Wall clock time and date at job start Mon Mar 30 2020 00:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48491 * 109.47553 * 270.00285 * 3 2 1 5 5 H 1.48507 * 109.47013 * 30.00489 * 3 2 1 6 6 H 1.48508 * 109.47174 * 149.99893 * 3 2 1 7 7 C 1.38806 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00068 * 204.28579 * 7 2 1 9 9 N 1.36941 * 120.00339 * 24.28478 * 7 2 1 10 10 C 1.46498 * 119.99652 * 7.11551 * 9 7 2 11 11 C 1.50706 * 109.47080 * 271.95862 * 10 9 7 12 12 O 1.20827 * 119.99614 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99936 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00002 * 187.11490 * 9 7 2 15 15 C 1.50702 * 109.46906 * 90.00421 * 14 9 7 16 16 N 1.31874 * 119.62304 * 269.97272 * 15 14 9 17 17 C 1.31854 * 121.73945 * 179.73193 * 16 15 14 18 18 C 1.38235 * 120.78490 * 0.58236 * 17 16 15 19 19 C 1.38596 * 119.18014 * 359.43107 * 18 17 16 20 20 C 1.38297 * 119.62820 * 90.00012 * 15 14 9 21 21 Cl 1.73601 * 120.43613 * 359.94875 * 20 15 14 22 22 H 0.96998 * 119.99913 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47319 * 31.95500 * 10 9 7 24 24 H 1.08997 * 109.47358 * 151.95986 * 10 9 7 25 25 H 0.96706 * 116.99764 * 180.02562 * 13 11 10 26 26 H 1.08993 * 109.46923 * 329.99724 * 14 9 7 27 27 H 1.09002 * 109.46708 * 209.99850 * 14 9 7 28 28 H 1.07999 * 119.60483 * 180.31416 * 17 16 15 29 29 H 1.08004 * 120.40446 * 179.70691 * 18 17 16 30 30 H 1.08007 * 120.79688 * 180.29191 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0186 -1.2437 0.3841 9 7 1.4165 -2.3354 -0.4888 10 6 0.1128 -2.2518 -1.1518 11 6 -0.9823 -2.3736 -0.1237 12 8 -0.7024 -2.5152 1.0432 13 8 -2.2686 -2.3247 -0.5042 14 6 2.0850 -3.6314 -0.3481 15 6 1.6663 -4.2743 0.9490 16 7 2.3615 -4.0429 2.0455 17 6 2.0295 -4.5793 3.2033 18 6 0.9375 -5.4206 3.3062 19 6 0.1817 -5.6881 2.1757 20 6 0.5578 -5.1009 0.9758 21 17 -0.3517 -5.3994 -0.4724 22 1 -0.4850 0.8400 0.0004 23 1 0.0260 -1.2930 -1.6631 24 1 0.0216 -3.0601 -1.8772 25 1 -2.9356 -2.4069 0.1912 26 1 3.1651 -3.4850 -0.3492 27 1 1.8050 -4.2768 -1.1806 28 1 2.6205 -4.3622 4.0809 29 1 0.6739 -5.8603 4.2568 30 1 -0.6796 -6.3378 2.2273 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183534.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:06 Heat of formation + Delta-G solvation = -47.965903 kcal Electronic energy + Delta-G solvation = -19392.612243 eV Core-core repulsion = 16214.301097 eV Total energy + Delta-G solvation = -3178.311146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.11808 -40.31569 -37.64739 -37.45020 -36.10871 -34.01056 -33.08435 -31.91387 -29.32044 -27.80194 -24.71576 -24.36828 -22.79014 -21.75966 -18.84899 -18.44377 -17.85155 -17.43706 -17.23027 -16.98006 -16.49526 -15.95350 -15.38471 -15.25117 -14.76958 -14.44140 -14.07741 -13.57855 -13.37010 -13.13853 -12.96289 -12.83257 -12.72496 -12.33511 -12.15543 -11.93842 -11.83397 -11.70346 -11.04038 -10.63527 -10.54550 -10.31345 -9.66085 -9.09409 -7.98384 -5.24256 0.14440 0.36446 1.15774 1.48663 1.50068 1.58296 2.20620 2.46755 2.82584 2.87067 3.23108 3.59149 3.66875 3.85256 3.95926 4.18758 4.50458 4.58583 4.61846 4.73025 4.91675 5.08245 5.15556 5.19587 5.27717 5.65756 5.73974 6.15487 6.25730 6.99845 7.16850 7.64543 7.85247 8.10344 9.10964 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.009245 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.019556 B = 3027.966361 C = 3656.953506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.304 1.304 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.563 5.563 10 C 0.189 3.811 11 C 0.493 3.507 12 O -0.545 6.545 13 O -0.539 6.539 14 C 0.177 3.823 15 C 0.127 3.873 16 N -0.492 5.492 17 C 0.085 3.915 18 C -0.168 4.168 19 C -0.076 4.076 20 C -0.084 4.084 21 Cl -0.063 7.063 22 H 0.250 0.750 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.395 0.605 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.178 0.822 29 H 0.175 0.825 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -11.817 1.007 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.232 1.232 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.097 0.903 9 N -0.281 5.281 10 C 0.060 3.940 11 C 0.334 3.666 12 O -0.433 6.433 13 O -0.351 6.351 14 C 0.051 3.949 15 C -0.014 4.014 16 N -0.202 5.202 17 C -0.073 4.073 18 C -0.189 4.189 19 C -0.102 4.102 20 C -0.113 4.113 21 Cl -0.034 7.034 22 H 0.059 0.941 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.252 0.748 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.195 0.805 29 H 0.192 0.808 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.008 -11.140 0.797 11.169 hybrid contribution -1.280 0.640 0.916 1.699 sum -1.272 -10.500 1.713 10.715 Atomic orbital electron populations 1.69930 1.06219 1.25624 1.55891 1.25421 0.95976 1.01053 1.01976 0.85181 0.77736 0.79318 0.77663 1.20479 1.23157 1.20074 1.19561 0.96558 0.85579 1.35466 0.90328 1.44534 1.16924 1.02487 1.64181 1.20479 0.80811 1.01901 0.90786 1.24875 0.82031 0.68646 0.91003 1.90488 1.83522 1.47668 1.21659 1.84551 1.18455 1.86470 1.45585 1.20275 0.98045 0.85963 0.90629 1.22430 0.91106 0.90594 0.97263 1.67612 1.32024 1.21152 0.99434 1.23330 0.95735 0.92573 0.95632 1.22357 0.96025 1.00501 0.99968 1.21743 0.99677 0.98154 0.90648 1.21873 0.96661 1.02876 0.89934 1.98315 1.73391 1.94756 1.36948 0.94081 0.89136 0.90334 0.74809 0.90748 0.89440 0.80476 0.80792 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.03 8.77 21.65 0.19 -52.84 16 2 C -0.05 -2.74 4.94 84.86 0.42 -2.32 16 3 Si 0.97 45.24 29.62 68.60 2.03 47.27 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.24 -13.07 9.70 84.03 0.81 -12.26 16 8 H 0.08 4.29 7.93 -2.91 -0.02 4.27 16 9 N -0.56 -27.25 2.05 -710.68 -1.46 -28.70 16 10 C 0.19 8.80 5.02 85.64 0.43 9.23 16 11 C 0.49 23.43 4.55 71.24 0.32 23.75 16 12 O -0.55 -29.16 14.47 21.96 0.32 -28.84 16 13 O -0.54 -22.14 13.42 -51.39 -0.69 -22.83 16 14 C 0.18 7.33 5.61 85.63 0.48 7.81 16 15 C 0.13 5.20 5.46 42.57 0.23 5.43 16 16 N -0.49 -20.29 10.27 -183.80 -1.89 -22.18 16 17 C 0.08 2.77 11.18 84.69 0.95 3.72 16 18 C -0.17 -4.65 10.11 22.35 0.23 -4.43 16 19 C -0.08 -2.31 9.98 22.49 0.22 -2.08 16 20 C -0.08 -3.03 4.84 22.42 0.11 -2.92 16 21 Cl -0.06 -2.04 24.35 -2.72 -0.07 -2.11 16 22 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 23 H 0.09 4.64 6.32 -2.39 -0.02 4.63 16 24 H 0.08 3.15 7.18 -2.39 -0.02 3.13 16 25 H 0.39 13.19 9.10 -74.05 -0.67 12.51 16 26 H 0.07 3.03 8.03 -2.39 -0.02 3.01 16 27 H 0.09 3.14 6.63 -2.39 -0.02 3.12 16 28 H 0.18 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 30 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -69.43 273.34 3.16 -66.27 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.52 Total: 18.05 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 4.21 Total: 25.92 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -3.16 Total: -103.72 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.37 Total: -51.68 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.07 Total: -2.11 kcal Total: -69.43 3.16 -66.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183534.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.304 kcal (2) G-P(sol) polarization free energy of solvation -69.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds