Wall clock time and date at job start Mon Mar 30 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46507 * 109.46853 * 240.00230 * 2 1 3 5 5 C 1.34775 * 119.99876 * 85.00265 * 4 2 1 6 6 O 1.21683 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.46373 * 119.99634 * 179.97438 * 5 4 2 8 8 H 1.08002 * 120.00452 * 0.02562 * 7 5 4 9 9 C 1.40050 * 119.99716 * 179.71971 * 7 5 4 10 10 N 1.30674 * 120.00151 * 0.28083 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 180.27503 * 9 7 5 12 12 H 1.48504 * 109.47118 * 60.00511 * 11 9 7 13 13 H 1.48504 * 109.47036 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47374 * 300.00617 * 11 9 7 15 15 C 1.50702 * 109.47105 * 120.00422 * 2 1 3 16 16 N 1.29391 * 124.70851 * 75.02629 * 15 2 1 17 17 C 1.30913 * 117.46429 * 179.97438 * 16 15 2 18 18 C 1.36748 * 113.93628 * 359.97438 * 17 16 15 19 19 C 1.46501 * 126.17986 * 180.02562 * 18 17 16 20 20 O 1.21617 * 120.00078 * 180.02562 * 19 18 17 21 21 O 1.34871 * 120.00213 * 0.03114 * 19 18 17 22 22 S 1.70925 * 124.70236 * 254.71878 * 15 2 1 23 23 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 24 24 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 25 25 H 1.09003 * 109.46809 * 180.02562 * 1 2 3 26 26 H 0.97000 * 119.99601 * 264.99604 * 4 2 1 27 27 H 0.97005 * 120.00029 * 179.97438 * 10 9 7 28 28 H 1.08003 * 123.02712 * 179.97438 * 17 16 15 29 29 H 0.96699 * 117.00718 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8572 1.1624 -2.4119 7 6 2.6354 -0.7081 -3.5522 8 1 2.8922 -1.7560 -3.5038 9 6 2.7636 -0.0108 -4.7600 10 7 2.4524 1.2570 -4.8187 11 14 3.3796 -0.8931 -6.2870 12 1 2.4619 -2.0135 -6.6153 13 1 3.4248 0.0600 -7.4249 14 1 4.7420 -1.4269 -6.0345 15 6 2.0323 -0.7105 1.2304 16 7 2.0188 -1.9935 1.3974 17 6 2.4924 -2.4606 2.5250 18 6 2.9433 -1.4936 3.3803 19 6 3.5239 -1.7149 4.7071 20 8 3.8895 -0.7677 5.3766 21 8 3.6531 -2.9691 5.1860 22 16 2.7059 0.0663 2.5959 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.2490 -1.6318 -1.1527 27 1 2.5416 1.7400 -5.6552 28 1 2.5240 -3.5146 2.7585 29 1 4.0422 -3.0652 6.0661 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609761082.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:42 Heat of formation + Delta-G solvation = -86.647226 kcal Electronic energy + Delta-G solvation = -17541.728429 eV Core-core repulsion = 14363.783642 eV Total energy + Delta-G solvation = -3177.944787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.46433 -39.63380 -37.52327 -36.31161 -34.42660 -32.45684 -30.81203 -29.59246 -26.31582 -26.09551 -23.35083 -22.48890 -20.55095 -19.23470 -18.54396 -17.95385 -16.95856 -16.81295 -15.99822 -15.43995 -14.88829 -14.69328 -14.37994 -14.07976 -13.62168 -13.28168 -13.08149 -12.41527 -11.91578 -11.79062 -11.74804 -11.68296 -11.22414 -11.11382 -11.05424 -10.84771 -10.50471 -10.29703 -9.72765 -9.64996 -9.06333 -8.89038 -7.73489 -7.67665 -6.24368 -4.69876 -0.01557 0.91273 1.52988 2.09734 2.83842 2.92155 3.14237 3.19261 3.21188 4.00185 4.07223 4.51873 4.70810 4.81964 4.93611 5.17208 5.51371 5.62566 5.85265 5.90661 6.06846 6.12561 6.31384 6.65362 7.39160 7.47932 7.59611 7.83907 7.95993 8.26697 8.97225 9.42773 10.51830 10.69688 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.034963 B = 0.004080 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.646009 B = 6860.608046 C = 7165.457684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.222 3.778 3 H 0.100 0.900 4 N -0.752 5.752 5 C 0.556 3.444 6 O -0.579 6.579 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.088 3.912 10 N -0.766 5.766 11 Si 0.910 3.090 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.268 1.268 15 C 0.074 3.926 16 N -0.478 5.478 17 C 0.140 3.860 18 C -0.328 4.328 19 C 0.571 3.429 20 O -0.516 6.516 21 O -0.507 6.507 22 S 0.247 5.753 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.390 0.610 27 H 0.270 0.730 28 H 0.190 0.810 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 -7.020 15.415 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.112 3.888 3 H 0.117 0.883 4 N -0.409 5.409 5 C 0.361 3.639 6 O -0.462 6.462 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.132 4.132 10 N -0.395 5.395 11 Si 0.734 3.266 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.193 1.193 15 C -0.200 4.200 16 N -0.192 5.192 17 C -0.022 4.022 18 C -0.451 4.451 19 C 0.414 3.586 20 O -0.406 6.406 21 O -0.319 6.319 22 S 0.507 5.493 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.223 0.777 27 H 0.080 0.920 28 H 0.207 0.793 29 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -0.061 -4.841 14.859 15.627 hybrid contribution 0.745 -2.032 0.181 2.172 sum 0.684 -6.872 15.039 16.549 Atomic orbital electron populations 1.22182 0.93967 1.02520 1.02485 1.19232 0.94145 0.95564 0.79833 0.88259 1.46254 1.73212 1.13443 1.07969 1.18266 0.77881 0.86400 0.81356 1.90602 1.55027 1.16335 1.84216 1.20817 1.46710 0.97288 0.92991 0.91319 1.25705 0.93298 0.94505 0.99735 1.70001 1.34815 1.08191 1.26471 0.86404 0.79909 0.79719 0.80564 1.19221 1.20534 1.19273 1.28409 0.97388 0.92926 1.01230 1.66126 1.19475 1.12134 1.21468 1.22741 0.91832 1.01159 0.86489 1.24864 1.20610 0.98900 1.00720 1.19019 0.74598 0.80565 0.84383 1.90964 1.47508 1.42983 1.59190 1.84562 1.77309 1.30242 1.39751 1.84182 1.51724 1.05389 1.07961 0.92907 0.90204 0.92078 0.77705 0.91956 0.79343 0.72393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.47 37.16 0.35 -2.16 15 2 C 0.22 4.08 3.07 -69.08 -0.21 3.87 15 3 H 0.10 1.94 7.57 -51.93 -0.39 1.54 15 4 N -0.75 -16.42 5.06 -56.34 -0.29 -16.71 15 5 C 0.56 15.22 7.71 -12.99 -0.10 15.12 15 6 O -0.58 -17.79 14.68 5.20 0.08 -17.71 15 7 C -0.54 -14.94 9.54 -35.63 -0.34 -15.28 15 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 15 9 C 0.09 2.39 5.50 -17.36 -0.10 2.30 15 10 N -0.77 -22.39 11.83 55.55 0.66 -21.73 15 11 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 15 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 14 H -0.27 -5.71 7.11 56.52 0.40 -5.30 15 15 C 0.07 1.15 6.20 -13.31 -0.08 1.06 15 16 N -0.48 -7.14 10.10 -11.26 -0.11 -7.26 15 17 C 0.14 1.73 11.20 -18.48 -0.21 1.52 15 18 C -0.33 -4.18 6.51 -36.79 -0.24 -4.42 15 19 C 0.57 6.76 8.30 34.06 0.28 7.05 15 20 O -0.52 -7.45 17.75 -19.36 -0.34 -7.79 15 21 O -0.51 -4.10 13.23 -40.96 -0.54 -4.65 15 22 S 0.25 3.32 23.00 -107.50 -2.47 0.85 15 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.39 7.98 8.26 -40.82 -0.34 7.64 15 27 H 0.27 7.17 8.29 -40.82 -0.34 6.83 15 28 H 0.19 1.77 8.06 -52.48 -0.42 1.35 15 29 H 0.42 1.38 9.11 45.56 0.42 1.79 15 LS Contribution 287.61 15.07 4.33 4.33 Total: -1.00 -34.60 287.61 -5.91 -40.51 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -1.55 Total: 6.31 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -0.64 Total: 9.06 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.26 Total: -45.70 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.81 Total: -30.15 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.47 Total: 0.85 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.60 -5.91 -40.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609761082.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.140 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds