Wall clock time and date at job start Mon Mar 30 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35734 * 117.00370 * 2 1 4 4 C 1.41762 * 126.77440 * 180.02562 * 3 2 1 5 5 C 1.36840 * 103.80371 * 179.73316 * 4 3 2 6 6 C 1.47318 * 126.89264 * 180.25783 * 5 4 3 7 7 O 1.21645 * 120.00501 * 5.55241 * 6 5 4 8 8 N 1.34785 * 119.99738 * 185.55338 * 6 5 4 9 9 C 1.36687 * 119.99910 * 185.44732 * 8 6 5 10 10 H 1.08006 * 120.00043 * 346.14725 * 9 8 6 11 11 C 1.39158 * 120.00222 * 166.14559 * 9 8 6 12 12 N 1.31296 * 119.99554 * 332.59369 * 11 9 8 13 13 Si 1.86797 * 120.00094 * 152.59109 * 11 9 8 14 14 H 1.48497 * 109.47305 * 94.98730 * 13 11 9 15 15 H 1.48497 * 109.47074 * 214.98933 * 13 11 9 16 16 H 1.48503 * 109.46993 * 334.98644 * 13 11 9 17 17 C 1.46493 * 119.99989 * 5.44211 * 8 6 5 18 18 C 1.50703 * 109.47476 * 276.28500 * 17 8 6 19 19 O 1.20831 * 119.99556 * 359.97438 * 18 17 8 20 20 O 1.34228 * 120.00081 * 180.02562 * 18 17 8 21 21 O 1.34693 * 106.20903 * 0.22713 * 5 4 3 22 22 N 1.20875 * 111.61870 * 359.97438 * 21 5 4 23 23 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46791 * 300.00037 * 1 2 3 25 25 H 1.08994 * 109.47156 * 59.99800 * 1 2 3 26 26 H 1.07993 * 128.10264 * 359.97438 * 4 3 2 27 27 H 0.97003 * 119.99898 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47128 * 36.28787 * 17 8 6 29 29 H 1.09005 * 109.47000 * 156.28439 * 17 8 6 30 30 H 0.96699 * 116.99955 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4423 1.4499 -0.0005 5 6 3.5386 2.8149 -0.0065 6 6 4.7760 3.6142 -0.0148 7 8 5.8555 3.0631 -0.1189 8 7 4.7122 4.9562 0.0930 9 6 5.8486 5.7063 -0.0263 10 1 6.8170 5.2301 0.0178 11 6 5.7579 7.0834 -0.2046 12 7 4.6983 7.6024 -0.7805 13 14 7.1437 8.1936 0.3756 14 1 8.0672 8.4647 -0.7553 15 1 6.5778 9.4742 0.8704 16 1 7.8877 7.5244 1.4728 17 6 3.4248 5.6110 0.3378 18 6 2.6997 5.7985 -0.9699 19 8 3.2067 5.4240 -2.0008 20 8 1.4912 6.3824 -0.9896 21 8 2.2748 3.2810 -0.0039 22 7 1.4682 2.3807 0.0022 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 4.2433 0.7256 -0.0006 27 1 4.6352 8.5623 -0.9051 28 1 2.8223 4.9909 1.0017 29 1 3.5938 6.5826 0.8022 30 1 1.0653 6.4811 -1.8521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610279042.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:02 Heat of formation + Delta-G solvation = -71.036632 kcal Electronic energy + Delta-G solvation = -21425.800768 eV Core-core repulsion = 17805.780036 eV Total energy + Delta-G solvation = -3620.020732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.44492 -39.50199 -38.66683 -38.18902 -35.44373 -34.69885 -32.73331 -32.25653 -31.04437 -27.90942 -27.56325 -25.63946 -23.03294 -22.59119 -21.20645 -20.24208 -17.92934 -17.59935 -17.20147 -16.98148 -16.56945 -15.73514 -15.55844 -15.32052 -15.17880 -14.54188 -14.39260 -14.24084 -13.43532 -13.22424 -12.88977 -12.17651 -12.09423 -11.90613 -11.80801 -11.66707 -11.09690 -11.00899 -10.65921 -10.51128 -10.43997 -9.82301 -9.27841 -9.22865 -9.07301 -8.98520 -8.23841 -6.80217 -4.09031 1.35728 2.49906 2.90378 3.02068 3.11555 3.18541 3.30952 3.48042 3.69287 3.92660 4.12510 4.41197 4.56963 4.83380 5.08671 5.13842 5.22880 5.44175 5.48801 5.73647 5.85280 6.15044 6.27731 6.37333 7.13397 7.24232 7.45403 7.62745 8.04080 8.47655 8.75371 8.88290 9.02298 9.49845 10.26600 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.006469 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.194761 B = 4327.187039 C = 5021.492944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.285 6.285 3 C 0.204 3.796 4 C -0.198 4.198 5 C -0.010 4.010 6 C 0.506 3.494 7 O -0.555 6.555 8 N -0.391 5.391 9 C -0.307 4.307 10 H 0.121 0.879 11 C 0.036 3.964 12 N -0.847 5.847 13 Si 0.932 3.068 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.262 1.262 17 C 0.131 3.869 18 C 0.497 3.503 19 O -0.503 6.503 20 O -0.528 6.528 21 O 0.095 5.905 22 N -0.412 5.412 23 H 0.102 0.898 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.182 0.818 27 H 0.279 0.721 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 -4.167 3.377 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.192 6.192 3 C 0.007 3.993 4 C -0.222 4.222 5 C -0.076 4.076 6 C 0.294 3.706 7 O -0.440 6.440 8 N -0.107 5.107 9 C -0.434 4.434 10 H 0.138 0.862 11 C -0.171 4.171 12 N -0.484 5.484 13 Si 0.757 3.243 14 H -0.200 1.200 15 H -0.203 1.203 16 H -0.186 1.186 17 C 0.005 3.995 18 C 0.337 3.663 19 O -0.389 6.389 20 O -0.339 6.339 21 O 0.035 5.965 22 N -0.141 5.141 23 H 0.120 0.880 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.199 0.801 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.151 0.849 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -8.585 -4.252 3.372 10.156 hybrid contribution 0.452 0.375 -0.654 0.879 sum -8.133 -3.877 2.718 9.410 Atomic orbital electron populations 1.23006 0.77380 1.03595 1.02279 1.86175 1.22167 1.21080 1.89755 1.21841 0.90777 0.85569 1.01094 1.21931 0.93731 0.95054 1.11468 1.24782 0.86628 0.94130 1.02069 1.16207 0.84738 0.82132 0.87498 1.90706 1.26208 1.70063 1.56982 1.43438 1.06602 1.03799 1.56889 1.19890 0.86562 0.88609 1.48305 0.86182 1.25455 0.98921 0.97842 0.94904 1.69919 1.30552 1.14149 1.33742 0.85826 0.80221 0.78599 0.79690 1.19975 1.20314 1.18648 1.20952 0.84421 1.02096 0.92027 1.23383 0.77745 0.72624 0.92532 1.90629 1.65671 1.47570 1.34999 1.84488 1.34031 1.75548 1.39835 1.85030 1.12669 1.29450 1.69327 1.73887 1.16772 0.96525 1.26869 0.88012 0.92376 0.92421 0.80070 0.91032 0.89116 0.84924 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.73 101.05 1.08 1.45 16 2 O -0.28 -4.42 10.57 -18.91 -0.20 -4.62 16 3 C 0.20 3.71 7.99 -16.74 -0.13 3.58 16 4 C -0.20 -3.81 10.98 -38.74 -0.43 -4.24 16 5 C -0.01 -0.22 6.74 -36.40 -0.25 -0.46 16 6 C 0.51 12.56 7.39 -12.56 -0.09 12.47 16 7 O -0.56 -15.07 16.53 5.24 0.09 -14.99 16 8 N -0.39 -9.68 2.17 -117.37 -0.26 -9.94 16 9 C -0.31 -7.93 9.35 -15.05 -0.14 -8.07 16 10 H 0.12 3.21 7.35 -52.48 -0.39 2.82 16 11 C 0.04 0.88 4.74 -17.44 -0.08 0.79 16 12 N -0.85 -20.77 9.64 55.51 0.54 -20.24 16 13 Si 0.93 18.67 29.63 -169.99 -5.04 13.63 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 16 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 17 C 0.13 2.84 4.79 -5.20 -0.02 2.82 16 18 C 0.50 11.07 4.96 36.01 0.18 11.25 16 19 O -0.50 -13.10 16.85 -18.75 -0.32 -13.41 16 20 O -0.53 -9.64 13.42 -39.25 -0.53 -10.17 16 21 O 0.09 1.93 7.04 15.41 0.11 2.04 16 22 N -0.41 -7.84 11.50 30.48 0.35 -7.49 16 23 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.18 3.15 8.06 -52.49 -0.42 2.73 16 27 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 28 H 0.09 1.73 6.08 -51.93 -0.32 1.42 16 29 H 0.13 2.85 6.32 -51.93 -0.33 2.52 16 30 H 0.39 5.57 9.10 45.56 0.41 5.98 16 LS Contribution 276.00 15.07 4.16 4.16 Total: -1.00 -31.67 276.00 -2.42 -34.09 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -1.44 Total: 7.35 kcal Atomic # 6 Polarization: 19.47 SS G_CDS: 0.12 Total: 19.59 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.63 Total: -37.67 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.85 Total: -41.15 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.04 Total: 13.63 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.67 -2.42 -34.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610279042.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.951 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds