Wall clock time and date at job start Mon Mar 30 2020 00:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48491 * 109.47553 * 270.00285 * 3 2 1 5 5 H 1.48507 * 109.47013 * 30.00489 * 3 2 1 6 6 H 1.48508 * 109.47174 * 149.99893 * 3 2 1 7 7 C 1.38806 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00068 * 204.28579 * 7 2 1 9 9 N 1.36941 * 120.00339 * 24.28478 * 7 2 1 10 10 C 1.46498 * 119.99652 * 7.11551 * 9 7 2 11 11 C 1.50706 * 109.47080 * 271.95862 * 10 9 7 12 12 O 1.20827 * 119.99614 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99936 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00002 * 187.11490 * 9 7 2 15 15 C 1.50702 * 109.46906 * 90.00421 * 14 9 7 16 16 N 1.31874 * 119.62304 * 269.97272 * 15 14 9 17 17 C 1.31854 * 121.73945 * 179.73193 * 16 15 14 18 18 C 1.38235 * 120.78490 * 0.58236 * 17 16 15 19 19 C 1.38596 * 119.18014 * 359.43107 * 18 17 16 20 20 C 1.38297 * 119.62820 * 90.00012 * 15 14 9 21 21 Cl 1.73601 * 120.43613 * 359.94875 * 20 15 14 22 22 H 0.96998 * 119.99913 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47319 * 31.95500 * 10 9 7 24 24 H 1.08997 * 109.47358 * 151.95986 * 10 9 7 25 25 H 0.96706 * 116.99764 * 180.02562 * 13 11 10 26 26 H 1.08993 * 109.46923 * 329.99724 * 14 9 7 27 27 H 1.09002 * 109.46708 * 209.99850 * 14 9 7 28 28 H 1.07999 * 119.60483 * 180.31416 * 17 16 15 29 29 H 1.08004 * 120.40446 * 179.70691 * 18 17 16 30 30 H 1.08007 * 120.79688 * 180.29191 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0186 -1.2437 0.3841 9 7 1.4165 -2.3354 -0.4888 10 6 0.1128 -2.2518 -1.1518 11 6 -0.9823 -2.3736 -0.1237 12 8 -0.7024 -2.5152 1.0432 13 8 -2.2686 -2.3247 -0.5042 14 6 2.0850 -3.6314 -0.3481 15 6 1.6663 -4.2743 0.9490 16 7 2.3615 -4.0429 2.0455 17 6 2.0295 -4.5793 3.2033 18 6 0.9375 -5.4206 3.3062 19 6 0.1817 -5.6881 2.1757 20 6 0.5578 -5.1009 0.9758 21 17 -0.3517 -5.3994 -0.4724 22 1 -0.4850 0.8400 0.0004 23 1 0.0260 -1.2930 -1.6631 24 1 0.0216 -3.0601 -1.8772 25 1 -2.9356 -2.4069 0.1912 26 1 3.1651 -3.4850 -0.3492 27 1 1.8050 -4.2768 -1.1806 28 1 2.6205 -4.3622 4.0809 29 1 0.6739 -5.8603 4.2568 30 1 -0.6796 -6.3378 2.2273 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183534.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:07 Heat of formation + Delta-G solvation = -26.336279 kcal Electronic energy + Delta-G solvation = -19391.674312 eV Core-core repulsion = 16214.301097 eV Total energy + Delta-G solvation = -3177.373215 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68712 -38.51114 -36.18544 -35.77310 -34.26241 -32.34717 -31.58339 -30.28754 -27.54018 -26.06707 -23.04128 -22.92393 -21.21698 -19.95566 -17.01121 -16.69898 -16.35402 -16.00113 -15.47815 -15.34883 -14.87039 -14.09779 -13.71335 -13.40506 -13.33374 -12.90946 -12.70182 -11.95395 -11.68421 -11.53991 -11.42904 -11.06453 -11.00719 -10.57267 -10.46305 -10.13443 -9.97688 -9.87706 -9.27501 -9.18851 -8.87971 -8.56449 -8.23388 -7.21281 -5.97345 -3.21742 1.51090 1.70380 2.53678 3.36549 3.43097 3.45394 4.06491 4.17668 4.41037 4.62476 4.91156 5.12537 5.19008 5.29995 5.42347 5.49314 5.79179 6.01366 6.14102 6.35285 6.39970 6.43667 6.61700 6.98183 7.06935 7.07557 7.72073 7.98792 8.08414 8.56067 8.98579 9.53028 9.68542 10.04461 11.13808 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.009245 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.019556 B = 3027.966361 C = 3656.953506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.002 4.002 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.549 5.549 10 C 0.186 3.814 11 C 0.486 3.514 12 O -0.514 6.514 13 O -0.545 6.545 14 C 0.178 3.822 15 C 0.152 3.848 16 N -0.455 5.455 17 C 0.102 3.898 18 C -0.186 4.186 19 C -0.069 4.069 20 C -0.072 4.072 21 Cl -0.072 7.072 22 H 0.258 0.742 23 H 0.114 0.886 24 H 0.053 0.947 25 H 0.377 0.623 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.150 0.850 29 H 0.130 0.870 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 -10.483 0.243 10.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.199 4.199 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.368 4.368 8 H 0.106 0.894 9 N -0.267 5.267 10 C 0.058 3.942 11 C 0.326 3.674 12 O -0.400 6.400 13 O -0.355 6.355 14 C 0.051 3.949 15 C 0.010 3.990 16 N -0.165 5.165 17 C -0.056 4.056 18 C -0.207 4.207 19 C -0.095 4.095 20 C -0.102 4.102 21 Cl -0.043 7.043 22 H 0.069 0.931 23 H 0.131 0.869 24 H 0.071 0.929 25 H 0.232 0.768 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.168 0.832 29 H 0.148 0.852 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.365 -9.767 0.043 9.774 hybrid contribution -1.381 0.407 1.091 1.807 sum -1.017 -9.361 1.134 9.484 Atomic orbital electron populations 1.69795 1.05342 1.25959 1.53898 1.24811 0.95283 0.98684 1.01171 0.86051 0.79034 0.82706 0.77666 1.21254 1.22025 1.20329 1.19493 0.96731 0.84223 1.36391 0.89352 1.44652 1.16584 1.01701 1.63740 1.20596 0.80862 1.02173 0.90616 1.24893 0.81348 0.69609 0.91532 1.90511 1.82881 1.46119 1.20493 1.84620 1.18887 1.86998 1.44982 1.20242 0.98543 0.86848 0.89289 1.22640 0.89943 0.88787 0.97617 1.67694 1.30697 1.19882 0.98246 1.22736 0.94530 0.92497 0.95798 1.21861 0.97838 1.02466 0.98531 1.21274 0.98775 0.98277 0.91206 1.21729 0.97046 1.02805 0.88617 1.98322 1.73790 1.94892 1.37296 0.93134 0.86874 0.92946 0.76835 0.90423 0.91447 0.83248 0.85193 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 8.77 55.49 0.49 -25.01 16 2 C 0.00 -0.06 4.94 -17.43 -0.09 -0.14 16 3 Si 0.92 21.69 29.62 -169.99 -5.03 16.65 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.24 -6.39 9.70 -15.06 -0.15 -6.54 16 8 H 0.09 2.36 7.93 -52.48 -0.42 1.95 16 9 N -0.55 -13.26 2.05 -175.98 -0.36 -13.62 16 10 C 0.19 4.36 5.02 -5.19 -0.03 4.33 16 11 C 0.49 11.71 4.55 36.01 0.16 11.88 16 12 O -0.51 -13.90 14.47 -18.75 -0.27 -14.17 16 13 O -0.54 -11.52 13.42 -39.25 -0.53 -12.05 16 14 C 0.18 3.70 5.61 -5.19 -0.03 3.67 16 15 C 0.15 3.17 5.46 -82.55 -0.45 2.72 16 16 N -0.46 -9.56 10.27 -9.45 -0.10 -9.65 16 17 C 0.10 1.78 11.18 -17.54 -0.20 1.59 16 18 C -0.19 -2.90 10.11 -39.45 -0.40 -3.30 16 19 C -0.07 -1.15 9.98 -39.25 -0.39 -1.54 16 20 C -0.07 -1.37 4.84 -39.36 -0.19 -1.56 16 21 Cl -0.07 -1.23 24.35 -51.86 -1.26 -2.49 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.11 2.87 6.32 -51.93 -0.33 2.54 16 24 H 0.05 1.07 7.18 -51.93 -0.37 0.70 16 25 H 0.38 6.60 9.10 45.56 0.41 7.02 16 26 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 27 H 0.07 1.23 6.63 -51.93 -0.34 0.89 16 28 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 30 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 273.34 15.07 4.12 4.12 Total: -1.00 -32.41 273.34 -6.57 -38.97 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -1.87 Total: 6.17 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -1.75 Total: 11.09 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.03 Total: -48.29 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.80 Total: -26.22 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.26 Total: -2.49 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.41 -6.57 -38.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183534.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.638 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds