Wall clock time and date at job start Mon Mar 30 2020 01:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99971 * 2 1 4 4 H 1.48493 * 109.47400 * 89.99888 * 3 2 1 5 5 H 1.48505 * 109.46853 * 210.00078 * 3 2 1 6 6 H 1.48506 * 109.46967 * 329.99837 * 3 2 1 7 7 C 1.38806 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00083 * 197.31481 * 7 2 1 9 9 N 1.36935 * 120.00563 * 17.31546 * 7 2 1 10 10 C 1.46500 * 119.99510 * 39.76747 * 9 7 2 11 11 C 1.50698 * 109.47399 * 90.00704 * 10 9 7 12 12 C 1.38496 * 120.44688 * 89.99316 * 11 10 9 13 13 F 1.35105 * 119.64058 * 359.97438 * 12 11 10 14 14 N 1.32054 * 120.71650 * 179.97438 * 12 11 10 15 15 C 1.31955 * 121.71993 * 0.02562 * 14 12 11 16 16 C 1.38050 * 120.81489 * 359.97438 * 15 14 12 17 17 C 1.38656 * 120.43292 * 269.72097 * 11 10 9 18 18 Cl 1.73602 * 120.78838 * 359.97438 * 17 11 10 19 19 C 1.46494 * 120.00174 * 219.76735 * 9 7 2 20 20 C 1.52996 * 117.50108 * 13.65969 * 19 9 7 21 21 C 1.53002 * 60.00155 * 252.50641 * 20 19 9 22 22 H 0.96994 * 119.99686 * 354.49102 * 1 2 3 23 23 H 1.09011 * 109.46967 * 210.00048 * 10 9 7 24 24 H 1.08998 * 109.47322 * 329.99780 * 10 9 7 25 25 H 1.07999 * 119.59296 * 180.02562 * 15 14 12 26 26 H 1.08001 * 120.39595 * 179.97438 * 16 15 14 27 27 H 1.09007 * 115.55095 * 159.36448 * 19 9 7 28 28 H 1.09003 * 117.49923 * 359.97438 * 20 19 9 29 29 H 1.09003 * 117.50057 * 145.01654 * 20 19 9 30 30 H 1.08992 * 117.50000 * 252.50780 * 21 20 19 31 31 H 1.08997 * 117.51251 * 107.47369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0536 -1.2233 0.2789 9 7 1.3721 -2.3613 -0.3519 10 6 0.4146 -2.3623 -1.4606 11 6 1.1369 -2.6654 -2.7480 12 6 1.2814 -3.9731 -3.1806 13 9 0.7707 -4.9819 -2.4410 14 7 1.9130 -4.2448 -4.3081 15 6 2.4279 -3.2919 -5.0618 16 6 2.3228 -1.9653 -4.6945 17 6 1.6609 -1.6382 -3.5180 18 17 1.4980 0.0171 -3.0208 19 6 1.6470 -3.6004 0.3798 20 6 2.3950 -3.4846 1.7094 21 6 3.1050 -4.0535 0.4793 22 1 -0.4849 0.8361 0.0806 23 1 -0.3460 -3.1228 -1.2831 24 1 -0.0599 -1.3836 -1.5319 25 1 2.9372 -3.5530 -5.9777 26 1 2.7472 -1.1909 -5.3163 27 1 0.8840 -4.3744 0.2970 28 1 2.6829 -2.4865 2.0396 29 1 2.1240 -4.1824 2.5017 30 1 3.3011 -5.1255 0.4623 31 1 3.8596 -3.4298 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658355277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:49 Heat of formation + Delta-G solvation = 40.331267 kcal Electronic energy + Delta-G solvation = -19095.106535 eV Core-core repulsion = 15932.997032 eV Total energy + Delta-G solvation = -3162.109504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.53205 -39.66701 -37.08265 -36.04678 -33.92860 -32.19613 -31.16386 -29.74534 -26.04710 -24.01566 -23.10476 -21.69628 -21.37280 -19.88246 -17.74462 -17.09259 -16.55518 -15.65409 -15.57286 -15.11746 -14.44801 -14.28858 -13.74443 -13.51278 -13.32515 -13.06206 -12.70218 -12.22075 -11.82569 -11.62039 -11.33840 -10.88131 -10.70735 -10.62020 -10.59677 -10.16243 -10.09033 -9.69144 -9.38175 -9.34709 -8.90758 -8.51160 -8.46050 -6.58243 -5.95844 -3.51635 1.23878 1.36421 2.49364 3.27044 3.33347 3.35741 3.84022 3.98203 4.33262 4.89697 4.94199 5.13749 5.15717 5.25242 5.35082 5.72402 5.82172 5.89829 6.00075 6.10708 6.17179 6.29115 6.47880 6.59739 6.71943 6.91802 6.96224 7.15656 7.39489 7.72509 7.92442 8.39700 9.01652 9.63112 10.20556 11.06593 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.011304 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.257066 B = 2476.468832 C = 3609.751032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.040 3.960 3 Si 0.874 3.126 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.285 1.285 7 C -0.261 4.261 8 H 0.060 0.940 9 N -0.534 5.534 10 C 0.174 3.826 11 C -0.140 4.140 12 C 0.312 3.688 13 F -0.110 7.110 14 N -0.519 5.519 15 C 0.119 3.881 16 C -0.184 4.184 17 C 0.039 3.961 18 Cl -0.022 7.022 19 C 0.126 3.874 20 C -0.190 4.190 21 C -0.227 4.227 22 H 0.259 0.741 23 H 0.047 0.953 24 H 0.125 0.875 25 H 0.165 0.835 26 H 0.143 0.857 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 -3.033 -7.271 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.162 4.162 3 Si 0.702 3.298 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.211 1.211 7 C -0.390 4.390 8 H 0.078 0.922 9 N -0.248 5.248 10 C 0.047 3.953 11 C -0.148 4.148 12 C 0.158 3.842 13 F -0.089 7.089 14 N -0.234 5.234 15 C -0.038 4.038 16 C -0.205 4.205 17 C 0.003 3.997 18 Cl 0.008 6.992 19 C 0.017 3.983 20 C -0.229 4.229 21 C -0.267 4.267 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.142 0.858 25 H 0.182 0.818 26 H 0.160 0.840 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.119 -3.590 -7.464 8.549 hybrid contribution 0.558 1.618 0.447 1.769 sum 2.677 -1.972 -7.017 7.765 Atomic orbital electron populations 1.69769 1.05431 1.26324 1.50404 1.25094 0.94884 0.98040 0.98187 0.86685 0.80341 0.84197 0.78596 1.20773 1.19504 1.21055 1.18829 0.92954 0.84028 1.43171 0.92222 1.43237 1.48657 1.04005 1.28947 1.20174 0.90114 1.04695 0.80303 1.21959 1.02320 0.90288 1.00239 1.17826 0.94888 0.83110 0.88367 1.91577 1.83777 1.59521 1.74016 1.66889 1.11553 1.39332 1.05669 1.22182 0.96512 0.87185 0.97930 1.22043 1.02519 0.98568 0.97379 1.21013 0.96928 0.88159 0.93609 1.98417 1.95759 1.14543 1.90514 1.21177 0.91358 0.90786 0.94943 1.23057 1.06475 1.01996 0.91341 1.23333 1.00258 0.98811 1.04333 0.93019 0.93504 0.85787 0.81793 0.83965 0.89139 0.88204 0.90676 0.90874 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.13 11.37 55.49 0.63 -22.50 16 2 C 0.04 1.01 3.24 -17.43 -0.06 0.95 16 3 Si 0.87 20.43 27.97 -169.99 -4.75 15.68 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.26 -6.62 7.56 -15.06 -0.11 -6.73 16 8 H 0.06 1.57 7.30 -52.48 -0.38 1.19 16 9 N -0.53 -12.68 2.75 -167.03 -0.46 -13.14 16 10 C 0.17 3.92 4.94 -5.20 -0.03 3.89 16 11 C -0.14 -2.85 5.49 -104.37 -0.57 -3.42 16 12 C 0.31 6.07 8.36 -17.36 -0.15 5.93 16 13 F -0.11 -2.14 16.51 2.25 0.04 -2.10 16 14 N -0.52 -9.24 10.37 -13.61 -0.14 -9.38 16 15 C 0.12 1.73 11.18 -17.57 -0.20 1.53 16 16 C -0.18 -2.79 9.93 -39.41 -0.39 -3.18 16 17 C 0.04 0.73 6.36 -39.18 -0.25 0.48 16 18 Cl -0.02 -0.43 23.41 -51.86 -1.21 -1.65 16 19 C 0.13 2.71 6.61 -67.93 -0.45 2.26 16 20 C -0.19 -3.80 9.82 -26.73 -0.26 -4.06 16 21 C -0.23 -4.48 10.10 -26.73 -0.27 -4.75 16 22 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 23 H 0.05 1.02 7.56 -51.92 -0.39 0.63 16 24 H 0.12 3.04 4.38 -51.93 -0.23 2.81 16 25 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 26 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.09 1.85 8.10 -51.92 -0.42 1.43 16 28 H 0.10 2.18 6.98 -51.93 -0.36 1.82 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.75 8.02 -51.93 -0.42 1.33 16 LS Contribution 280.35 15.07 4.22 4.22 Total: -1.00 -27.00 280.35 -7.44 -34.44 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.03 Total: 1.53 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.73 Total: -7.10 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.03 Total: -45.02 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.75 Total: 15.68 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.21 Total: -1.65 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.00 -7.44 -34.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658355277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.767 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds