Wall clock time and date at job start Mon Mar 30 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47133 * 2 1 4 4 C 1.50706 * 109.47045 * 239.99950 * 2 1 3 5 5 H 1.07996 * 119.99639 * 245.46035 * 4 2 1 6 6 C 1.37868 * 120.00072 * 65.46686 * 4 2 1 7 7 N 1.31521 * 120.00012 * 9.64838 * 6 4 2 8 8 Si 1.86804 * 119.99947 * 189.64818 * 6 4 2 9 9 H 1.48503 * 109.46896 * 84.99544 * 8 6 4 10 10 H 1.48503 * 109.47240 * 204.98824 * 8 6 4 11 11 H 1.48492 * 109.47208 * 324.99467 * 8 6 4 12 12 C 1.50696 * 109.47539 * 119.99798 * 2 1 3 13 13 O 1.21262 * 120.00331 * 119.99803 * 12 2 1 14 14 N 1.34782 * 120.00100 * 300.00397 * 12 2 1 15 15 C 1.38365 * 120.00478 * 179.97438 * 14 12 2 16 16 N 1.30153 * 124.73620 * 359.97279 * 15 14 12 17 17 C 1.30806 * 117.31331 * 179.97438 * 16 15 14 18 18 C 1.36841 * 113.99850 * 0.02562 * 17 16 15 19 19 C 1.46140 * 126.12552 * 179.97438 * 18 17 16 20 20 O 1.21668 * 119.99895 * 359.97438 * 19 18 17 21 21 O 1.34929 * 119.99915 * 179.97438 * 19 18 17 22 22 S 1.70920 * 124.74250 * 179.97438 * 15 14 12 23 23 H 1.09001 * 109.47213 * 63.69756 * 1 2 3 24 24 H 1.09004 * 109.47066 * 183.69683 * 1 2 3 25 25 H 1.09000 * 109.47381 * 303.69569 * 1 2 3 26 26 H 0.97002 * 119.99580 * 180.02562 * 7 6 4 27 27 H 0.97004 * 119.99785 * 359.97438 * 14 12 2 28 28 H 1.07997 * 123.00195 * 179.72560 * 17 16 15 29 29 H 0.96702 * 113.99772 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7947 -0.1774 -2.4796 7 7 1.3011 1.0364 -2.5935 8 14 2.1737 -1.1791 -4.0101 9 1 1.0201 -2.0603 -4.3231 10 1 2.4211 -0.2631 -5.1525 11 1 3.3810 -2.0101 -3.7714 12 6 2.0324 -0.7103 1.2304 13 8 2.7296 -1.6963 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1676 -0.9023 3.5844 16 7 2.9183 -1.9655 3.5725 17 6 3.2711 -2.4641 4.7291 18 6 2.7835 -1.7734 5.8051 19 6 3.0118 -2.0966 7.2119 20 8 3.6916 -3.0599 7.5121 21 8 2.4689 -1.3266 8.1777 22 16 1.8306 -0.4248 5.1905 23 1 -0.3634 0.4554 -0.9213 24 1 -0.3633 -1.0256 0.0663 25 1 -0.3634 0.5701 0.8550 26 1 1.1336 1.4112 -3.4724 27 1 1.1493 0.5390 2.5436 28 1 3.8880 -3.3452 4.8263 29 1 2.6756 -1.6186 9.0761 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210951.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:43 Heat of formation + Delta-G solvation = -101.054024 kcal Electronic energy + Delta-G solvation = -17593.882651 eV Core-core repulsion = 14415.313138 eV Total energy + Delta-G solvation = -3178.569513 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.75900 -41.11349 -39.88074 -37.10347 -36.06703 -35.80752 -32.74899 -31.12144 -27.38349 -27.09421 -25.13828 -24.01676 -22.24547 -20.70798 -19.95056 -19.13251 -18.31847 -17.99875 -17.46781 -17.00595 -16.81537 -16.48143 -16.45922 -15.46428 -15.25206 -14.97448 -14.48075 -14.38518 -13.65932 -12.99934 -12.85504 -12.72077 -12.69871 -12.59944 -12.35217 -12.04975 -12.00134 -11.98777 -11.17747 -11.12811 -10.58763 -10.53030 -10.26173 -9.40252 -8.22319 -6.27224 -0.98208 -0.29271 0.37288 1.08969 1.41024 1.42670 1.52458 1.73064 1.83032 2.03848 2.11951 2.43708 3.11339 3.25542 3.94631 4.14802 4.47181 4.69071 4.70753 4.85106 4.93240 5.10118 5.39947 5.42190 5.69632 5.77044 5.94473 6.20695 6.68492 6.80609 6.82330 7.19674 7.40754 8.86784 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.049990 B = 0.003963 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.976400 B = 7064.379830 C = 7520.111727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.032 3.968 3 H 0.060 0.940 4 C -0.533 4.533 5 H 0.048 0.952 6 C 0.027 3.973 7 N -0.907 5.907 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.282 1.282 12 C 0.517 3.483 13 O -0.509 6.509 14 N -0.623 5.623 15 C 0.271 3.729 16 N -0.538 5.538 17 C 0.171 3.829 18 C -0.350 4.350 19 C 0.578 3.422 20 O -0.538 6.538 21 O -0.494 6.494 22 S 0.293 5.707 23 H 0.058 0.942 24 H 0.031 0.969 25 H 0.066 0.934 26 H 0.267 0.733 27 H 0.441 0.559 28 H 0.197 0.803 29 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 1.882 19.330 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.011 3.989 3 H 0.077 0.923 4 C -0.572 4.572 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.207 1.207 12 C 0.304 3.696 13 O -0.379 6.379 14 N -0.276 5.276 15 C -0.092 4.092 16 N -0.260 5.260 17 C 0.008 3.992 18 C -0.475 4.475 19 C 0.422 3.578 20 O -0.430 6.430 21 O -0.307 6.307 22 S 0.547 5.453 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.283 0.717 28 H 0.213 0.787 29 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -3.027 1.926 18.581 18.924 hybrid contribution 0.825 -1.193 -0.513 1.538 sum -2.202 0.733 18.068 18.216 Atomic orbital electron populations 1.21589 0.94355 0.99841 1.02016 1.18882 0.95567 0.96645 0.87832 0.92267 1.21188 1.36465 1.08474 0.91056 0.93364 1.25491 0.95011 0.95569 1.01230 1.69991 1.45271 1.14381 1.24855 0.85701 0.78514 0.78886 0.79347 1.19753 1.20143 1.20715 1.22277 0.78655 0.84310 0.84383 1.90661 1.35231 1.26111 1.85873 1.43596 1.50898 1.30754 1.02339 1.24716 0.95853 0.93774 0.94865 1.66504 1.17722 1.12384 1.29363 1.22553 0.94851 0.98576 0.83195 1.24747 1.18617 1.08130 0.95990 1.18700 0.75263 0.79145 0.84651 1.90969 1.39041 1.29377 1.83645 1.84976 1.70063 1.54484 1.21146 1.83482 1.45648 1.24362 0.91773 0.92313 0.94945 0.91558 0.92420 0.71748 0.78654 0.70310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 8.94 71.98 0.64 -4.15 15 2 C 0.03 1.50 2.50 -12.29 -0.03 1.47 15 3 H 0.06 2.81 8.09 -2.38 -0.02 2.79 15 4 C -0.53 -29.48 8.28 25.60 0.21 -29.27 15 5 H 0.05 2.89 6.79 -2.91 -0.02 2.87 15 6 C 0.03 1.47 5.17 84.65 0.44 1.91 15 7 N -0.91 -48.81 12.17 21.45 0.26 -48.55 15 8 Si 0.95 43.74 29.55 68.60 2.03 45.76 15 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 11 H -0.28 -13.32 7.11 99.48 0.71 -12.62 15 12 C 0.52 22.27 7.11 87.65 0.62 22.90 15 13 O -0.51 -26.51 14.07 -2.97 -0.04 -26.55 15 14 N -0.62 -19.49 5.28 -313.87 -1.66 -21.15 15 15 C 0.27 8.23 7.98 179.27 1.43 9.66 15 16 N -0.54 -19.31 8.55 -200.22 -1.71 -21.02 15 17 C 0.17 4.96 11.15 84.52 0.94 5.90 15 18 C -0.35 -8.41 6.51 23.99 0.16 -8.25 15 19 C 0.58 12.38 8.26 69.87 0.58 12.96 15 20 O -0.54 -14.41 17.60 19.29 0.34 -14.07 15 21 O -0.49 -6.68 13.44 -58.45 -0.79 -7.47 15 22 S 0.29 5.87 23.07 -56.49 -1.30 4.56 15 23 H 0.06 2.63 6.83 -2.39 -0.02 2.61 15 24 H 0.03 1.29 8.14 -2.38 -0.02 1.27 15 25 H 0.07 1.97 7.67 -2.39 -0.02 1.95 15 26 H 0.27 13.65 8.31 -92.71 -0.77 12.88 15 27 H 0.44 9.77 8.31 -92.71 -0.77 9.00 15 28 H 0.20 5.14 8.06 -2.91 -0.02 5.11 15 29 H 0.44 1.72 8.98 -74.06 -0.67 1.06 15 Total: -1.00 -73.28 282.13 1.92 -71.36 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -0.20 Total: 4.00 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 4.99 Total: 13.12 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -3.11 Total: -90.72 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -0.49 Total: -48.09 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -1.30 Total: 4.56 kcal Total: -73.28 1.92 -71.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210951.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.694 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds