Wall clock time and date at job start Mon Mar 30 2020 00:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86806 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47139 * 270.00211 * 3 2 1 5 5 H 1.48507 * 109.47089 * 30.00169 * 3 2 1 6 6 H 1.48495 * 109.47048 * 149.99962 * 3 2 1 7 7 C 1.38947 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00131 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99512 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99708 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00240 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00053 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47300 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99945 * 179.97438 * 13 12 10 15 15 O 1.21583 * 120.00127 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99800 * 180.02562 * 14 13 12 17 17 C 1.39463 * 119.99800 * 180.02562 * 16 14 13 18 18 C 1.35922 * 127.28060 * 179.70697 * 17 16 14 19 19 C 1.37681 * 114.59691 * 180.26147 * 18 17 16 20 20 N 1.30093 * 116.96590 * 359.97438 * 19 18 17 21 21 S 1.69591 * 107.27095 * 0.02562 * 20 19 18 22 22 H 0.97005 * 120.00012 * 359.97438 * 1 2 3 23 23 H 0.96994 * 120.00219 * 359.97438 * 9 7 2 24 24 H 1.08995 * 109.46976 * 59.99871 * 12 10 9 25 25 H 1.09000 * 109.46920 * 299.99839 * 12 10 9 26 26 H 0.97004 * 119.99551 * 0.02562 * 13 12 10 27 27 H 0.96996 * 120.00353 * 359.97438 * 16 14 13 28 28 H 1.07998 * 122.69703 * 0.23866 * 18 17 16 29 29 H 1.08002 * 121.52143 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2032 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1957 -5.9765 -0.0016 14 6 1.7465 -7.2471 -0.0017 15 8 0.5511 -7.4693 -0.0018 16 7 2.6224 -8.2715 -0.0016 17 6 2.1575 -9.5864 -0.0022 18 6 2.9027 -10.7231 -0.0077 19 6 2.1699 -11.8887 -0.0126 20 7 0.8743 -11.7710 -0.0108 21 16 0.5194 -10.1127 -0.0033 22 1 -0.4850 0.8401 0.0004 23 1 0.3534 -2.3906 0.0002 24 1 0.6175 -4.9205 -0.8913 25 1 0.6168 -4.9209 0.8886 26 1 3.1494 -5.7991 -0.0012 27 1 3.5760 -8.0943 -0.0019 28 1 3.9826 -10.7127 -0.0087 29 1 2.6488 -12.8567 -0.0176 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626944503.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:31 Heat of formation + Delta-G solvation = -46.348114 kcal Electronic energy + Delta-G solvation = -17230.645192 eV Core-core repulsion = 14086.740656 eV Total energy + Delta-G solvation = -3143.904536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.72206 -40.20555 -39.47594 -36.41564 -36.13459 -35.49037 -33.38229 -31.19444 -29.13163 -26.57590 -25.41325 -22.82557 -21.70830 -21.43667 -20.31430 -19.82248 -18.72807 -17.69399 -17.39070 -17.21651 -16.61750 -16.43413 -15.98611 -15.82805 -15.32201 -15.17690 -14.95405 -14.01955 -13.86359 -13.75857 -13.54209 -12.91820 -12.52150 -12.45519 -12.27513 -12.13010 -12.00814 -11.56913 -10.93209 -10.57649 -10.47306 -10.09850 -9.65575 -9.47635 -8.51111 -6.01320 -0.17725 0.30368 0.91091 1.36792 1.37653 1.44903 1.51914 1.56729 1.88900 1.97420 2.27725 2.86215 3.15128 3.16497 4.01821 4.16990 4.34965 4.41161 4.42375 4.64085 4.86124 5.07544 5.18012 5.38602 5.53944 5.81147 5.91465 6.47004 6.62499 7.03330 7.09186 7.43882 7.93482 8.65494 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.071272 B = 0.003084 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.769075 B = 9077.589618 C = 9455.210329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.140 3.860 13 N -0.706 5.706 14 C 0.698 3.302 15 O -0.590 6.590 16 N -0.624 5.624 17 C 0.065 3.935 18 C -0.256 4.256 19 C 0.118 3.882 20 N -0.527 5.527 21 S 0.282 5.718 22 H 0.280 0.720 23 H 0.400 0.600 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.417 0.583 27 H 0.435 0.565 28 H 0.192 0.808 29 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 -17.417 -0.012 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.012 3.988 13 N -0.362 5.362 14 C 0.397 3.603 15 O -0.467 6.467 16 N -0.273 5.273 17 C -0.164 4.164 18 C -0.294 4.294 19 C -0.078 4.078 20 N -0.351 5.351 21 S 0.429 5.571 22 H 0.089 0.911 23 H 0.234 0.766 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.255 0.745 27 H 0.275 0.725 28 H 0.209 0.791 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.883 -17.425 -0.007 17.662 hybrid contribution 2.473 1.188 -0.006 2.743 sum 5.356 -16.237 -0.013 17.098 Atomic orbital electron populations 1.69673 1.06999 1.29645 1.49166 1.26109 0.96504 1.02667 0.95765 0.84875 0.77930 0.76565 0.78664 1.19629 1.19797 1.19419 1.19733 0.92996 0.83503 1.50434 0.89462 1.41825 1.09659 1.04576 1.63263 1.20361 0.88106 0.85853 0.83705 1.90479 1.15113 1.87508 1.58122 1.20719 0.90723 0.82518 1.04889 1.44528 1.11760 1.02441 1.77520 1.15876 0.84921 0.81064 0.78406 1.90926 1.14650 1.83198 1.57946 1.41517 1.10981 1.00429 1.74371 1.22839 1.01903 0.88176 1.03439 1.21324 1.04475 0.88204 1.15404 1.23012 0.88666 1.01542 0.94604 1.76801 1.19073 1.11244 1.27973 1.85366 1.05031 0.97768 1.68973 0.91077 0.76618 0.88235 0.88231 0.74456 0.72456 0.79105 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.40 13.05 21.66 0.28 -47.12 15 2 C -0.01 -0.48 5.50 84.93 0.47 -0.02 15 3 Si 1.00 40.63 29.55 68.60 2.03 42.65 15 4 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 7 C -0.34 -17.94 9.68 84.04 0.81 -17.12 15 8 H 0.09 4.88 7.16 -2.91 -0.02 4.86 15 9 N -0.56 -26.68 5.29 -306.98 -1.62 -28.31 15 10 C 0.43 18.61 7.85 87.66 0.69 19.29 15 11 O -0.62 -30.16 15.24 -3.06 -0.05 -30.20 15 12 C 0.14 4.58 6.15 85.64 0.53 5.11 15 13 N -0.71 -20.09 5.53 -482.31 -2.67 -22.76 15 14 C 0.70 19.43 8.53 179.06 1.53 20.96 15 15 O -0.59 -19.99 14.09 -3.98 -0.06 -20.04 15 16 N -0.62 -12.79 5.43 -321.88 -1.75 -14.54 15 17 C 0.07 1.42 7.28 82.94 0.60 2.02 15 18 C -0.26 -3.90 10.26 21.60 0.22 -3.68 15 19 C 0.12 1.92 11.26 84.82 0.96 2.88 15 20 N -0.53 -12.75 12.08 -62.34 -0.75 -13.50 15 21 S 0.28 7.57 21.06 -56.49 -1.19 6.38 15 22 H 0.28 13.60 8.31 -92.70 -0.77 12.83 15 23 H 0.40 18.37 7.90 -92.71 -0.73 17.64 15 24 H 0.10 3.10 8.14 -2.39 -0.02 3.08 15 25 H 0.10 3.10 8.14 -2.39 -0.02 3.08 15 26 H 0.42 11.23 7.45 -92.70 -0.69 10.54 15 27 H 0.43 5.74 8.84 -92.71 -0.82 4.92 15 28 H 0.19 1.46 8.06 -2.91 -0.02 1.43 15 29 H 0.22 1.65 8.06 -2.91 -0.02 1.63 15 Total: -1.00 -67.28 281.22 -0.97 -68.25 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -1.00 Total: 29.76 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 5.80 Total: 29.44 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -6.51 Total: -126.23 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.10 Total: -50.25 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 7.57 SS G_CDS: -1.19 Total: 6.38 kcal Total: -67.28 -0.97 -68.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626944503.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.904 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds