Wall clock time and date at job start Mon Mar 30 2020 00:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35679 * 116.99921 * 2 1 4 4 C 1.40712 * 120.98165 * 270.21778 * 3 2 1 5 5 S 1.76193 * 120.55125 * 0.02744 * 4 3 2 6 6 C 1.81003 * 100.00153 * 180.25265 * 5 4 3 7 7 C 1.50705 * 109.47202 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99757 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99653 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99635 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00278 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47117 * 90.00058 * 11 9 7 13 13 H 1.48497 * 109.47017 * 209.99872 * 11 9 7 14 14 H 1.48501 * 109.46950 * 330.00319 * 11 9 7 15 15 N 1.32654 * 118.89666 * 180.27738 * 4 3 2 16 16 C 1.32029 * 121.00459 * 359.74779 * 15 4 3 17 17 N 1.31336 * 122.19524 * 0.02562 * 16 15 4 18 18 C 1.33644 * 120.99199 * 359.97438 * 17 16 15 19 19 C 1.47923 * 120.56122 * 179.97438 * 18 17 16 20 20 O 1.21449 * 119.99777 * 179.97438 * 19 18 17 21 21 O 1.34698 * 120.00165 * 359.97438 * 19 18 17 22 22 H 1.08996 * 109.47386 * 300.00117 * 1 2 3 23 23 H 1.09003 * 109.47571 * 59.99925 * 1 2 3 24 24 H 1.09000 * 109.47281 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47063 * 300.00227 * 6 5 4 26 26 H 1.09000 * 109.46939 * 59.99799 * 6 5 4 27 27 H 0.97004 * 119.99744 * 179.97438 * 10 9 7 28 28 H 1.07998 * 118.89940 * 180.02562 * 16 15 4 29 29 H 0.96700 * 117.00146 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 2.3697 1.8564 -1.2064 5 16 1.9825 1.1111 -2.7552 6 6 2.6293 2.3720 -3.8813 7 6 2.4017 1.9374 -5.3062 8 1 1.9153 0.9954 -5.5123 9 6 2.8144 2.7425 -6.3467 10 7 2.6163 2.3630 -7.5902 11 14 3.6563 4.3714 -5.9902 12 1 5.1235 4.1609 -5.8991 13 1 3.3610 5.3311 -7.0842 14 1 3.1539 4.9172 -4.7037 15 7 2.9767 3.0349 -1.1581 16 6 3.2709 3.6016 -0.0025 17 7 2.9829 3.0363 1.1475 18 6 2.3715 1.8489 1.1966 19 6 2.0521 1.2207 2.4972 20 8 1.4959 0.1416 2.5299 21 8 2.3780 1.8455 3.6451 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 2.1150 3.3164 -3.7032 26 1 3.6974 2.5015 -3.7067 27 1 2.9063 2.9295 -8.3223 28 1 3.7650 4.5619 -0.0029 29 1 2.1493 1.3957 4.4700 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599344142.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:16 Heat of formation + Delta-G solvation = -71.261257 kcal Electronic energy + Delta-G solvation = -17953.145581 eV Core-core repulsion = 14775.867979 eV Total energy + Delta-G solvation = -3177.277602 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.39068 -39.86302 -38.29046 -36.23726 -33.97761 -33.15911 -31.31850 -29.52899 -27.30802 -26.30795 -24.22496 -22.56071 -22.38419 -19.08876 -18.37015 -17.83508 -17.57056 -17.01621 -16.35876 -16.12474 -15.45770 -14.97540 -14.36722 -14.31912 -14.11005 -13.53180 -13.48495 -12.94454 -12.49800 -12.34028 -11.82041 -11.38311 -11.23356 -11.10416 -11.00151 -10.79630 -10.66528 -10.30459 -9.96118 -9.72232 -9.43690 -9.08281 -8.81322 -7.31827 -6.29389 -4.35016 0.14814 0.64554 1.73659 2.23930 2.54922 3.00108 3.19686 3.27855 3.29882 3.31015 3.67783 3.89535 4.24472 4.29467 4.61847 4.83304 5.03256 5.23941 5.27466 5.43106 5.63575 5.94909 6.11950 6.50078 6.56281 6.58644 7.17619 7.26151 7.57944 7.87976 8.12880 8.67446 9.25488 10.81751 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.033296 B = 0.005234 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.738152 B = 5348.709647 C = 6107.388645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.301 6.301 3 C 0.068 3.932 4 C 0.140 3.860 5 S 0.005 5.995 6 C 0.021 3.979 7 C -0.530 4.530 8 H 0.084 0.916 9 C 0.086 3.914 10 N -0.886 5.886 11 Si 0.877 3.123 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.259 1.259 15 N -0.493 5.493 16 C 0.302 3.698 17 N -0.485 5.485 18 C 0.121 3.879 19 C 0.543 3.457 20 O -0.482 6.482 21 O -0.492 6.492 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.270 0.730 28 H 0.207 0.793 29 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 0.512 18.564 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.215 6.215 3 C 0.010 3.990 4 C -0.120 4.120 5 S 0.248 5.752 6 C -0.127 4.127 7 C -0.569 4.569 8 H 0.102 0.898 9 C -0.120 4.120 10 N -0.523 5.523 11 Si 0.703 3.297 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.183 1.183 15 N -0.214 5.214 16 C 0.011 3.989 17 N -0.206 5.206 18 C -0.024 4.024 19 C 0.383 3.617 20 O -0.367 6.367 21 O -0.302 6.302 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.224 0.776 29 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.089 0.005 17.677 17.800 hybrid contribution 0.501 1.230 0.866 1.585 sum -1.588 1.235 18.543 18.652 Atomic orbital electron populations 1.23024 0.77544 1.04164 1.00614 1.86025 1.20631 1.21294 1.93504 1.19809 0.99618 0.88478 0.91086 1.25109 0.94124 0.92618 1.00100 1.86130 1.69865 1.29182 0.89975 1.21772 0.99688 0.94684 0.96602 1.20424 1.42148 1.08194 0.86139 0.89816 1.24811 0.94742 0.97933 0.94518 1.69858 1.45818 1.38069 0.98538 0.86798 0.80508 0.83542 0.78859 1.19727 1.20813 1.18321 1.68910 1.12910 1.09008 1.30603 1.24999 0.92984 0.99152 0.81760 1.68480 1.12739 1.08320 1.31084 1.20588 0.99225 0.92047 0.90499 1.20160 0.75504 0.82229 0.83809 1.90956 1.38044 1.20162 1.87520 1.84683 1.76517 1.52601 1.16408 0.93680 0.92705 0.87915 0.92840 0.93229 0.92000 0.77641 0.72872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.55 101.05 1.07 1.58 15 2 O -0.30 -4.85 8.43 -40.11 -0.34 -5.18 15 3 C 0.07 1.13 5.80 -38.15 -0.22 0.91 15 4 C 0.14 2.53 7.03 -16.26 -0.11 2.42 15 5 S 0.01 0.10 21.60 -107.50 -2.32 -2.22 15 6 C 0.02 0.48 3.70 36.01 0.13 0.61 15 7 C -0.53 -14.35 9.68 -34.44 -0.33 -14.69 15 8 H 0.08 2.45 7.95 -52.49 -0.42 2.03 15 9 C 0.09 2.37 5.47 -17.82 -0.10 2.27 15 10 N -0.89 -25.86 13.96 55.43 0.77 -25.08 15 11 Si 0.88 20.40 27.47 -169.99 -4.67 15.73 15 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 14 H -0.26 -5.79 6.54 56.52 0.37 -5.42 15 15 N -0.49 -8.59 9.28 -13.23 -0.12 -8.72 15 16 C 0.30 4.32 12.26 -92.34 -1.13 3.18 15 17 N -0.49 -7.13 10.25 -11.19 -0.11 -7.25 15 18 C 0.12 1.84 6.79 -82.61 -0.56 1.28 15 19 C 0.54 7.25 8.33 34.70 0.29 7.54 15 20 O -0.48 -7.06 15.00 -26.39 -0.40 -7.45 15 21 O -0.49 -4.95 13.28 -40.49 -0.54 -5.49 15 22 H 0.04 0.54 7.55 -51.93 -0.39 0.15 15 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 24 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.05 1.24 7.20 -51.92 -0.37 0.86 15 26 H 0.05 1.15 7.56 -51.92 -0.39 0.75 15 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 28 H 0.21 2.10 8.06 -52.49 -0.42 1.68 15 29 H 0.41 1.86 9.11 45.56 0.42 2.28 15 LS Contribution 281.64 15.07 4.24 4.24 Total: -1.00 -31.96 281.64 -6.05 -38.01 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -1.60 Total: -1.70 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.97 Total: 5.10 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.54 Total: -41.05 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.27 Total: -18.12 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.32 Total: -2.22 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.96 -6.05 -38.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599344142.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.254 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds