Wall clock time and date at job start Mon Mar 30 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46507 * 109.46853 * 240.00230 * 2 1 3 5 5 C 1.34775 * 119.99876 * 85.00265 * 4 2 1 6 6 O 1.21683 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.46373 * 119.99634 * 179.97438 * 5 4 2 8 8 H 1.08002 * 120.00452 * 0.02562 * 7 5 4 9 9 C 1.40050 * 119.99716 * 179.71971 * 7 5 4 10 10 N 1.30674 * 120.00151 * 0.28083 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 180.27503 * 9 7 5 12 12 H 1.48504 * 109.47118 * 60.00511 * 11 9 7 13 13 H 1.48504 * 109.47036 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47374 * 300.00617 * 11 9 7 15 15 C 1.50702 * 109.47105 * 120.00422 * 2 1 3 16 16 N 1.29391 * 124.70851 * 75.02629 * 15 2 1 17 17 C 1.30913 * 117.46429 * 179.97438 * 16 15 2 18 18 C 1.36748 * 113.93628 * 359.97438 * 17 16 15 19 19 C 1.46501 * 126.17986 * 180.02562 * 18 17 16 20 20 O 1.21617 * 120.00078 * 180.02562 * 19 18 17 21 21 O 1.34871 * 120.00213 * 0.03114 * 19 18 17 22 22 S 1.70925 * 124.70236 * 254.71878 * 15 2 1 23 23 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 24 24 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 25 25 H 1.09003 * 109.46809 * 180.02562 * 1 2 3 26 26 H 0.97000 * 119.99601 * 264.99604 * 4 2 1 27 27 H 0.97005 * 120.00029 * 179.97438 * 10 9 7 28 28 H 1.08003 * 123.02712 * 179.97438 * 17 16 15 29 29 H 0.96699 * 117.00718 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8572 1.1624 -2.4119 7 6 2.6354 -0.7081 -3.5522 8 1 2.8922 -1.7560 -3.5038 9 6 2.7636 -0.0108 -4.7600 10 7 2.4524 1.2570 -4.8187 11 14 3.3796 -0.8931 -6.2870 12 1 2.4619 -2.0135 -6.6153 13 1 3.4248 0.0600 -7.4249 14 1 4.7420 -1.4269 -6.0345 15 6 2.0323 -0.7105 1.2304 16 7 2.0188 -1.9935 1.3974 17 6 2.4924 -2.4606 2.5250 18 6 2.9433 -1.4936 3.3803 19 6 3.5239 -1.7149 4.7071 20 8 3.8895 -0.7677 5.3766 21 8 3.6531 -2.9691 5.1860 22 16 2.7059 0.0663 2.5959 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.2490 -1.6318 -1.1527 27 1 2.5416 1.7400 -5.6552 28 1 2.5240 -3.5146 2.7585 29 1 4.0422 -3.0652 6.0661 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609761082.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:42 Heat of formation + Delta-G solvation = -114.213532 kcal Electronic energy + Delta-G solvation = -17542.923794 eV Core-core repulsion = 14363.783642 eV Total energy + Delta-G solvation = -3179.140152 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.44422 -40.71593 -39.39515 -37.13733 -36.14826 -34.53616 -32.26712 -30.99518 -28.20581 -27.41059 -24.44023 -23.76402 -22.08142 -20.63853 -19.89527 -19.17290 -18.41020 -17.87100 -17.43958 -16.92266 -16.32740 -16.13654 -15.72198 -15.38417 -14.91253 -14.63324 -14.54656 -14.29390 -13.53030 -13.29596 -12.91377 -12.73372 -12.70123 -12.68876 -12.61260 -12.36203 -12.16029 -12.04345 -10.91901 -10.86342 -10.74013 -10.17407 -9.85591 -9.56838 -8.28885 -6.85175 -1.08978 -0.15398 0.44953 1.08801 1.41969 1.44598 1.56300 1.83686 2.08839 2.25880 2.46535 2.84103 3.07629 3.61017 3.67614 3.86929 4.21932 4.26119 4.33953 4.67914 4.86130 4.93219 5.23296 5.33038 5.42535 5.87177 6.10967 6.24115 6.45028 6.85219 6.87521 7.49050 8.46748 8.66181 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.034963 B = 0.004080 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.646009 B = 6860.608046 C = 7165.457684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.221 3.779 3 H 0.081 0.919 4 N -0.742 5.742 5 C 0.545 3.455 6 O -0.623 6.623 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.031 3.969 10 N -0.817 5.817 11 Si 0.995 3.005 12 H -0.255 1.255 13 H -0.274 1.274 14 H -0.256 1.256 15 C 0.053 3.947 16 N -0.488 5.488 17 C 0.143 3.857 18 C -0.328 4.328 19 C 0.580 3.420 20 O -0.546 6.546 21 O -0.491 6.491 22 S 0.269 5.731 23 H 0.084 0.916 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.397 0.603 27 H 0.275 0.725 28 H 0.222 0.778 29 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -9.264 16.317 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.112 3.888 3 H 0.099 0.901 4 N -0.398 5.398 5 C 0.349 3.651 6 O -0.510 6.510 7 C -0.608 4.608 8 H 0.102 0.898 9 C -0.184 4.184 10 N -0.447 5.447 11 Si 0.815 3.185 12 H -0.179 1.179 13 H -0.198 1.198 14 H -0.180 1.180 15 C -0.220 4.220 16 N -0.203 5.203 17 C -0.018 4.018 18 C -0.450 4.450 19 C 0.424 3.576 20 O -0.439 6.439 21 O -0.305 6.305 22 S 0.529 5.471 23 H 0.103 0.897 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.231 0.769 27 H 0.085 0.915 28 H 0.238 0.762 29 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 0.592 -7.146 15.824 17.373 hybrid contribution 0.560 -1.396 0.103 1.507 sum 1.151 -8.542 15.927 18.110 Atomic orbital electron populations 1.22066 0.92839 1.02880 1.02468 1.19184 0.95137 0.94687 0.79823 0.90128 1.45876 1.72284 1.13554 1.08081 1.18508 0.77581 0.86035 0.82950 1.90559 1.56890 1.18160 1.85404 1.21355 1.47279 0.98260 0.93929 0.89763 1.26906 0.92793 0.95176 1.03546 1.70157 1.36233 1.10377 1.27884 0.85104 0.79650 0.78411 0.75351 1.17931 1.19830 1.18048 1.27721 0.99541 0.93521 1.01241 1.66117 1.19612 1.11841 1.22738 1.23151 0.90898 1.02433 0.85313 1.25094 1.20113 0.98446 1.01366 1.18822 0.73875 0.81192 0.83735 1.90967 1.48855 1.44187 1.59852 1.84511 1.76833 1.27759 1.41438 1.84132 1.50620 1.05657 1.06676 0.89745 0.93337 0.91424 0.76855 0.91480 0.76154 0.69672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.47 71.98 0.68 -4.11 15 2 C 0.22 8.25 3.07 44.24 0.14 8.38 15 3 H 0.08 3.30 7.57 -2.39 -0.02 3.28 15 4 N -0.74 -33.12 5.06 -450.40 -2.28 -35.40 15 5 C 0.54 30.79 7.71 86.36 0.67 31.46 15 6 O -0.62 -40.09 14.68 -4.29 -0.06 -40.15 15 7 C -0.57 -32.03 9.54 24.83 0.24 -31.79 15 8 H 0.08 4.28 7.85 -2.91 -0.02 4.26 15 9 C 0.03 1.73 5.50 85.30 0.47 2.20 15 10 N -0.82 -49.06 11.83 21.84 0.26 -48.81 15 11 Si 1.00 40.51 29.56 68.60 2.03 42.54 15 12 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 13 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 14 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 15 C 0.05 1.59 6.20 88.47 0.55 2.14 15 16 N -0.49 -13.76 10.10 -189.54 -1.92 -15.68 15 17 C 0.14 3.14 11.20 84.48 0.95 4.09 15 18 C -0.33 -7.55 6.51 24.08 0.16 -7.39 15 19 C 0.58 12.15 8.30 69.98 0.58 12.73 15 20 O -0.55 -14.66 17.75 19.45 0.35 -14.32 15 21 O -0.49 -6.14 13.23 -57.85 -0.77 -6.91 15 22 S 0.27 6.93 23.00 -56.49 -1.30 5.63 15 23 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 24 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 25 H 0.07 2.15 8.14 -2.39 -0.02 2.14 15 26 H 0.40 16.34 8.26 -92.71 -0.77 15.57 15 27 H 0.28 15.00 8.29 -92.70 -0.77 14.23 15 28 H 0.22 3.26 8.06 -2.91 -0.02 3.24 15 29 H 0.44 1.24 9.11 -74.06 -0.67 0.57 15 Total: -1.00 -76.77 287.61 0.52 -76.25 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.21 Total: 19.13 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 4.42 Total: 17.72 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -3.94 Total: -99.89 kcal Atomic # 8 Polarization: -60.90 SS G_CDS: -0.48 Total: -61.38 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 6.93 SS G_CDS: -1.30 Total: 5.63 kcal Total: -76.77 0.52 -76.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609761082.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.964 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds