Wall clock time and date at job start Mon Mar 30 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 O 1.21272 * 120.00210 * 240.00056 * 12 2 1 14 14 N 1.34780 * 120.00249 * 59.99816 * 12 2 1 15 15 C 1.38366 * 120.00364 * 179.97438 * 14 12 2 16 16 N 1.30160 * 124.73507 * 359.69845 * 15 14 12 17 17 C 1.30808 * 117.30627 * 179.83531 * 16 15 14 18 18 C 1.36837 * 114.00116 * 0.44889 * 17 16 15 19 19 C 1.46138 * 126.12121 * 179.78861 * 18 17 16 20 20 O 1.21665 * 120.00347 * 359.97438 * 19 18 17 21 21 O 1.34934 * 119.99543 * 179.97438 * 19 18 17 22 22 S 1.70911 * 124.74003 * 180.02562 * 15 14 12 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 27 27 H 0.96998 * 119.99818 * 0.02562 * 14 12 2 28 28 H 1.07997 * 122.99384 * 180.22954 * 17 16 15 29 29 H 0.96699 * 113.99618 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2500 -2.4546 15 6 2.1683 -0.9019 -3.5844 16 7 2.9247 -1.9610 -3.5725 17 6 3.2742 -2.4619 -4.7292 18 6 2.7858 -1.7718 -5.8051 19 6 3.0147 -2.0946 -7.2118 20 8 3.6964 -3.0565 -7.5121 21 8 2.4699 -1.3259 -8.1777 22 16 1.8313 -0.4243 -5.1905 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7091 1.1614 3.4844 27 1 1.1493 0.5389 -2.5436 28 1 3.8959 -3.3397 -4.8263 29 1 2.6764 -1.6179 -9.0761 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210956.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:45 Heat of formation + Delta-G solvation = -75.452599 kcal Electronic energy + Delta-G solvation = -17601.598820 eV Core-core repulsion = 14424.139468 eV Total energy + Delta-G solvation = -3177.459352 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.54867 -39.99973 -38.52222 -36.21205 -34.63314 -33.96114 -30.89462 -29.87199 -26.03067 -25.29835 -23.82219 -22.63335 -20.84807 -19.54143 -18.70010 -18.11578 -16.70352 -16.52159 -16.16170 -15.94948 -15.43455 -15.18567 -14.70542 -14.32154 -13.77186 -13.45792 -13.26470 -12.69938 -11.85631 -11.75409 -11.68823 -11.15256 -11.00253 -10.94085 -10.82129 -10.71415 -10.39445 -10.10531 -9.86249 -9.52986 -9.17916 -8.80130 -8.48398 -8.23407 -6.17177 -4.21715 0.14000 0.79961 1.45406 2.19237 2.88614 2.93398 3.13954 3.30241 3.32929 3.39567 3.48125 4.33728 4.49465 4.99506 5.16735 5.36085 5.64314 5.88148 6.12444 6.30224 6.41442 6.59022 6.68494 7.12669 7.31060 7.60730 7.62112 7.77248 7.91638 8.12205 8.73622 8.87068 9.44751 10.90277 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.049936 B = 0.003969 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.580000 B = 7053.102700 C = 7531.128646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.038 3.962 3 H 0.061 0.939 4 C -0.508 4.508 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.507 3.493 13 O -0.460 6.460 14 N -0.635 5.635 15 C 0.314 3.686 16 N -0.494 5.494 17 C 0.191 3.809 18 C -0.349 4.349 19 C 0.570 3.430 20 O -0.514 6.514 21 O -0.506 6.506 22 S 0.176 5.824 23 H 0.099 0.901 24 H 0.013 0.987 25 H 0.035 0.965 26 H 0.264 0.736 27 H 0.423 0.577 28 H 0.191 0.809 29 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 1.296 -17.045 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 H 0.078 0.922 4 C -0.547 4.547 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.294 3.706 13 O -0.325 6.325 14 N -0.285 5.285 15 C -0.052 4.052 16 N -0.215 5.215 17 C 0.028 3.972 18 C -0.473 4.473 19 C 0.414 3.586 20 O -0.405 6.405 21 O -0.316 6.316 22 S 0.429 5.571 23 H 0.118 0.882 24 H 0.032 0.968 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.261 0.739 28 H 0.208 0.792 29 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.256 1.277 -16.213 16.311 hybrid contribution 0.624 -0.899 0.068 1.096 sum -0.632 0.379 -16.144 16.161 Atomic orbital electron populations 1.21823 0.96001 1.00322 1.01382 1.18977 0.94455 0.97032 0.87867 0.92179 1.21049 1.31768 1.13180 0.88678 0.90605 1.24935 0.94865 0.94989 0.99207 1.69835 1.36615 1.22827 1.24023 0.86437 0.79365 0.79710 0.81277 1.20065 1.21260 1.20068 1.22846 0.79330 0.85263 0.83131 1.90684 1.33028 1.24078 1.84739 1.44297 1.50653 1.30278 1.03317 1.24645 0.94264 0.93040 0.93230 1.66589 1.16772 1.11105 1.27078 1.22527 0.93671 0.97602 0.83384 1.24342 1.19712 1.07925 0.95349 1.18903 0.75726 0.79400 0.84611 1.90964 1.37944 1.28302 1.83288 1.85038 1.70973 1.55609 1.20020 1.83929 1.48843 1.27561 0.96764 0.88239 0.96808 0.94561 0.92642 0.73915 0.79186 0.73100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.87 37.16 0.33 -2.54 15 2 C 0.04 0.88 2.64 -92.92 -0.25 0.63 15 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 15 4 C -0.51 -13.65 8.37 -34.44 -0.29 -13.94 15 5 H 0.08 2.16 6.75 -52.49 -0.35 1.81 15 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 15 7 N -0.89 -23.78 11.32 55.43 0.63 -23.15 15 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 15 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 12 C 0.51 10.82 7.11 -10.98 -0.08 10.74 15 13 O -0.46 -11.53 14.06 5.56 0.08 -11.45 15 14 N -0.63 -10.30 5.27 -13.13 -0.07 -10.37 15 15 C 0.31 4.97 7.98 -87.53 -0.70 4.27 15 16 N -0.49 -8.87 8.56 -14.64 -0.13 -8.99 15 17 C 0.19 2.83 11.15 -18.49 -0.21 2.62 15 18 C -0.35 -4.60 6.51 -36.92 -0.24 -4.84 15 19 C 0.57 6.92 8.26 33.90 0.28 7.20 15 20 O -0.51 -7.39 17.60 -19.39 -0.34 -7.73 15 21 O -0.51 -4.47 13.44 -41.13 -0.55 -5.02 15 22 S 0.18 2.07 23.07 -107.50 -2.48 -0.41 15 23 H 0.10 2.31 6.07 -51.93 -0.32 2.00 15 24 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 15 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 15 26 H 0.26 6.74 8.31 -40.82 -0.34 6.40 15 27 H 0.42 5.22 8.24 -40.82 -0.34 4.88 15 28 H 0.19 2.45 8.06 -52.49 -0.42 2.03 15 29 H 0.41 1.68 8.98 45.56 0.41 2.09 15 LS Contribution 280.62 15.07 4.23 4.23 Total: -1.00 -32.75 280.62 -6.29 -39.04 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -1.39 Total: 2.12 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.24 Total: 5.67 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.43 Total: -42.52 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.82 Total: -24.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.48 Total: -0.41 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.75 -6.29 -39.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210956.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.414 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds