Wall clock time and date at job start Mon Mar 30 2020 00:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38309 * 119.94872 * 2 1 4 4 C 1.38293 * 120.16688 * 180.02562 * 3 2 1 5 5 C 1.38183 * 120.06459 * 359.97438 * 4 3 2 6 6 Cl 1.73607 * 120.05114 * 179.97438 * 5 4 3 7 7 C 1.39053 * 119.90613 * 359.97438 * 5 4 3 8 8 S 1.76192 * 120.08752 * 179.97438 * 7 5 4 9 9 C 1.81404 * 102.99967 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46946 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46988 * 89.99354 * 16 14 12 18 18 H 1.48498 * 109.47211 * 210.00040 * 16 14 12 19 19 H 1.48506 * 109.46856 * 330.00220 * 16 14 12 20 20 C 1.38088 * 119.94925 * 180.23259 * 2 1 3 21 21 H 1.09003 * 109.47250 * 89.99907 * 1 2 3 22 22 H 1.08992 * 109.47431 * 209.99848 * 1 2 3 23 23 H 1.09004 * 109.46846 * 330.00368 * 1 2 3 24 24 H 1.07996 * 119.91874 * 0.02562 * 3 2 1 25 25 H 1.08001 * 119.96423 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.47124 * 60.00075 * 9 8 7 27 27 H 1.09001 * 109.46975 * 300.00196 * 9 8 7 28 28 H 1.09001 * 109.47194 * 299.99756 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99928 * 10 9 8 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 33 33 H 1.07994 * 120.03749 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1984 0.0000 4 6 3.5804 1.2037 -0.0005 5 6 4.2772 0.0104 -0.0005 6 17 6.0132 0.0174 -0.0019 7 6 3.5859 -1.1961 0.0005 8 16 4.4696 -2.7204 -0.0001 9 6 3.1450 -3.9599 0.0025 10 6 3.7583 -5.3616 0.0028 11 6 2.6412 -6.4071 0.0044 12 6 3.2452 -7.7877 0.0040 13 1 4.3186 -7.9076 0.0024 14 6 2.4276 -8.8979 0.0058 15 7 1.1205 -8.7519 0.0083 16 14 3.1763 -10.6093 0.0061 17 1 3.3765 -11.0617 1.4064 18 1 2.2630 -11.5493 -0.6921 19 1 4.4848 -10.5773 -0.6955 20 6 2.1964 -1.1965 -0.0049 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 1.6553 2.1324 0.0004 25 1 4.1162 2.1414 -0.0010 26 1 2.5273 -3.8334 -0.8866 27 1 2.5300 -3.8326 0.8933 28 1 4.3736 -5.4893 -0.8879 29 1 4.3758 -5.4879 0.8920 30 1 2.0256 -6.2797 0.8948 31 1 2.0240 -6.2807 -0.8851 32 1 0.5454 -9.5330 0.0099 33 1 1.6562 -2.1316 -0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644211370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:06 Heat of formation + Delta-G solvation = -26.993188 kcal Electronic energy + Delta-G solvation = -15196.620072 eV Core-core repulsion = 12565.511586 eV Total energy + Delta-G solvation = -2631.108486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30948 -37.53986 -36.42837 -34.13290 -33.51635 -32.29823 -29.48071 -27.73457 -25.48792 -24.10818 -22.91787 -21.79287 -18.68192 -18.31345 -17.41499 -16.81125 -16.56896 -16.32691 -15.62416 -15.06098 -14.93536 -14.64645 -14.39327 -13.93923 -13.68951 -13.64768 -13.25369 -13.03602 -12.78472 -12.63918 -12.42846 -12.30415 -12.25443 -11.97673 -11.72011 -11.45224 -11.24523 -11.01949 -10.75348 -10.57109 -9.67590 -8.49929 -8.22211 -6.33035 0.01897 0.15215 0.39690 1.09216 1.40567 1.41295 1.44071 1.52717 2.40471 2.48874 3.11610 3.69172 3.86412 3.92394 3.96542 4.19883 4.24209 4.33272 4.50471 4.64096 4.74642 4.81862 4.83767 4.89645 4.98805 5.08966 5.13454 5.20224 5.46808 5.49328 5.65043 5.77714 5.80251 6.20557 6.82249 7.36280 8.89536 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.026372 B = 0.003777 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.470078 B = 7412.286705 C = 8442.704446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 C -0.113 4.113 4 C -0.088 4.088 5 C -0.049 4.049 6 Cl -0.064 7.064 7 C -0.089 4.089 8 S -0.116 6.116 9 C -0.093 4.093 10 C -0.082 4.082 11 C 0.032 3.968 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.964 3.036 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.265 1.265 20 C -0.143 4.143 21 H 0.084 0.916 22 H 0.065 0.935 23 H 0.092 0.908 24 H 0.168 0.832 25 H 0.161 0.839 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.059 0.941 30 H -0.002 1.002 31 H -0.002 1.002 32 H 0.264 0.736 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 22.634 -0.044 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.065 4.065 3 C -0.133 4.133 4 C -0.107 4.107 5 C -0.082 4.082 6 Cl -0.035 7.035 7 C -0.203 4.203 8 S 0.131 5.869 9 C -0.241 4.241 10 C -0.121 4.121 11 C -0.006 4.006 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.189 1.189 20 C -0.167 4.167 21 H 0.102 0.898 22 H 0.084 0.916 23 H 0.111 0.889 24 H 0.186 0.814 25 H 0.179 0.821 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.666 22.211 -0.048 22.371 hybrid contribution -0.951 -1.033 0.007 1.405 sum 1.714 21.178 -0.041 21.247 Atomic orbital electron populations 1.20907 0.88631 1.04136 1.03624 1.20285 0.97891 0.92165 0.96175 1.21410 0.92938 0.98856 1.00139 1.21311 0.94838 0.96337 0.98261 1.20613 0.84767 0.93863 1.08957 1.98361 1.09680 1.98566 1.96901 1.21858 0.96956 0.96123 1.05341 1.85745 1.14253 0.95592 1.91347 1.23736 0.98818 0.96142 1.05417 1.21186 0.98725 0.90540 1.01646 1.18963 0.93470 0.92755 0.95457 1.21656 0.93447 0.92423 1.50883 0.92263 1.25930 0.95236 1.03746 0.94592 1.70081 1.04168 1.31368 1.51469 0.85468 0.78496 0.78702 0.78532 1.19754 1.20598 1.18883 1.21272 0.91443 1.00019 1.03943 0.89776 0.91593 0.88914 0.81425 0.82129 0.89464 0.89476 0.92266 0.92242 0.98332 0.98323 0.92673 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 10.01 71.24 0.71 -0.90 16 2 C -0.06 -1.22 5.88 -19.88 -0.12 -1.34 16 3 C -0.11 -1.79 9.70 22.30 0.22 -1.58 16 4 C -0.09 -1.62 9.82 22.27 0.22 -1.40 16 5 C -0.05 -1.22 6.34 22.45 0.14 -1.08 16 6 Cl -0.06 -1.59 27.84 -2.72 -0.08 -1.67 16 7 C -0.09 -2.51 6.11 22.64 0.14 -2.37 16 8 S -0.12 -3.72 20.83 -56.49 -1.18 -4.90 16 9 C -0.09 -3.20 4.33 71.98 0.31 -2.89 16 10 C -0.08 -3.40 5.16 30.59 0.16 -3.24 16 11 C 0.03 1.69 4.97 29.85 0.15 1.84 16 12 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 14 C 0.00 0.18 5.46 84.65 0.46 0.64 16 15 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 16 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 20 C -0.14 -3.63 9.02 22.41 0.20 -3.43 16 21 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 23 H 0.09 0.87 8.08 -2.38 -0.02 0.85 16 24 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 25 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 26 H 0.09 2.91 7.73 -2.39 -0.02 2.89 16 27 H 0.09 2.91 7.76 -2.39 -0.02 2.89 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.13 3.35 5.88 -2.91 -0.02 3.34 16 Total: -1.00 -64.33 309.14 4.98 -59.36 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.09 Total: 3.32 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 2.83 Total: -46.57 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.28 Total: -55.72 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.18 Total: -4.90 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -64.33 4.98 -59.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644211370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.362 kcal (2) G-P(sol) polarization free energy of solvation -64.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds