Wall clock time and date at job start Mon Mar 30 2020 01:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40313 * 126.64784 * 2 1 4 4 C 1.35177 * 107.12760 * 180.28258 * 3 2 1 5 5 C 1.50700 * 125.61089 * 179.72532 * 4 3 2 6 6 H 1.08996 * 109.46944 * 0.02562 * 5 4 3 7 7 C 1.52999 * 109.46687 * 119.99956 * 5 4 3 8 8 S 1.81392 * 109.46937 * 239.99983 * 5 4 3 9 9 C 1.81398 * 103.00049 * 174.99960 * 8 5 4 10 10 C 1.50697 * 109.47717 * 179.97438 * 9 8 5 11 11 H 1.08003 * 119.99531 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00352 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99825 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00022 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47277 * 90.00242 * 14 12 10 16 16 H 1.48506 * 109.47503 * 210.00028 * 14 12 10 17 17 H 1.48505 * 109.47531 * 330.00222 * 14 12 10 18 18 O 1.33910 * 108.77686 * 359.74687 * 4 3 2 19 19 C 1.34934 * 109.38797 * 359.97438 * 18 4 3 20 20 C 1.46472 * 126.00048 * 179.97438 * 19 18 4 21 21 O 1.21624 * 119.99739 * 180.02562 * 20 19 18 22 22 O 1.34890 * 120.00039 * 0.02783 * 20 19 18 23 23 H 1.08999 * 109.47528 * 270.17074 * 1 2 3 24 24 H 1.09000 * 109.47676 * 30.17693 * 1 2 3 25 25 H 1.09004 * 109.47098 * 150.17347 * 1 2 3 26 26 H 1.07998 * 126.44123 * 0.02562 * 3 2 1 27 27 H 1.08996 * 109.47385 * 60.00324 * 7 5 4 28 28 H 1.09007 * 109.46406 * 179.97438 * 7 5 4 29 29 H 1.09002 * 109.47374 * 299.99447 * 7 5 4 30 30 H 1.09005 * 109.47448 * 300.00375 * 9 8 5 31 31 H 1.09008 * 109.47142 * 59.99706 * 9 8 5 32 32 H 0.97006 * 119.99610 * 179.97438 * 13 12 10 33 33 H 0.96700 * 117.00163 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3444 1.1258 0.0000 4 6 3.6185 0.6741 -0.0064 5 6 4.8549 1.5356 -0.0146 6 1 4.5655 2.5865 -0.0142 7 6 5.6925 1.2374 1.2305 8 16 5.8316 1.1774 -1.5006 9 6 7.1717 2.3968 -1.4119 10 6 8.0860 2.2256 -2.5975 11 1 7.8811 1.4601 -3.3313 12 6 9.1840 3.0463 -2.7456 13 7 9.9816 2.8972 -3.7806 14 14 9.5379 4.3708 -1.4768 15 1 10.4084 3.8144 -0.4100 16 1 10.2257 5.5125 -2.1317 17 1 8.2610 4.8385 -0.8800 18 8 3.6012 -0.6649 -0.0046 19 6 2.3227 -1.0963 0.0034 20 6 1.8857 -2.4943 0.0071 21 8 0.6990 -2.7605 0.0140 22 8 2.7995 -3.4865 0.0030 23 1 -0.3634 0.0031 1.0276 24 1 -0.3634 0.8884 -0.5166 25 1 -0.3633 -0.8916 -0.5112 26 1 2.0303 2.1590 0.0004 27 1 5.9820 0.1865 1.2306 28 1 6.5871 1.8603 1.2243 29 1 5.1056 1.4527 2.1234 30 1 6.7496 3.4018 -1.4201 31 1 7.7379 2.2481 -0.4924 32 1 10.7539 3.4748 -3.8849 33 1 2.4632 -4.3932 0.0053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600142251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:31 Heat of formation + Delta-G solvation = -87.689427 kcal Electronic energy + Delta-G solvation = -17807.368677 eV Core-core repulsion = 14732.919039 eV Total energy + Delta-G solvation = -3074.449637 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.89309 -40.06677 -36.43545 -34.29276 -34.17233 -33.11084 -29.97083 -29.25527 -28.03305 -24.82185 -22.83395 -22.41564 -21.53262 -19.72934 -18.52193 -17.60081 -17.09187 -16.75541 -16.07529 -15.32574 -15.05736 -14.53063 -14.08650 -13.85618 -13.60776 -13.37252 -13.24335 -13.09663 -12.84078 -12.61325 -12.57039 -12.15304 -11.81567 -11.70663 -11.52843 -10.90630 -10.86227 -10.48037 -10.22279 -9.81636 -9.69333 -9.10095 -8.77468 -8.59786 -6.97873 -6.23683 -4.26749 0.65080 1.82503 2.28444 2.56190 2.71587 3.06335 3.16045 3.23083 3.23775 3.47977 4.24839 4.33743 4.55527 4.88571 5.01252 5.07056 5.10096 5.25026 5.38304 5.48513 5.54406 5.68859 5.77011 5.87310 5.90644 6.10931 6.18819 6.28521 6.47941 6.59629 6.81545 7.34633 7.63835 8.23662 8.78808 9.31049 10.88324 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034536 B = 0.004041 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.547887 B = 6926.539807 C = 7230.908749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.063 4.063 3 C -0.221 4.221 4 C 0.085 3.915 5 C -0.008 4.008 6 H 0.115 0.885 7 C -0.147 4.147 8 S -0.238 6.238 9 C 0.045 3.955 10 C -0.517 4.517 11 H 0.084 0.916 12 C 0.081 3.919 13 N -0.889 5.889 14 Si 0.878 3.122 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.266 1.266 18 O -0.134 6.134 19 C -0.087 4.087 20 C 0.576 3.424 21 O -0.500 6.500 22 O -0.502 6.502 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.161 0.839 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.269 0.731 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.040 -5.158 11.290 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.065 4.065 3 C -0.242 4.242 4 C 0.030 3.970 5 C -0.136 4.136 6 H 0.133 0.867 7 C -0.206 4.206 8 S -0.008 6.008 9 C -0.102 4.102 10 C -0.555 4.555 11 H 0.102 0.898 12 C -0.124 4.124 13 N -0.526 5.526 14 Si 0.704 3.296 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.191 1.191 18 O -0.029 6.029 19 C -0.137 4.137 20 C 0.421 3.579 21 O -0.391 6.391 22 O -0.313 6.313 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.179 0.821 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -15.937 -5.740 10.407 19.881 hybrid contribution 0.348 1.199 1.402 1.877 sum -15.589 -4.541 11.809 20.077 Atomic orbital electron populations 1.20481 0.87930 1.03912 1.03027 1.20587 0.97464 0.90544 0.97883 1.21436 0.90788 1.00320 1.11632 1.22144 0.95964 0.80473 0.98430 1.21760 0.92591 0.99008 1.00275 0.86723 1.22109 0.99641 1.04004 0.94839 1.87236 1.32286 1.52786 1.28536 1.21516 0.93486 0.93801 1.01446 1.20433 1.08179 1.19882 1.07049 0.89793 1.24846 0.95204 0.96833 0.95484 1.69865 1.15138 1.39056 1.28574 0.86816 0.79027 0.81870 0.81862 1.19798 1.20731 1.19051 1.84144 1.27292 1.21559 1.69888 1.20308 0.82335 0.91429 1.19648 1.18806 0.83140 0.83570 0.72383 1.90950 1.17207 1.83295 1.47682 1.84717 1.41583 1.19571 1.85451 0.90492 0.90841 0.89640 0.82092 0.90732 0.90821 0.92013 0.94519 0.94756 0.92127 0.72458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.81 36.00 0.35 -0.62 16 2 C -0.06 -0.80 6.20 -104.42 -0.65 -1.45 16 3 C -0.22 -2.80 10.70 -39.89 -0.43 -3.23 16 4 C 0.08 1.26 5.83 -35.40 -0.21 1.05 16 5 C -0.01 -0.13 3.25 -27.88 -0.09 -0.22 16 6 H 0.11 1.55 8.10 -51.93 -0.42 1.13 16 7 C -0.15 -2.02 9.08 37.16 0.34 -1.69 16 8 S -0.24 -4.90 21.05 -107.50 -2.26 -7.17 16 9 C 0.05 1.04 4.46 36.00 0.16 1.20 16 10 C -0.52 -14.43 9.68 -34.44 -0.33 -14.76 16 11 H 0.08 2.60 7.96 -52.48 -0.42 2.18 16 12 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 13 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 14 Si 0.88 20.31 27.47 -169.99 -4.67 15.64 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 18 O -0.13 -2.15 10.67 4.76 0.05 -2.10 16 19 C -0.09 -1.25 7.18 -36.84 -0.26 -1.51 16 20 C 0.58 7.45 8.30 34.05 0.28 7.74 16 21 O -0.50 -6.80 15.53 -19.36 -0.30 -7.10 16 22 O -0.50 -5.38 13.44 -42.45 -0.57 -5.95 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.93 6.45 -51.93 -0.34 0.59 16 26 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.03 6.92 -51.93 -0.36 0.68 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.82 7.20 -51.92 -0.37 0.45 16 31 H 0.03 0.76 6.57 -51.92 -0.34 0.42 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.42 2.09 9.11 45.56 0.42 2.50 16 LS Contribution 304.09 15.07 4.58 4.58 Total: -1.00 -32.36 304.09 -6.44 -38.80 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -3.11 Total: 0.30 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.93 Total: -11.31 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.77 Total: -25.70 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.82 Total: -15.16 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -2.26 Total: -7.17 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.36 -6.44 -38.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600142251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.885 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds