Wall clock time and date at job start Mon Mar 30 2020 01:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35734 * 117.00370 * 2 1 4 4 C 1.41762 * 126.77440 * 180.02562 * 3 2 1 5 5 C 1.36840 * 103.80371 * 179.73316 * 4 3 2 6 6 C 1.47318 * 126.89264 * 180.25783 * 5 4 3 7 7 O 1.21645 * 120.00501 * 5.55241 * 6 5 4 8 8 N 1.34785 * 119.99738 * 185.55338 * 6 5 4 9 9 C 1.36687 * 119.99910 * 185.44732 * 8 6 5 10 10 H 1.08006 * 120.00043 * 346.14725 * 9 8 6 11 11 C 1.39158 * 120.00222 * 166.14559 * 9 8 6 12 12 N 1.31296 * 119.99554 * 332.59369 * 11 9 8 13 13 Si 1.86797 * 120.00094 * 152.59109 * 11 9 8 14 14 H 1.48497 * 109.47305 * 94.98730 * 13 11 9 15 15 H 1.48497 * 109.47074 * 214.98933 * 13 11 9 16 16 H 1.48503 * 109.46993 * 334.98644 * 13 11 9 17 17 C 1.46493 * 119.99989 * 5.44211 * 8 6 5 18 18 C 1.50703 * 109.47476 * 276.28500 * 17 8 6 19 19 O 1.20831 * 119.99556 * 359.97438 * 18 17 8 20 20 O 1.34228 * 120.00081 * 180.02562 * 18 17 8 21 21 O 1.34693 * 106.20903 * 0.22713 * 5 4 3 22 22 N 1.20875 * 111.61870 * 359.97438 * 21 5 4 23 23 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46791 * 300.00037 * 1 2 3 25 25 H 1.08994 * 109.47156 * 59.99800 * 1 2 3 26 26 H 1.07993 * 128.10264 * 359.97438 * 4 3 2 27 27 H 0.97003 * 119.99898 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47128 * 36.28787 * 17 8 6 29 29 H 1.09005 * 109.47000 * 156.28439 * 17 8 6 30 30 H 0.96699 * 116.99955 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4423 1.4499 -0.0005 5 6 3.5386 2.8149 -0.0065 6 6 4.7760 3.6142 -0.0148 7 8 5.8555 3.0631 -0.1189 8 7 4.7122 4.9562 0.0930 9 6 5.8486 5.7063 -0.0263 10 1 6.8170 5.2301 0.0178 11 6 5.7579 7.0834 -0.2046 12 7 4.6983 7.6024 -0.7805 13 14 7.1437 8.1936 0.3756 14 1 8.0672 8.4647 -0.7553 15 1 6.5778 9.4742 0.8704 16 1 7.8877 7.5244 1.4728 17 6 3.4248 5.6110 0.3378 18 6 2.6997 5.7985 -0.9699 19 8 3.2067 5.4240 -2.0008 20 8 1.4912 6.3824 -0.9896 21 8 2.2748 3.2810 -0.0039 22 7 1.4682 2.3807 0.0022 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 4.2433 0.7256 -0.0006 27 1 4.6352 8.5623 -0.9051 28 1 2.8223 4.9909 1.0017 29 1 3.5938 6.5826 0.8022 30 1 1.0653 6.4811 -1.8521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610279042.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:01 Heat of formation + Delta-G solvation = -96.004513 kcal Electronic energy + Delta-G solvation = -21426.883457 eV Core-core repulsion = 17805.780036 eV Total energy + Delta-G solvation = -3621.103421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.97335 -41.27688 -40.02946 -39.88361 -37.22544 -36.48864 -34.27434 -34.07153 -32.65592 -29.68680 -28.60059 -27.45075 -24.64290 -24.15593 -22.89923 -21.79587 -19.61417 -19.23186 -18.91219 -18.68326 -18.00729 -17.44052 -17.31237 -16.64752 -16.50386 -16.25900 -16.07220 -15.73529 -15.27954 -14.86739 -14.56266 -13.83184 -13.67026 -13.42516 -13.13755 -12.88712 -12.70388 -12.51617 -12.45953 -12.18885 -12.08278 -11.65806 -11.05696 -10.99308 -10.84916 -10.43192 -10.09845 -8.63842 -6.03620 -0.28904 1.00843 1.39524 1.48047 1.54629 1.61419 1.68875 1.77215 2.00217 2.23632 2.43152 2.72631 2.98764 3.09502 3.72032 3.81595 4.13492 4.20243 4.26733 4.34446 4.55667 4.60592 4.68255 4.76881 5.35212 5.75409 5.86479 5.89807 6.16218 6.82332 6.91808 7.06531 7.35055 7.62662 8.43021 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.006469 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.194761 B = 4327.187039 C = 5021.492944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.287 6.287 3 C 0.216 3.784 4 C -0.185 4.185 5 C -0.030 4.030 6 C 0.496 3.504 7 O -0.594 6.594 8 N -0.399 5.399 9 C -0.348 4.348 10 H 0.098 0.902 11 C 0.011 3.989 12 N -0.864 5.864 13 Si 1.000 3.000 14 H -0.278 1.278 15 H -0.261 1.261 16 H -0.262 1.262 17 C 0.130 3.870 18 C 0.504 3.496 19 O -0.546 6.546 20 O -0.513 6.513 21 O 0.088 5.912 22 N -0.409 5.409 23 H 0.141 0.859 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.197 0.803 27 H 0.286 0.714 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 -4.186 3.929 11.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.193 6.193 3 C 0.018 3.982 4 C -0.209 4.209 5 C -0.096 4.096 6 C 0.285 3.715 7 O -0.481 6.481 8 N -0.114 5.114 9 C -0.475 4.475 10 H 0.116 0.884 11 C -0.195 4.195 12 N -0.499 5.499 13 Si 0.821 3.179 14 H -0.204 1.204 15 H -0.185 1.185 16 H -0.186 1.186 17 C 0.005 3.995 18 C 0.347 3.653 19 O -0.436 6.436 20 O -0.326 6.326 21 O 0.030 5.970 22 N -0.140 5.140 23 H 0.159 0.841 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.214 0.786 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.152 0.848 30 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -10.080 -4.249 3.927 11.622 hybrid contribution 0.694 0.280 -0.860 1.140 sum -9.386 -3.968 3.067 10.642 Atomic orbital electron populations 1.23408 0.74830 1.06368 1.02491 1.86216 1.24592 1.19309 1.89187 1.21842 0.90418 0.86210 0.99708 1.22219 0.94985 0.94448 1.09259 1.24277 0.86337 0.94569 1.04423 1.16558 0.85420 0.82418 0.87058 1.90651 1.27896 1.70899 1.58652 1.43554 1.07399 1.03961 1.56477 1.19882 0.86490 0.89735 1.51389 0.88387 1.26246 1.01352 0.98117 0.93782 1.69957 1.31862 1.14805 1.33298 0.84847 0.77184 0.77016 0.78822 1.20383 1.18497 1.18603 1.21075 0.83659 1.02414 0.92374 1.23371 0.78249 0.71781 0.91927 1.90614 1.67019 1.49565 1.36357 1.84421 1.32360 1.74341 1.41435 1.85013 1.12140 1.29958 1.69917 1.73860 1.16297 0.96776 1.27066 0.84063 0.91882 0.92448 0.78559 0.90327 0.86732 0.84825 0.72483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.73 113.37 1.22 1.66 16 2 O -0.29 -8.10 10.57 -90.58 -0.96 -9.06 16 3 C 0.22 7.44 7.99 85.75 0.69 8.13 16 4 C -0.19 -6.98 10.98 22.81 0.25 -6.73 16 5 C -0.03 -1.32 6.74 24.33 0.16 -1.15 16 6 C 0.50 25.33 7.39 86.63 0.64 25.97 16 7 O -0.59 -33.50 16.53 -4.17 -0.07 -33.57 16 8 N -0.40 -20.23 2.17 -643.48 -1.40 -21.62 16 9 C -0.35 -18.56 9.35 84.16 0.79 -17.77 16 10 H 0.10 5.52 7.35 -2.91 -0.02 5.50 16 11 C 0.01 0.55 4.74 84.99 0.40 0.95 16 12 N -0.86 -42.05 9.64 21.70 0.21 -41.84 16 13 Si 1.00 38.10 29.63 68.60 2.03 40.13 16 14 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 15 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 16 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 17 C 0.13 5.64 4.79 85.64 0.41 6.05 16 18 C 0.50 22.27 4.96 71.24 0.35 22.62 16 19 O -0.55 -28.66 16.85 21.95 0.37 -28.29 16 20 O -0.51 -17.89 13.42 -51.40 -0.69 -18.58 16 21 O 0.09 3.53 7.04 65.33 0.46 3.99 16 22 N -0.41 -14.91 11.50 -171.93 -1.98 -16.89 16 23 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.20 6.64 8.06 -2.91 -0.02 6.62 16 27 H 0.29 12.85 8.31 -92.71 -0.77 12.08 16 28 H 0.12 4.32 6.08 -2.39 -0.01 4.31 16 29 H 0.13 5.71 6.32 -2.38 -0.02 5.70 16 30 H 0.42 10.88 9.10 -74.06 -0.67 10.21 16 Total: -1.00 -68.82 276.00 3.43 -65.39 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.54 Total: 20.60 kcal Atomic # 6 Polarization: 34.81 SS G_CDS: 4.91 Total: 39.72 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -3.17 Total: -80.35 kcal Atomic # 8 Polarization: -84.61 SS G_CDS: -0.89 Total: -85.50 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -68.82 3.43 -65.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610279042.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.614 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds