Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31077 * 1 3 3 Si 1.86801 * 119.99630 * 2 1 4 4 H 1.48501 * 109.46923 * 269.99414 * 3 2 1 5 5 H 1.48495 * 109.47486 * 29.99665 * 3 2 1 6 6 H 1.48503 * 109.46658 * 150.00022 * 3 2 1 7 7 C 1.39326 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00198 * 179.97438 * 7 2 1 9 9 N 1.36483 * 119.99855 * 0.02562 * 7 2 1 10 10 N 1.40145 * 119.81803 * 359.97438 * 9 7 2 11 11 C 1.31159 * 120.35512 * 179.77375 * 10 9 7 12 12 C 1.41806 * 120.61816 * 359.70085 * 11 10 9 13 13 C 1.35638 * 119.68193 * 0.57595 * 12 11 10 14 14 C 1.34784 * 119.82018 * 179.97438 * 9 7 2 15 15 O 1.21976 * 120.07794 * 0.46891 * 14 9 7 16 16 C 1.50568 * 119.02623 * 180.96820 * 12 11 10 17 17 O 1.42750 * 110.21629 * 329.18273 * 16 12 11 18 18 C 1.35570 * 118.48160 * 48.70539 * 17 16 12 19 19 C 1.38465 * 120.88448 * 145.15656 * 18 17 16 20 20 C 1.38222 * 119.95746 * 179.38631 * 19 18 17 21 21 C 1.38446 * 120.57692 * 359.97438 * 20 19 18 22 22 C 1.38144 * 120.19232 * 0.13831 * 21 20 19 23 23 C 1.38890 * 119.60781 * 0.02562 * 22 21 20 24 24 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.42819 * 179.63270 * 13 12 11 26 26 H 1.08998 * 109.34960 * 89.41147 * 16 12 11 27 27 H 1.09002 * 109.34784 * 208.95730 * 16 12 11 28 28 H 1.07997 * 120.01879 * 359.40637 * 19 18 17 29 29 H 1.07996 * 119.71484 * 179.97438 * 20 19 18 30 30 H 1.08002 * 119.90459 * 180.12056 * 21 20 19 31 31 H 1.08002 * 120.19563 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 2.4922 2.0464 -1.4001 5 1 1.4421 2.6527 0.6999 6 1 3.5422 1.4402 0.7001 7 6 2.0075 -1.2066 0.0005 8 1 3.0875 -1.2065 0.0001 9 7 1.3251 -2.3886 0.0005 10 7 -0.0764 -2.3841 0.0005 11 6 -0.7428 -3.5138 -0.0039 12 6 -0.0586 -4.7559 -0.0152 13 6 1.2976 -4.7758 -0.0096 14 6 2.0027 -3.5537 0.0005 15 8 3.2224 -3.5515 0.0092 16 6 -0.8593 -6.0308 -0.0423 17 8 -2.1029 -5.8467 0.6340 18 6 -2.8532 -4.7611 0.3233 19 6 -4.2362 -4.8294 0.3237 20 6 -4.9827 -3.7074 0.0163 21 6 -4.3600 -2.5102 -0.2929 22 6 -2.9811 -2.4258 -0.3000 23 6 -2.2233 -3.5493 0.0044 24 1 -0.4850 0.8401 -0.0004 25 1 1.8309 -5.7149 -0.0120 26 1 -1.0497 -6.3157 -1.0770 27 1 -0.2944 -6.8225 0.4499 28 1 -4.7313 -5.7585 0.5643 29 1 -6.0611 -3.7651 0.0173 30 1 -4.9539 -1.6397 -0.5295 31 1 -2.4953 -1.4920 -0.5416 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652890907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = 30.258533 kcal Electronic energy + Delta-G solvation = -20067.424228 eV Core-core repulsion = 16894.937998 eV Total energy + Delta-G solvation = -3172.486230 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44496 -39.19692 -37.08704 -35.77863 -34.64297 -32.26195 -31.49193 -30.08235 -28.94796 -27.52595 -25.05938 -23.76529 -22.59526 -21.32362 -20.30095 -18.77061 -17.53824 -17.20180 -16.03930 -15.71706 -15.47632 -14.89125 -14.63740 -14.43651 -14.10884 -13.82507 -13.36854 -13.09763 -12.62780 -12.39482 -12.03790 -12.00086 -11.61256 -11.39073 -11.29992 -11.19969 -10.91937 -10.70778 -10.25422 -10.11080 -9.58055 -8.95118 -8.56067 -8.40438 -7.98631 -7.45415 -6.93340 -4.46186 1.38868 1.59889 1.77189 2.88605 2.90001 2.97059 3.00349 3.47712 3.65969 3.89398 4.16792 4.35085 4.96334 5.00410 5.19569 5.26837 5.33087 5.50088 5.58247 5.59998 5.77152 5.85920 6.02934 6.14041 6.42274 6.62247 6.71986 6.75516 6.84628 6.91047 7.10337 7.19473 7.22831 7.52641 7.77908 7.94407 8.39556 9.12839 9.47559 9.89159 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.007493 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.698832 B = 3735.772972 C = 5096.901823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.029 3.971 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.240 4.240 8 H 0.140 0.860 9 N -0.184 5.184 10 N -0.167 5.167 11 C 0.029 3.971 12 C -0.142 4.142 13 C -0.217 4.217 14 C 0.418 3.582 15 O -0.601 6.601 16 C 0.122 3.878 17 O -0.319 6.319 18 C 0.122 3.878 19 C -0.149 4.149 20 C -0.102 4.102 21 C -0.151 4.151 22 C -0.062 4.062 23 C -0.057 4.057 24 H 0.283 0.717 25 H 0.135 0.865 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 -2.762 -1.023 9.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.190 4.190 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.380 4.380 8 H 0.157 0.843 9 N 0.018 4.982 10 N 0.003 4.997 11 C -0.125 4.125 12 C -0.151 4.151 13 C -0.246 4.246 14 C 0.226 3.774 15 O -0.489 6.489 16 C 0.047 3.953 17 O -0.234 6.234 18 C 0.076 3.924 19 C -0.168 4.168 20 C -0.121 4.121 21 C -0.169 4.169 22 C -0.081 4.081 23 C -0.060 4.060 24 H 0.094 0.906 25 H 0.152 0.848 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.535 -1.976 -0.878 8.805 hybrid contribution 0.623 -0.083 -0.109 0.638 sum -7.912 -2.059 -0.987 8.235 Atomic orbital electron populations 1.70161 1.06654 1.29115 1.29837 1.25968 0.95918 1.01111 0.96048 0.85606 0.79788 0.78255 0.79597 1.18998 1.19563 1.18080 1.20800 0.94013 0.80868 1.42307 0.84257 1.46183 1.02912 1.07663 1.41420 1.76774 0.87776 1.19750 1.15432 1.19900 0.92933 0.89790 1.09894 1.20656 0.94786 0.95088 1.04585 1.21364 0.92781 0.98093 1.12382 1.17377 0.88672 0.84535 0.86803 1.90755 1.12581 1.86602 1.59004 1.21512 0.81585 0.95071 0.97139 1.85720 1.32460 1.42414 1.62762 1.18909 0.90525 0.85433 0.97576 1.20401 0.90536 0.99745 1.06112 1.20887 0.99228 0.92424 0.99570 1.21058 0.94507 0.97826 1.03482 1.21213 0.93001 0.98270 0.95621 1.18337 0.90087 0.93376 1.04152 0.90587 0.84761 0.91599 0.87116 0.85575 0.86020 0.86117 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -17.46 11.27 55.51 0.63 -16.83 16 2 C 0.03 0.69 5.49 -17.47 -0.10 0.59 16 3 Si 0.95 17.55 29.55 -169.99 -5.02 12.53 16 4 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 6 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 7 C -0.24 -6.29 9.63 -15.08 -0.15 -6.43 16 8 H 0.14 3.61 7.14 -52.49 -0.37 3.23 16 9 N -0.18 -5.00 3.62 -13.72 -0.05 -5.05 16 10 N -0.17 -4.32 8.36 33.48 0.28 -4.04 16 11 C 0.03 0.69 6.82 -82.74 -0.56 0.13 16 12 C -0.14 -3.05 5.82 -104.25 -0.61 -3.66 16 13 C -0.22 -4.98 9.70 -39.43 -0.38 -5.36 16 14 C 0.42 11.31 7.45 -15.17 -0.11 11.20 16 15 O -0.60 -17.53 16.66 4.94 0.08 -17.45 16 16 C 0.12 2.06 6.97 35.94 0.25 2.31 16 17 O -0.32 -5.74 10.30 -18.40 -0.19 -5.93 16 18 C 0.12 2.22 6.46 -38.74 -0.25 1.97 16 19 C -0.15 -2.24 10.00 -39.50 -0.39 -2.64 16 20 C -0.10 -1.39 10.02 -39.51 -0.40 -1.79 16 21 C -0.15 -2.25 10.04 -39.54 -0.40 -2.65 16 22 C -0.06 -1.15 9.67 -39.37 -0.38 -1.53 16 23 C -0.06 -1.16 5.83 -104.85 -0.61 -1.77 16 24 H 0.28 6.04 8.30 -40.82 -0.34 5.70 16 25 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.11 1.55 8.10 -51.93 -0.42 1.13 16 28 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.14 2.86 7.85 -52.49 -0.41 2.45 16 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -30.47 276.74 -6.65 -37.11 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.46 Total: 5.12 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -4.09 Total: -9.63 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.86 Total: -25.92 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.11 Total: -23.38 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.02 Total: 12.53 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.47 -6.65 -37.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652890907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.371 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds