Wall clock time and date at job start Mon Mar 30 2020 00:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38309 * 119.94872 * 2 1 4 4 C 1.38293 * 120.16688 * 180.02562 * 3 2 1 5 5 C 1.38183 * 120.06459 * 359.97438 * 4 3 2 6 6 Cl 1.73607 * 120.05114 * 179.97438 * 5 4 3 7 7 C 1.39053 * 119.90613 * 359.97438 * 5 4 3 8 8 S 1.76192 * 120.08752 * 179.97438 * 7 5 4 9 9 C 1.81404 * 102.99967 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46946 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46988 * 89.99354 * 16 14 12 18 18 H 1.48498 * 109.47211 * 210.00040 * 16 14 12 19 19 H 1.48506 * 109.46856 * 330.00220 * 16 14 12 20 20 C 1.38088 * 119.94925 * 180.23259 * 2 1 3 21 21 H 1.09003 * 109.47250 * 89.99907 * 1 2 3 22 22 H 1.08992 * 109.47431 * 209.99848 * 1 2 3 23 23 H 1.09004 * 109.46846 * 330.00368 * 1 2 3 24 24 H 1.07996 * 119.91874 * 0.02562 * 3 2 1 25 25 H 1.08001 * 119.96423 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.47124 * 60.00075 * 9 8 7 27 27 H 1.09001 * 109.46975 * 300.00196 * 9 8 7 28 28 H 1.09001 * 109.47194 * 299.99756 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99928 * 10 9 8 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 33 33 H 1.07994 * 120.03749 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1984 0.0000 4 6 3.5804 1.2037 -0.0005 5 6 4.2772 0.0104 -0.0005 6 17 6.0132 0.0174 -0.0019 7 6 3.5859 -1.1961 0.0005 8 16 4.4696 -2.7204 -0.0001 9 6 3.1450 -3.9599 0.0025 10 6 3.7583 -5.3616 0.0028 11 6 2.6412 -6.4071 0.0044 12 6 3.2452 -7.7877 0.0040 13 1 4.3186 -7.9076 0.0024 14 6 2.4276 -8.8979 0.0058 15 7 1.1205 -8.7519 0.0083 16 14 3.1763 -10.6093 0.0061 17 1 3.3765 -11.0617 1.4064 18 1 2.2630 -11.5493 -0.6921 19 1 4.4848 -10.5773 -0.6955 20 6 2.1964 -1.1965 -0.0049 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 1.6553 2.1324 0.0004 25 1 4.1162 2.1414 -0.0010 26 1 2.5273 -3.8334 -0.8866 27 1 2.5300 -3.8326 0.8933 28 1 4.3736 -5.4893 -0.8879 29 1 4.3758 -5.4879 0.8920 30 1 2.0256 -6.2797 0.8948 31 1 2.0240 -6.2807 -0.8851 32 1 0.5454 -9.5330 0.0099 33 1 1.6562 -2.1316 -0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644211370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:06 Heat of formation + Delta-G solvation = -13.319735 kcal Electronic energy + Delta-G solvation = -15196.027147 eV Core-core repulsion = 12565.511586 eV Total energy + Delta-G solvation = -2630.515561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42002 -36.57261 -34.57382 -32.70216 -32.16038 -31.33262 -27.65677 -26.88806 -23.63213 -23.20284 -21.72693 -20.23604 -17.47262 -16.59345 -16.19324 -15.86296 -14.79889 -14.72570 -14.43991 -14.14961 -13.83238 -13.65625 -13.10967 -12.59642 -12.53078 -12.05196 -11.94444 -11.75459 -11.49975 -11.32546 -11.12284 -10.91835 -10.82317 -10.56026 -9.96485 -9.93333 -9.74709 -9.38287 -9.16108 -8.77403 -8.40346 -7.32807 -6.05479 -4.08172 0.93956 1.05306 1.58115 2.10882 2.64074 3.30078 3.36355 3.37088 3.40165 4.42550 4.57207 4.62534 4.99399 5.02445 5.20367 5.30409 5.35924 5.39347 5.42221 5.48107 5.67317 5.79737 5.89087 5.96859 6.01549 6.32364 6.44494 6.59208 6.60645 6.93210 7.57816 7.69029 7.92881 8.34183 8.98015 9.56404 11.05846 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.026372 B = 0.003777 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.470078 B = 7412.286705 C = 8442.704446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.061 4.061 3 C -0.125 4.125 4 C -0.090 4.090 5 C -0.034 4.034 6 Cl -0.059 7.059 7 C -0.069 4.069 8 S -0.099 6.099 9 C -0.104 4.104 10 C -0.095 4.095 11 C 0.029 3.971 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.127 4.127 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.130 0.870 25 H 0.134 0.866 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 21.016 -0.048 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.063 4.063 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.068 4.068 6 Cl -0.030 7.030 7 C -0.183 4.183 8 S 0.149 5.851 9 C -0.252 4.252 10 C -0.135 4.135 11 C -0.010 4.010 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.151 4.151 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.148 0.852 25 H 0.152 0.848 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.720 20.575 -0.053 20.754 hybrid contribution -0.907 -0.688 0.008 1.138 sum 1.814 19.887 -0.045 19.970 Atomic orbital electron populations 1.20841 0.90529 1.03223 1.02781 1.19927 0.96448 0.92598 0.97322 1.20946 0.93192 0.97836 1.02683 1.20928 0.94225 0.96280 0.99571 1.20380 0.84789 0.93399 1.08217 1.98366 1.09257 1.98573 1.96823 1.21882 0.96464 0.97028 1.02910 1.85864 1.14562 0.94382 1.90280 1.24055 0.98593 0.97460 1.05124 1.21487 1.00481 0.89688 1.01810 1.19098 0.92570 0.91881 0.97494 1.21207 0.93092 0.90858 1.50875 0.92497 1.25014 0.94824 0.99361 0.95164 1.69962 1.02779 1.30027 1.50695 0.86567 0.79109 0.84028 0.78169 1.20600 1.21183 1.19788 1.21168 0.91767 0.99102 1.03070 0.90698 0.91029 0.91233 0.85166 0.84785 0.89715 0.89718 0.92146 0.92143 0.96339 0.96332 0.92930 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 36.01 0.36 -0.60 16 2 C -0.06 -0.66 5.88 -104.65 -0.62 -1.27 16 3 C -0.13 -1.22 9.70 -39.54 -0.38 -1.60 16 4 C -0.09 -0.96 9.82 -39.58 -0.39 -1.35 16 5 C -0.03 -0.45 6.34 -39.30 -0.25 -0.70 16 6 Cl -0.06 -0.76 27.84 -51.86 -1.44 -2.20 16 7 C -0.07 -0.98 6.11 -39.01 -0.24 -1.22 16 8 S -0.10 -1.57 20.83 -107.50 -2.24 -3.81 16 9 C -0.10 -1.75 4.33 37.16 0.16 -1.59 16 10 C -0.10 -1.93 5.16 -26.73 -0.14 -2.06 16 11 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 12 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 16 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.13 -1.65 9.02 -39.37 -0.35 -2.00 16 21 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 23 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 24 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 25 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.08 1.37 7.73 -51.92 -0.40 0.97 16 27 H 0.08 1.37 7.76 -51.92 -0.40 0.96 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.14 1.74 5.88 -52.49 -0.31 1.43 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -29.67 309.14 -10.16 -39.83 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -4.45 Total: -3.98 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -2.40 Total: -25.19 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.24 Total: -3.81 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.44 Total: -2.20 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.67 -10.16 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644211370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.506 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds