 16 7 C -0.54 -30.43 9.50 67.95 0.65 -29.78 16 8 H 0.09 4.45 7.80 -2.91 -0.02 4.42 16 9 C 0.01 0.75 5.49 84.85 0.47 1.22 16 10 N -0.91 -55.69 13.22 21.65 0.29 -55.41 16 11 Si 1.00 42.86 29.55 68.60 2.03 44.88 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 15 C 0.32 8.86 5.45 132.88 0.72 9.59 16 16 C -0.13 -2.74 10.02 22.48 0.23 -2.51 16 17 C -0.09 -1.54 10.15 22.48 0.23 -1.31 16 18 C 0.05 0.92 7.34 22.47 0.16 1.09 16 19 F -0.13 -2.26 17.28 44.97 0.78 -1.49 16 20 C 0.08 1.83 11.16 84.68 0.95 2.77 16 21 N -0.49 -13.75 10.39 -192.82 -2.00 -15.75 16 22 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.09 1.56 6.48 -2.39 -0.02 1.54 16 24 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 25 H 0.11 3.97 7.25 -2.40 -0.02 3.95 16 26 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 27 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -78.19 291.29 4.79 -73.40 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.17 Total: 7.90 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.72 Total: 0.93 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -3.68 Total: -89.39 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.49 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.58 kcal Total: -78.19 4.79 -73.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544819578.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.113 kcal (2) G-P(sol) polarization free energy of solvation -78.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds