Wall clock time and date at job start Mon Mar 30 2020 00:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47522 * 2 1 4 4 C 1.50694 * 109.47301 * 239.99923 * 2 1 3 5 5 H 1.08009 * 120.00179 * 240.00164 * 4 2 1 6 6 C 1.37874 * 120.00355 * 60.00248 * 4 2 1 7 7 N 1.31515 * 119.99836 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00554 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47251 * 89.99714 * 8 6 4 10 10 H 1.48502 * 109.47060 * 209.99885 * 8 6 4 11 11 H 1.48502 * 109.46701 * 329.99480 * 8 6 4 12 12 N 1.46503 * 109.47112 * 119.99929 * 2 1 3 13 13 C 1.34776 * 119.99626 * 274.99867 * 12 2 1 14 14 O 1.21595 * 120.00542 * 0.02562 * 13 12 2 15 15 C 1.47517 * 119.99780 * 179.97438 * 13 12 2 16 16 C 1.36870 * 122.55387 * 180.02562 * 15 13 12 17 17 S 1.71035 * 108.89455 * 180.02562 * 16 15 13 18 18 C 1.75989 * 90.57242 * 359.97438 * 17 16 15 19 19 C 1.47365 * 125.22481 * 179.97438 * 18 17 16 20 20 O 1.21509 * 119.99868 * 180.02562 * 19 18 17 21 21 O 1.34786 * 119.99951 * 0.02922 * 19 18 17 22 22 N 1.29926 * 109.54852 * 359.97438 * 18 17 16 23 23 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47312 * 300.00271 * 1 2 3 25 25 H 1.09000 * 109.47177 * 60.00188 * 1 2 3 26 26 H 0.97003 * 120.00445 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00390 * 95.00408 * 12 2 1 28 28 H 1.08007 * 125.55249 * 0.02562 * 16 15 13 29 29 H 0.96704 * 117.00313 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8574 1.1615 2.4118 15 6 2.6381 -0.7137 3.5618 16 6 2.7883 -0.0824 4.7669 17 16 3.3757 -1.2083 5.9125 18 6 3.3837 -2.4745 4.6903 19 6 3.8014 -3.8698 4.9146 20 8 3.7693 -4.6682 3.9992 21 8 4.2190 -4.2603 6.1351 22 7 2.9648 -1.9902 3.5598 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7082 1.1608 -3.4845 27 1 2.2490 -1.6317 1.1527 28 1 2.5713 0.9574 4.9625 29 1 4.4826 -5.1855 6.2338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061875.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:53 Heat of formation + Delta-G solvation = -78.318613 kcal Electronic energy + Delta-G solvation = -17684.308303 eV Core-core repulsion = 14506.724671 eV Total energy + Delta-G solvation = -3177.583632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.74249 -39.90596 -38.11635 -36.40765 -34.86007 -32.37408 -31.01907 -29.04552 -27.02691 -25.25686 -24.47215 -21.54345 -20.26452 -19.76722 -19.00609 -17.95904 -17.06058 -16.96355 -16.26951 -15.65318 -15.18122 -14.86329 -14.62426 -14.12432 -13.54616 -13.47982 -13.13111 -12.38807 -12.17422 -11.96973 -11.68072 -11.28612 -11.09108 -10.92993 -10.75222 -10.33228 -10.21188 -10.16328 -10.04551 -9.39957 -9.19314 -9.02786 -8.54250 -7.94601 -6.10374 -4.19091 -0.16669 0.80367 1.24023 1.53447 2.20257 2.51704 3.28167 3.34389 3.38030 3.79776 3.93635 4.34635 4.47944 4.74920 5.03792 5.18489 5.22641 5.76178 5.99386 6.82449 6.95884 7.06169 7.13718 7.38915 7.46967 7.57066 7.71916 7.91362 8.14479 8.62343 8.75958 9.02752 9.47829 10.95784 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.025053 B = 0.004693 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.355343 B = 5964.761377 C = 6858.557783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.683 5.683 13 C 0.574 3.426 14 O -0.546 6.546 15 C 0.021 3.979 16 C -0.198 4.198 17 S 0.251 5.749 18 C -0.017 4.017 19 C 0.566 3.434 20 O -0.469 6.469 21 O -0.508 6.508 22 N -0.363 5.363 23 H 0.028 0.972 24 H 0.015 0.985 25 H 0.092 0.908 26 H 0.264 0.736 27 H 0.400 0.600 28 H 0.201 0.799 29 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -6.716 19.377 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.329 5.329 13 C 0.355 3.645 14 O -0.425 6.425 15 C -0.119 4.119 16 C -0.341 4.341 17 S 0.506 5.494 18 C -0.290 4.290 19 C 0.404 3.596 20 O -0.354 6.354 21 O -0.321 6.321 22 N -0.082 5.082 23 H 0.047 0.953 24 H 0.034 0.966 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.234 0.766 28 H 0.218 0.782 29 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 5.316 -5.938 19.515 21.080 hybrid contribution 0.228 -1.022 -1.587 1.901 sum 5.544 -6.960 17.928 20.015 Atomic orbital electron populations 1.22089 0.98133 0.99381 1.01033 1.18870 0.91261 0.94034 0.79703 0.93050 1.21232 1.32482 1.13299 0.90173 0.91845 1.24876 0.94792 0.94937 0.99046 1.69900 1.35940 1.22480 1.23906 0.86419 0.79283 0.79249 0.82015 1.20489 1.21075 1.19776 1.46489 1.62477 1.14292 1.09656 1.17087 0.79257 0.86077 0.82073 1.90774 1.52403 1.14827 1.84506 1.21079 1.06010 0.88051 0.96804 1.27522 1.02805 1.07372 0.96412 1.83849 1.54168 0.99082 1.12321 1.25564 1.12832 0.97303 0.93324 1.18868 0.74612 0.85566 0.80577 1.91002 1.48477 1.52503 1.43374 1.84472 1.77981 1.37070 1.32608 1.66378 1.06765 1.11324 1.23772 0.95264 0.96554 0.88903 0.92566 0.76580 0.78197 0.71404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.26 37.15 0.34 -3.42 15 2 C 0.26 6.91 2.56 -69.09 -0.18 6.73 15 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 15 4 C -0.53 -14.67 8.73 -34.44 -0.30 -14.97 15 5 H 0.06 1.70 7.74 -52.48 -0.41 1.29 15 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 15 7 N -0.88 -25.21 11.32 55.43 0.63 -24.59 15 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 15 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 12 N -0.68 -15.52 5.07 -55.98 -0.28 -15.80 15 13 C 0.57 12.19 7.77 -12.48 -0.10 12.10 15 14 O -0.55 -12.95 16.35 5.28 0.09 -12.86 15 15 C 0.02 0.35 6.69 -84.61 -0.57 -0.22 15 16 C -0.20 -2.49 10.66 30.24 0.32 -2.17 15 17 S 0.25 2.32 23.02 -107.50 -2.47 -0.15 15 18 C -0.02 -0.22 7.43 -14.65 -0.11 -0.32 15 19 C 0.57 6.58 8.33 34.44 0.29 6.86 15 20 O -0.47 -7.11 17.85 -19.27 -0.34 -7.46 15 21 O -0.51 -3.45 13.29 -40.73 -0.54 -3.99 15 22 N -0.36 -5.94 9.96 -7.97 -0.08 -6.02 15 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 25 H 0.09 2.54 6.07 -51.93 -0.32 2.22 15 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 27 H 0.40 8.60 8.03 -40.82 -0.33 8.27 15 28 H 0.20 2.18 8.03 -52.48 -0.42 1.76 15 29 H 0.43 0.80 9.11 45.56 0.42 1.22 15 LS Contribution 285.59 15.07 4.30 4.30 Total: -1.00 -33.86 285.59 -5.54 -39.40 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -1.43 Total: 4.65 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.39 Total: 6.33 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.26 Total: -46.41 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.80 Total: -24.31 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.47 Total: -0.15 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.86 -5.54 -39.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061875.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.916 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds