Wall clock time and date at job start Mon Mar 30 2020 00:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86806 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47139 * 270.00211 * 3 2 1 5 5 H 1.48507 * 109.47089 * 30.00169 * 3 2 1 6 6 H 1.48495 * 109.47048 * 149.99962 * 3 2 1 7 7 C 1.38947 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00131 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99512 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99708 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00240 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00053 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47300 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99945 * 179.97438 * 13 12 10 15 15 O 1.21583 * 120.00127 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99800 * 180.02562 * 14 13 12 17 17 C 1.39463 * 119.99800 * 180.02562 * 16 14 13 18 18 C 1.35922 * 127.28060 * 179.70697 * 17 16 14 19 19 C 1.37681 * 114.59691 * 180.26147 * 18 17 16 20 20 N 1.30093 * 116.96590 * 359.97438 * 19 18 17 21 21 S 1.69591 * 107.27095 * 0.02562 * 20 19 18 22 22 H 0.97005 * 120.00012 * 359.97438 * 1 2 3 23 23 H 0.96994 * 120.00219 * 359.97438 * 9 7 2 24 24 H 1.08995 * 109.46976 * 59.99871 * 12 10 9 25 25 H 1.09000 * 109.46920 * 299.99839 * 12 10 9 26 26 H 0.97004 * 119.99551 * 0.02562 * 13 12 10 27 27 H 0.96996 * 120.00353 * 359.97438 * 16 14 13 28 28 H 1.07998 * 122.69703 * 0.23866 * 18 17 16 29 29 H 1.08002 * 121.52143 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2032 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1957 -5.9765 -0.0016 14 6 1.7465 -7.2471 -0.0017 15 8 0.5511 -7.4693 -0.0018 16 7 2.6224 -8.2715 -0.0016 17 6 2.1575 -9.5864 -0.0022 18 6 2.9027 -10.7231 -0.0077 19 6 2.1699 -11.8887 -0.0126 20 7 0.8743 -11.7710 -0.0108 21 16 0.5194 -10.1127 -0.0033 22 1 -0.4850 0.8401 0.0004 23 1 0.3534 -2.3906 0.0002 24 1 0.6175 -4.9205 -0.8913 25 1 0.6168 -4.9209 0.8886 26 1 3.1494 -5.7991 -0.0012 27 1 3.5760 -8.0943 -0.0019 28 1 3.9826 -10.7127 -0.0087 29 1 2.6488 -12.8567 -0.0176 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626944503.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:31 Heat of formation + Delta-G solvation = -21.615716 kcal Electronic energy + Delta-G solvation = -17229.572714 eV Core-core repulsion = 14086.740656 eV Total energy + Delta-G solvation = -3142.832058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58939 -38.77460 -38.29257 -35.23560 -34.70277 -33.89719 -31.48654 -30.20988 -27.71086 -25.01922 -24.27056 -21.71508 -20.80883 -19.87136 -18.90870 -18.08275 -17.77095 -16.63529 -16.04882 -15.78283 -15.32997 -14.81949 -14.59560 -14.43601 -14.24779 -13.86198 -13.65003 -13.06791 -12.34946 -12.27421 -11.70591 -11.50006 -11.35820 -11.18399 -10.94257 -10.51860 -10.38547 -9.95051 -9.72088 -9.24790 -8.75794 -8.73996 -8.52308 -8.19148 -6.59279 -4.01843 0.71121 1.20386 1.88625 2.35704 2.37224 2.99131 3.06444 3.17844 3.22673 3.63371 3.93193 4.10133 4.72832 4.75753 5.09016 5.12700 5.35353 5.58442 5.70377 5.81130 5.91879 6.01452 6.36068 6.47279 6.62913 7.38565 7.67675 7.82668 8.20669 8.35360 8.96050 9.29312 9.76361 10.57243 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.071272 B = 0.003084 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.769075 B = 9077.589618 C = 9455.210329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.106 0.894 9 N -0.545 5.545 10 C 0.425 3.575 11 O -0.599 6.599 12 C 0.125 3.875 13 N -0.707 5.707 14 C 0.696 3.304 15 O -0.562 6.562 16 N -0.639 5.639 17 C 0.079 3.921 18 C -0.280 4.280 19 C 0.112 3.888 20 N -0.509 5.509 21 S 0.353 5.647 22 H 0.275 0.725 23 H 0.397 0.603 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.412 0.588 27 H 0.418 0.582 28 H 0.154 0.846 29 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -16.365 0.003 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.124 0.876 9 N -0.179 5.179 10 C 0.211 3.789 11 O -0.486 6.486 12 C -0.002 4.002 13 N -0.364 5.364 14 C 0.395 3.605 15 O -0.438 6.438 16 N -0.286 5.286 17 C -0.151 4.151 18 C -0.319 4.319 19 C -0.084 4.084 20 N -0.333 5.333 21 S 0.499 5.501 22 H 0.085 0.915 23 H 0.231 0.769 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.250 0.750 27 H 0.255 0.745 28 H 0.171 0.829 29 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.366 -16.336 0.009 16.393 hybrid contribution 2.842 1.061 -0.009 3.033 sum 4.208 -15.276 -0.001 15.845 Atomic orbital electron populations 1.69608 1.06042 1.28695 1.48826 1.25343 0.95678 1.00014 0.96568 0.85796 0.79225 0.80369 0.78543 1.20207 1.20728 1.19294 1.19732 0.93488 0.81910 1.48555 0.87607 1.41776 1.09547 1.04425 1.62169 1.19644 0.88270 0.84894 0.86131 1.90500 1.13664 1.86745 1.57682 1.20938 0.90986 0.84538 1.03769 1.44684 1.11978 1.02641 1.77055 1.15868 0.84971 0.80885 0.78732 1.90925 1.13239 1.82763 1.56856 1.41810 1.10598 1.01243 1.74967 1.22759 1.02859 0.87557 1.01897 1.20905 1.02831 0.89546 1.18625 1.22247 0.89479 0.99625 0.97047 1.76667 1.17285 1.12731 1.26649 1.85184 1.02172 0.95879 1.66842 0.91463 0.76940 0.89384 0.89382 0.74963 0.74477 0.82882 0.80603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.12 13.05 55.50 0.72 -22.40 15 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 15 3 Si 0.93 19.93 29.55 -169.99 -5.02 14.91 15 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.31 -8.07 9.68 -14.93 -0.14 -8.21 15 8 H 0.11 2.89 7.16 -52.49 -0.38 2.52 15 9 N -0.54 -12.89 5.29 -10.96 -0.06 -12.94 15 10 C 0.43 9.14 7.85 -10.98 -0.09 9.06 15 11 O -0.60 -14.46 15.24 5.55 0.08 -14.37 15 12 C 0.13 2.10 6.15 -5.19 -0.03 2.07 15 13 N -0.71 -10.45 5.53 -66.42 -0.37 -10.82 15 14 C 0.70 10.05 8.53 -86.92 -0.74 9.31 15 15 O -0.56 -9.59 14.09 5.29 0.07 -9.52 15 16 N -0.64 -7.14 5.43 -15.71 -0.09 -7.23 15 17 C 0.08 0.93 7.28 -14.90 -0.11 0.82 15 18 C -0.28 -2.64 10.26 -40.62 -0.42 -3.06 15 19 C 0.11 1.10 11.26 -18.49 -0.21 0.89 15 20 N -0.51 -6.49 12.08 28.95 0.35 -6.14 15 21 S 0.35 4.74 21.06 -107.50 -2.26 2.48 15 22 H 0.28 6.75 8.31 -40.82 -0.34 6.41 15 23 H 0.40 9.01 7.90 -40.82 -0.32 8.68 15 24 H 0.09 1.41 8.14 -51.93 -0.42 0.98 15 25 H 0.09 1.41 8.14 -51.93 -0.42 0.98 15 26 H 0.41 5.80 7.45 -40.82 -0.30 5.50 15 27 H 0.42 3.30 8.84 -40.82 -0.36 2.94 15 28 H 0.15 1.00 8.06 -52.49 -0.42 0.58 15 29 H 0.18 1.09 8.06 -52.49 -0.42 0.67 15 LS Contribution 281.22 15.07 4.24 4.24 Total: -1.00 -30.96 281.22 -6.35 -37.31 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -2.19 Total: 13.00 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -1.83 Total: 11.47 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.56 Total: -59.52 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.16 Total: -23.89 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -2.26 Total: 2.48 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.96 -6.35 -37.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626944503.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.699 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds