Wall clock time and date at job start Mon Mar 30 2020 01:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40313 * 126.64784 * 2 1 4 4 C 1.35177 * 107.12760 * 180.28258 * 3 2 1 5 5 C 1.50700 * 125.61089 * 179.72532 * 4 3 2 6 6 H 1.08996 * 109.46944 * 0.02562 * 5 4 3 7 7 C 1.52999 * 109.46687 * 119.99956 * 5 4 3 8 8 S 1.81392 * 109.46937 * 239.99983 * 5 4 3 9 9 C 1.81398 * 103.00049 * 174.99960 * 8 5 4 10 10 C 1.50697 * 109.47717 * 179.97438 * 9 8 5 11 11 H 1.08003 * 119.99531 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00352 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99825 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00022 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47277 * 90.00242 * 14 12 10 16 16 H 1.48506 * 109.47503 * 210.00028 * 14 12 10 17 17 H 1.48505 * 109.47531 * 330.00222 * 14 12 10 18 18 O 1.33910 * 108.77686 * 359.74687 * 4 3 2 19 19 C 1.34934 * 109.38797 * 359.97438 * 18 4 3 20 20 C 1.46472 * 126.00048 * 179.97438 * 19 18 4 21 21 O 1.21624 * 119.99739 * 180.02562 * 20 19 18 22 22 O 1.34890 * 120.00039 * 0.02783 * 20 19 18 23 23 H 1.08999 * 109.47528 * 270.17074 * 1 2 3 24 24 H 1.09000 * 109.47676 * 30.17693 * 1 2 3 25 25 H 1.09004 * 109.47098 * 150.17347 * 1 2 3 26 26 H 1.07998 * 126.44123 * 0.02562 * 3 2 1 27 27 H 1.08996 * 109.47385 * 60.00324 * 7 5 4 28 28 H 1.09007 * 109.46406 * 179.97438 * 7 5 4 29 29 H 1.09002 * 109.47374 * 299.99447 * 7 5 4 30 30 H 1.09005 * 109.47448 * 300.00375 * 9 8 5 31 31 H 1.09008 * 109.47142 * 59.99706 * 9 8 5 32 32 H 0.97006 * 119.99610 * 179.97438 * 13 12 10 33 33 H 0.96700 * 117.00163 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3444 1.1258 0.0000 4 6 3.6185 0.6741 -0.0064 5 6 4.8549 1.5356 -0.0146 6 1 4.5655 2.5865 -0.0142 7 6 5.6925 1.2374 1.2305 8 16 5.8316 1.1774 -1.5006 9 6 7.1717 2.3968 -1.4119 10 6 8.0860 2.2256 -2.5975 11 1 7.8811 1.4601 -3.3313 12 6 9.1840 3.0463 -2.7456 13 7 9.9816 2.8972 -3.7806 14 14 9.5379 4.3708 -1.4768 15 1 10.4084 3.8144 -0.4100 16 1 10.2257 5.5125 -2.1317 17 1 8.2610 4.8385 -0.8800 18 8 3.6012 -0.6649 -0.0046 19 6 2.3227 -1.0963 0.0034 20 6 1.8857 -2.4943 0.0071 21 8 0.6990 -2.7605 0.0140 22 8 2.7995 -3.4865 0.0030 23 1 -0.3634 0.0031 1.0276 24 1 -0.3634 0.8884 -0.5166 25 1 -0.3633 -0.8916 -0.5112 26 1 2.0303 2.1590 0.0004 27 1 5.9820 0.1865 1.2306 28 1 6.5871 1.8603 1.2243 29 1 5.1056 1.4527 2.1234 30 1 6.7496 3.4018 -1.4201 31 1 7.7379 2.2481 -0.4924 32 1 10.7539 3.4748 -3.8849 33 1 2.4632 -4.3932 0.0053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600142251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:31 Heat of formation + Delta-G solvation = -108.892861 kcal Electronic energy + Delta-G solvation = -17808.288127 eV Core-core repulsion = 14732.919039 eV Total energy + Delta-G solvation = -3075.369087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.94074 -41.02570 -37.36004 -35.41970 -35.20396 -35.15734 -31.56244 -30.68695 -28.92681 -25.86716 -24.74811 -23.51986 -22.61897 -20.77880 -19.48521 -19.11562 -18.56511 -17.91299 -17.47865 -16.42684 -16.21837 -16.18127 -15.56002 -15.02181 -14.80363 -14.67868 -14.41610 -14.31408 -14.06625 -13.83300 -13.64875 -13.30432 -13.02703 -12.76959 -12.73317 -12.55798 -12.12165 -12.02290 -11.82746 -11.69828 -10.88585 -10.81903 -10.63894 -9.69397 -8.61747 -8.36692 -6.47414 -0.41376 0.59136 1.29574 1.35307 1.37716 1.40880 1.48907 1.72231 1.84484 2.16129 2.30602 2.96619 3.26691 3.62919 3.81268 4.03099 4.11387 4.26646 4.43958 4.56921 4.61592 4.70550 4.72504 4.77078 4.79340 4.99495 5.06264 5.14492 5.22626 5.34504 5.46540 5.80590 6.06744 6.56971 6.82381 7.15076 8.79453 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034536 B = 0.004041 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.547887 B = 6926.539807 C = 7230.908749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.062 4.062 3 C -0.202 4.202 4 C 0.057 3.943 5 C 0.013 3.987 6 H 0.142 0.858 7 C -0.145 4.145 8 S -0.296 6.296 9 C 0.055 3.945 10 C -0.533 4.533 11 H 0.031 0.969 12 C 0.019 3.981 13 N -0.942 5.942 14 Si 0.955 3.045 15 H -0.261 1.261 16 H -0.280 1.280 17 H -0.237 1.237 18 O -0.159 6.159 19 C -0.110 4.110 20 C 0.578 3.422 21 O -0.511 6.511 22 O -0.505 6.505 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.193 0.807 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.272 0.728 33 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.779 -3.497 13.875 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.064 4.064 3 C -0.222 4.222 4 C 0.003 3.997 5 C -0.114 4.114 6 H 0.159 0.841 7 C -0.204 4.204 8 S -0.067 6.067 9 C -0.093 4.093 10 C -0.571 4.571 11 H 0.049 0.951 12 C -0.181 4.181 13 N -0.581 5.581 14 Si 0.776 3.224 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.160 1.160 18 O -0.055 6.055 19 C -0.160 4.160 20 C 0.423 3.577 21 O -0.403 6.403 22 O -0.320 6.320 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.210 0.790 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -17.686 -4.112 12.992 22.327 hybrid contribution 0.774 0.518 0.565 1.090 sum -16.912 -3.594 13.556 21.970 Atomic orbital electron populations 1.20560 0.85932 1.04447 1.04133 1.21012 0.98794 0.90038 0.96565 1.21827 0.89616 1.01708 1.09092 1.22211 0.96491 0.80291 1.00688 1.21820 0.91870 1.00589 0.97148 0.84059 1.22097 0.99851 1.03103 0.95338 1.87360 1.33028 1.52754 1.33528 1.21261 0.93578 0.94956 0.99522 1.20662 1.09807 1.18777 1.07903 0.95083 1.25942 0.94608 0.99654 0.97928 1.70036 1.16074 1.40747 1.31234 0.85602 0.80114 0.77957 0.78698 1.18562 1.20503 1.16020 1.84107 1.28343 1.22384 1.70693 1.20800 0.82207 0.92646 1.20313 1.18725 0.83100 0.83681 0.72179 1.90940 1.17496 1.83497 1.48351 1.84678 1.41445 1.20935 1.84916 0.88968 0.88661 0.90711 0.78959 0.92173 0.90981 0.88752 0.93181 0.93338 0.91840 0.69828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.81 71.23 0.70 -0.92 16 2 C -0.06 -1.44 6.20 -19.73 -0.12 -1.56 16 3 C -0.20 -4.47 10.70 22.07 0.24 -4.24 16 4 C 0.06 1.58 5.83 24.98 0.15 1.73 16 5 C 0.01 0.38 3.25 29.85 0.10 0.48 16 6 H 0.14 3.26 8.10 -2.39 -0.02 3.24 16 7 C -0.15 -3.63 9.08 71.98 0.65 -2.97 16 8 S -0.30 -12.24 21.05 -56.49 -1.19 -13.43 16 9 C 0.05 2.48 4.46 71.23 0.32 2.80 16 10 C -0.53 -30.68 9.68 25.60 0.25 -30.43 16 11 H 0.03 2.05 7.96 -2.91 -0.02 2.03 16 12 C 0.02 1.05 5.47 84.65 0.46 1.51 16 13 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 14 Si 0.96 41.09 27.47 68.60 1.88 42.97 16 15 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.24 -9.04 6.54 99.48 0.65 -8.39 16 18 O -0.16 -5.01 10.67 -4.83 -0.05 -5.06 16 19 C -0.11 -3.03 7.18 24.04 0.17 -2.86 16 20 C 0.58 14.51 8.30 69.97 0.58 15.10 16 21 O -0.51 -13.36 15.53 19.43 0.30 -13.05 16 22 O -0.51 -10.49 13.44 -56.67 -0.76 -11.26 16 23 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.48 6.45 -2.38 -0.02 1.46 16 26 H 0.19 2.92 8.06 -2.91 -0.02 2.89 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.82 6.92 -2.38 -0.02 1.80 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 2.12 7.20 -2.39 -0.02 2.11 16 31 H 0.05 2.05 6.57 -2.39 -0.02 2.04 16 32 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 33 H 0.44 3.94 9.11 -74.06 -0.67 3.26 16 Total: -1.00 -73.35 304.09 4.39 -68.97 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.41 Total: 9.86 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.49 Total: -21.37 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.30 Total: -57.63 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.51 Total: -29.37 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.88 Total: 42.97 kcal Atomic # 16 Polarization: -12.24 SS G_CDS: -1.19 Total: -13.43 kcal Total: -73.35 4.39 -68.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600142251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.926 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds