Wall clock time and date at job start Mon Mar 30 2020 01:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40306 * 126.64949 * 2 1 4 4 C 1.35168 * 107.12751 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.60952 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47205 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.47089 * 239.99754 * 5 4 3 8 8 S 1.81397 * 109.47474 * 119.99284 * 5 4 3 9 9 C 1.81404 * 103.00143 * 184.99901 * 8 5 4 10 10 C 1.50701 * 109.47098 * 179.97438 * 9 8 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 O 1.33914 * 108.78281 * 0.25751 * 4 3 2 19 19 C 1.34942 * 109.37912 * 359.56758 * 18 4 3 20 20 C 1.46465 * 125.99388 * 180.13251 * 19 18 4 21 21 O 1.21626 * 119.99693 * 180.35126 * 20 19 18 22 22 O 1.34897 * 120.00251 * 0.35454 * 20 19 18 23 23 H 1.09002 * 109.46993 * 90.00763 * 1 2 3 24 24 H 1.09007 * 109.46937 * 210.00305 * 1 2 3 25 25 H 1.08995 * 109.47339 * 330.00361 * 1 2 3 26 26 H 1.08000 * 126.43545 * 359.93395 * 3 2 1 27 27 H 1.08998 * 109.47191 * 59.99716 * 7 5 4 28 28 H 1.09002 * 109.47205 * 180.02562 * 7 5 4 29 29 H 1.08999 * 109.46852 * 299.99342 * 7 5 4 30 30 H 1.09002 * 109.47124 * 60.00087 * 9 8 5 31 31 H 1.09001 * 109.46975 * 300.00209 * 9 8 5 32 32 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 33 33 H 0.96699 * 116.99839 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3445 1.1257 0.0000 4 6 3.6185 0.6740 0.0006 5 6 4.8549 1.5355 0.0013 6 1 4.5655 2.5864 0.0009 7 6 5.6864 1.2355 -1.2475 8 16 5.8391 1.1796 1.4830 9 6 7.1788 2.3989 1.3856 10 6 8.0983 2.2303 2.5677 11 1 7.8971 1.4659 3.3036 12 6 9.1969 3.0513 2.7090 13 7 9.4421 3.9818 1.8126 14 14 10.3370 2.8419 4.1738 15 1 10.9117 1.4726 4.1620 16 1 11.4336 3.8401 4.0942 17 1 9.5720 3.0469 5.4300 18 8 3.6012 -0.6650 -0.0048 19 6 2.3226 -1.0964 0.0007 20 6 1.8858 -2.4943 0.0003 21 8 0.6990 -2.7606 -0.0008 22 8 2.7996 -3.4866 0.0011 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 2.0303 2.1590 -0.0010 27 1 5.0950 1.4494 -2.1378 28 1 6.5809 1.8583 -1.2468 29 1 5.9758 0.1846 -1.2474 30 1 6.7567 3.4038 1.3945 31 1 7.7404 2.2488 0.4636 32 1 10.2148 4.5597 1.9123 33 1 2.4632 -4.3932 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600142252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:33 Heat of formation + Delta-G solvation = -111.931281 kcal Electronic energy + Delta-G solvation = -17757.809455 eV Core-core repulsion = 14682.308613 eV Total energy + Delta-G solvation = -3075.500843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.94314 -41.02089 -37.35379 -35.43640 -35.26630 -35.16980 -31.04909 -30.42444 -28.92269 -25.87998 -25.23700 -23.53699 -22.63500 -20.77881 -19.48200 -18.75791 -18.52336 -17.87219 -17.38607 -16.57721 -16.29886 -16.19738 -15.39655 -14.94413 -14.67017 -14.52816 -14.37531 -14.26028 -14.05704 -13.82668 -13.63960 -13.30955 -13.00882 -12.79258 -12.72774 -12.64668 -12.49568 -11.89526 -11.78074 -11.59035 -10.81858 -10.73668 -10.65324 -9.69915 -8.57530 -8.33343 -6.45942 -0.40812 0.63061 1.29600 1.38730 1.42460 1.43167 1.52473 1.72422 1.89580 2.15913 2.37095 3.01702 3.26756 3.62748 3.80045 4.02256 4.11452 4.26210 4.43705 4.58358 4.69433 4.70624 4.77353 4.94902 4.95294 4.99301 5.06075 5.14671 5.22683 5.46646 5.56801 5.80377 5.89062 6.60235 6.83082 7.21861 8.78006 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.003875 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.130993 B = 7223.171903 C = 7553.547272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.061 4.061 3 C -0.203 4.203 4 C 0.059 3.941 5 C 0.017 3.983 6 H 0.133 0.867 7 C -0.141 4.141 8 S -0.306 6.306 9 C 0.098 3.902 10 C -0.540 4.540 11 H 0.058 0.942 12 C 0.020 3.980 13 N -0.921 5.921 14 Si 0.972 3.028 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.268 1.268 18 O -0.158 6.158 19 C -0.109 4.109 20 C 0.579 3.421 21 O -0.510 6.510 22 O -0.505 6.505 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.191 0.809 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.025 0.975 32 H 0.271 0.729 33 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.669 -7.547 -6.657 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.063 4.063 3 C -0.224 4.224 4 C 0.005 3.995 5 C -0.111 4.111 6 H 0.151 0.849 7 C -0.200 4.200 8 S -0.077 6.077 9 C -0.049 4.049 10 C -0.579 4.579 11 H 0.076 0.924 12 C -0.181 4.181 13 N -0.560 5.560 14 Si 0.795 3.205 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.193 1.193 18 O -0.054 6.054 19 C -0.159 4.159 20 C 0.424 3.576 21 O -0.402 6.402 22 O -0.319 6.319 23 H 0.110 0.890 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.208 0.792 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -15.608 -8.073 -5.929 18.545 hybrid contribution 0.917 0.404 -0.205 1.023 sum -14.691 -7.668 -6.134 17.671 Atomic orbital electron populations 1.20564 0.85833 1.04491 1.04137 1.21003 0.98820 0.89945 0.96579 1.21811 0.89668 1.01714 1.09203 1.22153 0.96332 0.80325 1.00682 1.21708 0.91905 1.00203 0.97274 0.84931 1.22039 0.99666 1.02893 0.95407 1.86963 1.33377 1.53550 1.33802 1.20795 0.91753 0.92587 0.99783 1.20935 1.09883 1.18598 1.08463 0.92357 1.25811 0.98637 0.94102 0.99575 1.70024 1.29258 1.20272 1.36434 0.85395 0.77915 0.78370 0.78784 1.19348 1.19963 1.19259 1.84106 1.28384 1.22221 1.70709 1.20812 0.82148 0.92697 1.20244 1.18685 0.83095 0.83606 0.72178 1.90940 1.17473 1.83471 1.48338 1.84679 1.41403 1.20919 1.84915 0.88990 0.90549 0.88702 0.79195 0.88904 0.91880 0.91996 0.96017 0.95667 0.91995 0.69807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.82 71.24 0.70 -0.98 16 2 C -0.06 -1.49 6.20 -19.73 -0.12 -1.61 16 3 C -0.20 -4.88 10.70 22.07 0.24 -4.65 16 4 C 0.06 1.76 5.83 24.98 0.15 1.91 16 5 C 0.02 0.54 3.25 29.85 0.10 0.64 16 6 H 0.13 3.75 8.10 -2.39 -0.02 3.73 16 7 C -0.14 -4.16 9.08 71.98 0.65 -3.51 16 8 S -0.31 -13.29 21.05 -56.49 -1.19 -14.48 16 9 C 0.10 5.03 5.39 71.24 0.38 5.42 16 10 C -0.54 -30.47 9.13 25.60 0.23 -30.23 16 11 H 0.06 3.31 7.71 -2.91 -0.02 3.29 16 12 C 0.02 1.11 5.46 84.66 0.46 1.57 16 13 N -0.92 -52.82 13.29 21.45 0.28 -52.53 16 14 Si 0.97 43.18 29.54 68.60 2.03 45.20 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 18 O -0.16 -5.16 10.67 -4.95 -0.05 -5.21 16 19 C -0.11 -3.10 7.18 24.04 0.17 -2.92 16 20 C 0.58 14.69 8.30 69.96 0.58 15.27 16 21 O -0.51 -13.42 15.53 19.42 0.30 -13.12 16 22 O -0.50 -10.51 13.44 -56.73 -0.76 -11.27 16 23 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 1.54 6.45 -2.38 -0.02 1.52 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.03 6.92 -2.39 -0.02 2.01 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.03 1.34 7.14 -2.39 -0.02 1.32 16 32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.44 3.90 9.11 -74.06 -0.67 3.23 16 Total: -1.00 -67.94 307.68 4.61 -63.33 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.46 Total: 7.18 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 3.54 Total: -19.09 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.28 Total: -52.53 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.51 Total: -29.60 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -13.29 SS G_CDS: -1.19 Total: -14.48 kcal Total: -67.94 4.61 -63.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600142252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.604 kcal (2) G-P(sol) polarization free energy of solvation -67.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds