Wall clock time and date at job start Mon Mar 30 2020 00:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42095 * 110.54260 * 2 1 4 4 O 1.42102 * 110.54177 * 223.24965 * 2 1 3 5 5 C 1.76201 * 104.44914 * 111.62570 * 2 1 3 6 6 C 1.38366 * 119.45050 * 89.99896 * 5 2 1 7 7 C 1.38344 * 119.30856 * 180.02562 * 6 5 2 8 8 C 1.40088 * 118.28275 * 0.25653 * 7 6 5 9 9 C 1.47715 * 120.56703 * 179.74889 * 8 7 6 10 10 O 1.21589 * 119.99826 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99964 * 179.97438 * 9 8 7 12 12 C 1.36876 * 119.99787 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00172 * 0.02562 * 12 11 9 14 14 C 1.39055 * 119.99801 * 179.97438 * 12 11 9 15 15 N 1.31360 * 120.00198 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99593 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47321 * 90.00329 * 16 14 12 18 18 H 1.48500 * 109.46798 * 209.99854 * 16 14 12 19 19 H 1.48504 * 109.47305 * 329.99450 * 16 14 12 20 20 C 1.39597 * 118.86609 * 359.49898 * 8 7 6 21 21 N 1.31683 * 120.55863 * 0.51167 * 20 8 7 22 22 H 1.08996 * 109.47273 * 308.37386 * 1 2 3 23 23 H 1.09000 * 109.47050 * 68.37729 * 1 2 3 24 24 H 1.09006 * 109.47037 * 188.37496 * 1 2 3 25 25 H 1.07998 * 120.35371 * 0.04449 * 6 5 2 26 26 H 1.08002 * 120.85636 * 179.97438 * 7 6 5 27 27 H 0.96997 * 120.00378 * 0.02562 * 11 9 8 28 28 H 0.96998 * 120.00016 * 180.02562 * 15 14 12 29 29 H 1.08009 * 119.72254 * 180.22309 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4234 -1.9917 1.7546 7 6 2.7681 -2.4823 3.0013 8 6 2.9271 -1.5703 4.0527 9 6 3.2891 -2.0395 5.4058 10 8 3.4513 -3.2263 5.6146 11 7 3.4397 -1.1520 6.4089 12 6 3.7747 -1.5869 7.6628 13 1 3.9187 -2.6410 7.8483 14 6 3.9306 -0.6712 8.6976 15 7 3.7559 0.6110 8.4720 16 14 4.3884 -1.2646 10.4087 17 1 5.8670 -1.2930 10.5437 18 1 3.8165 -0.3420 11.4220 19 1 3.8455 -2.6305 10.6207 20 6 2.7428 -0.2101 3.7987 21 7 2.4150 0.2075 2.5936 22 1 -0.3633 0.6379 0.8056 23 1 -0.3633 0.3787 -0.9553 24 1 -0.3633 -1.0168 0.1497 25 1 2.2886 -2.6655 0.9214 26 1 2.9065 -3.5414 3.1610 27 1 3.3100 -0.2053 6.2425 28 1 3.8650 1.2498 9.1938 29 1 2.8655 0.5055 4.5984 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546236654.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:39 Heat of formation + Delta-G solvation = -67.082759 kcal Electronic energy + Delta-G solvation = -17757.661252 eV Core-core repulsion = 14580.564843 eV Total energy + Delta-G solvation = -3177.096408 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10028 -38.00076 -37.13037 -35.96865 -34.44327 -32.26854 -32.08545 -31.03961 -29.67289 -25.99315 -24.04118 -23.43028 -20.16718 -19.21354 -18.54911 -17.87865 -16.92397 -16.36266 -16.25656 -15.47804 -14.97968 -14.71990 -14.26981 -14.06813 -13.84465 -13.43235 -13.36249 -13.18403 -12.82891 -12.59069 -12.12633 -12.01065 -11.89449 -11.36389 -11.31590 -11.03054 -10.67130 -10.55316 -9.95916 -9.72191 -9.62372 -9.23151 -8.70588 -8.39960 -6.89020 -4.14074 -0.06841 0.51185 1.36211 2.72020 2.94590 3.06245 3.11294 3.24945 3.82411 3.84119 3.97332 4.19256 4.47983 4.54674 4.59280 4.87479 4.98773 5.08453 5.17543 5.31661 5.44527 5.63297 5.67952 6.06885 6.38236 6.63701 7.11700 7.63300 7.74568 8.16349 8.73627 9.05930 9.65727 10.25709 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.043254 B = 0.004100 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.187317 B = 6828.102725 C = 7260.779542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.514 3.486 3 O -0.921 6.921 4 O -0.938 6.938 5 C -0.454 4.454 6 C -0.091 4.091 7 C -0.061 4.061 8 C -0.085 4.085 9 C 0.446 3.554 10 O -0.595 6.595 11 N -0.524 5.524 12 C -0.284 4.284 13 H 0.115 0.885 14 C 0.025 3.975 15 N -0.869 5.869 16 Si 0.942 3.058 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.264 1.264 20 C 0.086 3.914 21 N -0.392 5.392 22 H 0.135 0.865 23 H 0.132 0.868 24 H 0.131 0.869 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.396 0.604 28 H 0.283 0.717 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.027 0.298 -11.696 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.690 3.310 3 O -0.918 6.918 4 O -0.935 6.935 5 C -0.674 4.674 6 C -0.112 4.112 7 C -0.089 4.089 8 C -0.092 4.092 9 C 0.235 3.765 10 O -0.483 6.483 11 N -0.156 5.156 12 C -0.414 4.414 13 H 0.133 0.867 14 C -0.182 4.182 15 N -0.506 5.506 16 Si 0.767 3.233 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.078 4.078 21 N -0.101 5.101 22 H 0.153 0.847 23 H 0.150 0.850 24 H 0.149 0.851 25 H 0.170 0.830 26 H 0.169 0.831 27 H 0.231 0.769 28 H 0.093 0.907 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.451 0.851 -12.156 13.787 hybrid contribution -0.159 -0.801 1.729 1.912 sum -6.610 0.050 -10.427 12.346 Atomic orbital electron populations 1.30195 1.25617 1.12092 1.11915 1.05073 0.77932 0.74627 0.73326 1.93585 1.76879 1.35947 1.85357 1.93592 1.77727 1.62312 1.59821 1.32873 1.15614 0.99400 1.19533 1.21841 0.95979 0.94830 0.98550 1.21722 0.94953 1.01246 0.90958 1.21680 0.96129 0.94807 0.96594 1.17422 0.88521 0.86846 0.83702 1.90629 1.58911 1.15772 1.82989 1.42067 1.55722 1.09365 1.08481 1.20049 1.41486 0.95933 0.83942 0.86737 1.25570 0.96423 0.94825 1.01342 1.69580 1.44444 1.01386 1.35200 0.85659 0.79083 0.79069 0.79507 1.19746 1.20350 1.18836 1.23260 0.96408 0.93842 0.94301 1.67628 1.06861 1.36637 0.98957 0.84657 0.84968 0.85052 0.83047 0.83056 0.76903 0.90667 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.34 10.80 101.05 1.09 -3.25 15 2 S 2.51 29.08 5.86 -107.50 -0.63 28.45 15 3 O -0.92 -14.15 17.72 -57.54 -1.02 -15.17 15 4 O -0.94 -12.55 17.09 -57.54 -0.98 -13.54 15 5 C -0.45 -6.69 6.53 -17.46 -0.11 -6.81 15 6 C -0.09 -1.28 9.49 -39.50 -0.37 -1.66 15 7 C -0.06 -1.02 9.72 -38.85 -0.38 -1.40 15 8 C -0.09 -1.65 5.89 -104.82 -0.62 -2.27 15 9 C 0.45 10.43 7.73 -12.39 -0.10 10.34 15 10 O -0.60 -15.75 15.99 5.29 0.08 -15.66 15 11 N -0.52 -12.58 5.23 -11.87 -0.06 -12.64 15 12 C -0.28 -7.31 9.68 -15.00 -0.15 -7.45 15 13 H 0.11 3.06 7.15 -52.49 -0.38 2.69 15 14 C 0.02 0.60 5.50 -17.45 -0.10 0.51 15 15 N -0.87 -21.42 13.05 55.50 0.72 -20.70 15 16 Si 0.94 19.03 29.55 -169.99 -5.02 14.01 15 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 18 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 19 H -0.26 -5.34 7.11 56.52 0.40 -4.93 15 20 C 0.09 1.54 10.72 -17.11 -0.18 1.36 15 21 N -0.39 -6.68 10.02 -12.09 -0.12 -6.80 15 22 H 0.13 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.13 0.59 8.14 -51.92 -0.42 0.16 15 24 H 0.13 0.65 8.14 -51.92 -0.42 0.23 15 25 H 0.15 1.63 7.55 -52.49 -0.40 1.23 15 26 H 0.15 2.41 7.74 -52.49 -0.41 2.01 15 27 H 0.40 8.90 5.96 -40.82 -0.24 8.65 15 28 H 0.28 6.52 8.31 -40.82 -0.34 6.18 15 29 H 0.17 2.81 6.42 -52.48 -0.34 2.47 15 LS Contribution 279.44 15.07 4.21 4.21 Total: -1.00 -33.60 279.44 -5.89 -39.50 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.16 Total: 8.97 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.91 Total: -10.63 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.54 Total: -40.13 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.92 Total: -44.37 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Atomic # 16 Polarization: 29.08 SS G_CDS: -0.63 Total: 28.45 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.60 -5.89 -39.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236654.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.585 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds