Wall clock time and date at job start Mon Mar 30 2020 00:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35679 * 116.99921 * 2 1 4 4 C 1.40712 * 120.98165 * 270.21778 * 3 2 1 5 5 S 1.76193 * 120.55125 * 0.02744 * 4 3 2 6 6 C 1.81003 * 100.00153 * 180.25265 * 5 4 3 7 7 C 1.50705 * 109.47202 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99757 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99653 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99635 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00278 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47117 * 90.00058 * 11 9 7 13 13 H 1.48497 * 109.47017 * 209.99872 * 11 9 7 14 14 H 1.48501 * 109.46950 * 330.00319 * 11 9 7 15 15 N 1.32654 * 118.89666 * 180.27738 * 4 3 2 16 16 C 1.32029 * 121.00459 * 359.74779 * 15 4 3 17 17 N 1.31336 * 122.19524 * 0.02562 * 16 15 4 18 18 C 1.33644 * 120.99199 * 359.97438 * 17 16 15 19 19 C 1.47923 * 120.56122 * 179.97438 * 18 17 16 20 20 O 1.21449 * 119.99777 * 179.97438 * 19 18 17 21 21 O 1.34698 * 120.00165 * 359.97438 * 19 18 17 22 22 H 1.08996 * 109.47386 * 300.00117 * 1 2 3 23 23 H 1.09003 * 109.47571 * 59.99925 * 1 2 3 24 24 H 1.09000 * 109.47281 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47063 * 300.00227 * 6 5 4 26 26 H 1.09000 * 109.46939 * 59.99799 * 6 5 4 27 27 H 0.97004 * 119.99744 * 179.97438 * 10 9 7 28 28 H 1.07998 * 118.89940 * 180.02562 * 16 15 4 29 29 H 0.96700 * 117.00146 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 2.3697 1.8564 -1.2064 5 16 1.9825 1.1111 -2.7552 6 6 2.6293 2.3720 -3.8813 7 6 2.4017 1.9374 -5.3062 8 1 1.9153 0.9954 -5.5123 9 6 2.8144 2.7425 -6.3467 10 7 2.6163 2.3630 -7.5902 11 14 3.6563 4.3714 -5.9902 12 1 5.1235 4.1609 -5.8991 13 1 3.3610 5.3311 -7.0842 14 1 3.1539 4.9172 -4.7037 15 7 2.9767 3.0349 -1.1581 16 6 3.2709 3.6016 -0.0025 17 7 2.9829 3.0363 1.1475 18 6 2.3715 1.8489 1.1966 19 6 2.0521 1.2207 2.4972 20 8 1.4959 0.1416 2.5299 21 8 2.3780 1.8455 3.6451 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 2.1150 3.3164 -3.7032 26 1 3.6974 2.5015 -3.7067 27 1 2.9063 2.9295 -8.3223 28 1 3.7650 4.5619 -0.0029 29 1 2.1493 1.3957 4.4700 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599344142.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:15 Heat of formation + Delta-G solvation = -93.591929 kcal Electronic energy + Delta-G solvation = -17954.113911 eV Core-core repulsion = 14775.867979 eV Total energy + Delta-G solvation = -3178.245932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.56981 -40.89991 -39.45558 -37.17174 -35.33930 -35.11142 -32.51225 -31.52055 -28.37454 -27.49634 -25.58349 -24.38067 -23.48788 -20.24523 -19.62303 -19.01426 -18.98220 -18.59334 -17.51943 -17.47135 -16.51350 -16.30398 -16.07304 -15.55858 -15.34969 -15.12370 -14.70183 -14.49899 -14.35227 -13.42815 -12.84395 -12.78536 -12.67738 -12.52224 -12.35730 -12.25872 -12.09961 -11.84499 -11.75026 -11.29345 -10.97125 -10.87929 -10.32951 -8.84366 -8.39869 -6.51454 -1.03748 -0.61008 0.29346 1.16949 1.29764 1.37195 1.41883 1.51329 1.57073 2.14196 2.29909 2.47973 2.79767 2.94287 3.07325 3.47160 3.71036 4.24137 4.29786 4.40738 4.68068 4.68779 4.71784 4.87022 5.20417 5.26930 5.38410 5.99735 6.02230 6.52146 6.59552 6.84372 7.13091 8.74843 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.033296 B = 0.005234 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.738152 B = 5348.709647 C = 6107.388645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.063 3.937 4 C 0.132 3.868 5 S -0.012 6.012 6 C 0.029 3.971 7 C -0.539 4.539 8 H 0.045 0.955 9 C 0.029 3.971 10 N -0.933 5.933 11 Si 0.946 3.054 12 H -0.264 1.264 13 H -0.278 1.278 14 H -0.242 1.242 15 N -0.512 5.512 16 C 0.306 3.694 17 N -0.476 5.476 18 C 0.121 3.879 19 C 0.550 3.450 20 O -0.497 6.497 21 O -0.482 6.482 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.123 0.877 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.274 0.726 28 H 0.249 0.751 29 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 2.109 21.269 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.006 3.994 4 C -0.128 4.128 5 S 0.231 5.769 6 C -0.120 4.120 7 C -0.578 4.578 8 H 0.064 0.936 9 C -0.173 4.173 10 N -0.572 5.572 11 Si 0.768 3.232 12 H -0.188 1.188 13 H -0.203 1.203 14 H -0.165 1.165 15 N -0.233 5.233 16 C 0.016 3.984 17 N -0.196 5.196 18 C -0.025 4.025 19 C 0.391 3.609 20 O -0.384 6.384 21 O -0.296 6.296 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.141 0.859 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.264 0.736 29 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -1.430 1.604 20.431 20.544 hybrid contribution 0.261 0.685 0.228 0.767 sum -1.169 2.288 20.660 20.819 Atomic orbital electron populations 1.23227 0.75981 1.05678 1.00833 1.86001 1.22194 1.21269 1.93522 1.19834 0.99903 0.88682 0.91022 1.24841 0.95424 0.93429 0.99136 1.86025 1.71176 1.28675 0.91063 1.21441 0.99803 0.95638 0.95108 1.20627 1.41505 1.06912 0.88765 0.93634 1.25778 0.95379 1.02014 0.94110 1.69996 1.47452 1.39939 0.99773 0.85718 0.79513 0.78558 0.79441 1.18834 1.20290 1.16487 1.68885 1.13216 1.08845 1.32339 1.25810 0.91965 1.00010 0.80612 1.68607 1.11949 1.07908 1.31141 1.20908 0.98373 0.92010 0.91200 1.19798 0.75279 0.81818 0.84053 1.90959 1.38822 1.20803 1.87788 1.84617 1.75792 1.52417 1.16742 0.92875 0.92994 0.85871 0.92736 0.93146 0.91689 0.73557 0.69836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.55 113.37 1.20 2.08 15 2 O -0.32 -9.87 8.43 -69.53 -0.59 -10.46 15 3 C 0.06 2.01 5.80 23.20 0.13 2.15 15 4 C 0.13 4.62 7.03 85.17 0.60 5.22 15 5 S -0.01 -0.47 21.60 -56.49 -1.22 -1.69 15 6 C 0.03 1.32 3.70 71.24 0.26 1.59 15 7 C -0.54 -30.07 9.68 25.60 0.25 -29.82 15 8 H 0.05 2.81 7.95 -2.91 -0.02 2.79 15 9 C 0.03 1.60 5.47 84.65 0.46 2.06 15 10 N -0.93 -55.94 13.96 21.45 0.30 -55.64 15 11 Si 0.95 41.78 27.47 68.60 1.88 43.67 15 12 H -0.26 -11.23 7.11 99.48 0.71 -10.53 15 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 14 H -0.24 -9.91 6.54 99.48 0.65 -9.26 15 15 N -0.51 -16.80 9.28 -195.77 -1.82 -18.62 15 16 C 0.31 7.75 12.26 180.95 2.22 9.97 15 17 N -0.48 -12.49 10.25 -189.32 -1.94 -14.43 15 18 C 0.12 3.40 6.79 41.76 0.28 3.68 15 19 C 0.55 13.21 8.33 70.39 0.59 13.79 15 20 O -0.50 -13.45 15.00 26.86 0.40 -13.04 15 21 O -0.48 -7.98 13.28 -56.07 -0.74 -8.73 15 22 H 0.05 1.19 7.55 -2.39 -0.02 1.18 15 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 15 24 H 0.12 2.43 8.14 -2.39 -0.02 2.41 15 25 H 0.05 2.48 7.20 -2.40 -0.02 2.47 15 26 H 0.05 2.30 7.56 -2.40 -0.02 2.28 15 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 28 H 0.25 3.92 8.06 -2.91 -0.02 3.90 15 29 H 0.44 2.29 9.11 -74.06 -0.67 1.61 15 Total: -1.00 -69.70 281.64 2.75 -66.95 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: 0.48 Total: 1.27 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.99 Total: 10.72 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -3.46 Total: -88.69 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.93 Total: -32.23 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.67 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -1.22 Total: -1.69 kcal Total: -69.70 2.75 -66.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599344142.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.643 kcal (2) G-P(sol) polarization free energy of solvation -69.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds