Wall clock time and date at job start Mon Mar 30 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 O 1.21272 * 120.00210 * 240.00056 * 12 2 1 14 14 N 1.34780 * 120.00249 * 59.99816 * 12 2 1 15 15 C 1.38366 * 120.00364 * 179.97438 * 14 12 2 16 16 N 1.30160 * 124.73507 * 359.69845 * 15 14 12 17 17 C 1.30808 * 117.30627 * 179.83531 * 16 15 14 18 18 C 1.36837 * 114.00116 * 0.44889 * 17 16 15 19 19 C 1.46138 * 126.12121 * 179.78861 * 18 17 16 20 20 O 1.21665 * 120.00347 * 359.97438 * 19 18 17 21 21 O 1.34934 * 119.99543 * 179.97438 * 19 18 17 22 22 S 1.70911 * 124.74003 * 180.02562 * 15 14 12 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 27 27 H 0.96998 * 119.99818 * 0.02562 * 14 12 2 28 28 H 1.07997 * 122.99384 * 180.22954 * 17 16 15 29 29 H 0.96699 * 113.99618 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2500 -2.4546 15 6 2.1683 -0.9019 -3.5844 16 7 2.9247 -1.9610 -3.5725 17 6 3.2742 -2.4619 -4.7292 18 6 2.7858 -1.7718 -5.8051 19 6 3.0147 -2.0946 -7.2118 20 8 3.6964 -3.0565 -7.5121 21 8 2.4699 -1.3259 -8.1777 22 16 1.8313 -0.4243 -5.1905 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7091 1.1614 3.4844 27 1 1.1493 0.5389 -2.5436 28 1 3.8959 -3.3397 -4.8263 29 1 2.6764 -1.6179 -9.0761 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210956.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:45 Heat of formation + Delta-G solvation = -99.426078 kcal Electronic energy + Delta-G solvation = -17602.638388 eV Core-core repulsion = 14424.139468 eV Total energy + Delta-G solvation = -3178.498920 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.76093 -41.11504 -39.88242 -37.10473 -36.07138 -35.85004 -32.67141 -31.11095 -27.39505 -27.10660 -25.12089 -23.99865 -22.23820 -20.71220 -19.95101 -19.13649 -18.29872 -18.00544 -17.46768 -17.00944 -16.82144 -16.51074 -16.45617 -15.47059 -15.25462 -14.97494 -14.48994 -14.39495 -13.55538 -13.00312 -12.77665 -12.72561 -12.69480 -12.62272 -12.30439 -12.04251 -12.00388 -11.99385 -11.21067 -11.08104 -10.59182 -10.55872 -10.24784 -9.40530 -8.17978 -6.27981 -0.98454 -0.29528 0.37061 1.08724 1.42741 1.42897 1.51461 1.72800 1.82749 2.03551 2.11800 2.43666 3.12659 3.25571 3.94458 4.16159 4.47024 4.69786 4.72033 4.88172 4.95917 5.10201 5.39853 5.44584 5.72085 5.79976 6.03791 6.22638 6.68062 6.79518 6.82218 7.19400 7.41113 8.87350 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.049936 B = 0.003969 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.580000 B = 7053.102700 C = 7531.128646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.034 3.966 3 H 0.057 0.943 4 C -0.534 4.534 5 H 0.048 0.952 6 C 0.025 3.975 7 N -0.905 5.905 8 Si 0.953 3.047 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.278 1.278 12 C 0.516 3.484 13 O -0.509 6.509 14 N -0.623 5.623 15 C 0.271 3.729 16 N -0.538 5.538 17 C 0.171 3.829 18 C -0.350 4.350 19 C 0.579 3.421 20 O -0.538 6.538 21 O -0.494 6.494 22 S 0.293 5.707 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.024 0.976 26 H 0.267 0.733 27 H 0.441 0.559 28 H 0.197 0.803 29 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 2.393 -19.218 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.012 3.988 3 H 0.075 0.925 4 C -0.572 4.572 5 H 0.066 0.934 6 C -0.175 4.175 7 N -0.544 5.544 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.303 3.697 13 O -0.379 6.379 14 N -0.276 5.276 15 C -0.092 4.092 16 N -0.260 5.260 17 C 0.008 3.992 18 C -0.475 4.475 19 C 0.422 3.578 20 O -0.430 6.430 21 O -0.307 6.307 22 S 0.547 5.453 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.282 0.718 28 H 0.214 0.786 29 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -2.207 2.427 -18.463 18.752 hybrid contribution 0.895 -1.194 0.474 1.565 sum -1.313 1.233 -17.990 18.079 Atomic orbital electron populations 1.21644 0.94324 0.99870 1.02529 1.18875 0.95750 0.96351 0.87795 0.92503 1.21206 1.32083 1.12960 0.90955 0.93351 1.25500 0.95105 0.95693 1.01178 1.69900 1.36751 1.23191 1.24563 0.85694 0.78610 0.78728 0.79092 1.20398 1.19858 1.20387 1.22295 0.78591 0.84355 0.84414 1.90660 1.35278 1.26093 1.85891 1.43585 1.50880 1.30767 1.02349 1.24717 0.95791 0.93856 0.94866 1.66512 1.17648 1.12447 1.29363 1.22554 0.94904 0.98527 0.83194 1.24746 1.18639 1.08098 0.95996 1.18698 0.75289 0.79120 0.84646 1.90968 1.38982 1.29429 1.83640 1.84976 1.69991 1.54557 1.21147 1.83481 1.45610 1.24402 0.91760 0.90528 0.92098 0.95705 0.92410 0.71754 0.78641 0.70310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.87 71.98 0.64 -4.53 15 2 C 0.03 1.58 2.64 -12.29 -0.03 1.54 15 3 H 0.06 2.65 8.14 -2.39 -0.02 2.63 15 4 C -0.53 -29.52 8.37 25.60 0.21 -29.30 15 5 H 0.05 2.89 6.75 -2.91 -0.02 2.88 15 6 C 0.03 1.36 5.30 84.66 0.45 1.81 15 7 N -0.91 -48.26 11.32 21.45 0.24 -48.01 15 8 Si 0.95 43.76 29.54 68.60 2.03 45.79 15 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 15 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 12 C 0.52 22.35 7.11 87.66 0.62 22.97 15 13 O -0.51 -26.57 14.06 -3.00 -0.04 -26.61 15 14 N -0.62 -19.61 5.27 -313.86 -1.65 -21.26 15 15 C 0.27 8.25 7.98 179.27 1.43 9.69 15 16 N -0.54 -19.35 8.56 -200.22 -1.71 -21.07 15 17 C 0.17 4.96 11.15 84.52 0.94 5.91 15 18 C -0.35 -8.43 6.51 23.99 0.16 -8.27 15 19 C 0.58 12.40 8.26 69.87 0.58 12.98 15 20 O -0.54 -14.42 17.60 19.30 0.34 -14.08 15 21 O -0.49 -6.70 13.44 -58.50 -0.79 -7.49 15 22 S 0.29 5.90 23.07 -56.49 -1.30 4.59 15 23 H 0.08 3.54 6.07 -2.39 -0.01 3.52 15 24 H 0.06 1.87 7.56 -2.39 -0.02 1.85 15 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 26 H 0.27 13.54 8.31 -92.71 -0.77 12.77 15 27 H 0.44 9.88 8.24 -92.71 -0.76 9.11 15 28 H 0.20 5.14 8.06 -2.91 -0.02 5.12 15 29 H 0.44 1.73 8.98 -74.06 -0.67 1.07 15 Total: -1.00 -72.72 280.62 1.92 -70.80 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -0.19 Total: 4.54 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.00 Total: 12.79 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -3.12 Total: -90.34 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.49 Total: -48.17 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.30 Total: 4.59 kcal Total: -72.72 1.92 -70.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210956.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.625 kcal (2) G-P(sol) polarization free energy of solvation -72.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds