Wall clock time and date at job start Mon Mar 30 2020 01:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99971 * 2 1 4 4 H 1.48493 * 109.47400 * 89.99888 * 3 2 1 5 5 H 1.48505 * 109.46853 * 210.00078 * 3 2 1 6 6 H 1.48506 * 109.46967 * 329.99837 * 3 2 1 7 7 C 1.38806 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00083 * 197.31481 * 7 2 1 9 9 N 1.36935 * 120.00563 * 17.31546 * 7 2 1 10 10 C 1.46500 * 119.99510 * 39.76747 * 9 7 2 11 11 C 1.50698 * 109.47399 * 90.00704 * 10 9 7 12 12 C 1.38496 * 120.44688 * 89.99316 * 11 10 9 13 13 F 1.35105 * 119.64058 * 359.97438 * 12 11 10 14 14 N 1.32054 * 120.71650 * 179.97438 * 12 11 10 15 15 C 1.31955 * 121.71993 * 0.02562 * 14 12 11 16 16 C 1.38050 * 120.81489 * 359.97438 * 15 14 12 17 17 C 1.38656 * 120.43292 * 269.72097 * 11 10 9 18 18 Cl 1.73602 * 120.78838 * 359.97438 * 17 11 10 19 19 C 1.46494 * 120.00174 * 219.76735 * 9 7 2 20 20 C 1.52996 * 117.50108 * 13.65969 * 19 9 7 21 21 C 1.53002 * 60.00155 * 252.50641 * 20 19 9 22 22 H 0.96994 * 119.99686 * 354.49102 * 1 2 3 23 23 H 1.09011 * 109.46967 * 210.00048 * 10 9 7 24 24 H 1.08998 * 109.47322 * 329.99780 * 10 9 7 25 25 H 1.07999 * 119.59296 * 180.02562 * 15 14 12 26 26 H 1.08001 * 120.39595 * 179.97438 * 16 15 14 27 27 H 1.09007 * 115.55095 * 159.36448 * 19 9 7 28 28 H 1.09003 * 117.49923 * 359.97438 * 20 19 9 29 29 H 1.09003 * 117.50057 * 145.01654 * 20 19 9 30 30 H 1.08992 * 117.50000 * 252.50780 * 21 20 19 31 31 H 1.08997 * 117.51251 * 107.47369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0536 -1.2233 0.2789 9 7 1.3721 -2.3613 -0.3519 10 6 0.4146 -2.3623 -1.4606 11 6 1.1369 -2.6654 -2.7480 12 6 1.2814 -3.9731 -3.1806 13 9 0.7707 -4.9819 -2.4410 14 7 1.9130 -4.2448 -4.3081 15 6 2.4279 -3.2919 -5.0618 16 6 2.3228 -1.9653 -4.6945 17 6 1.6609 -1.6382 -3.5180 18 17 1.4980 0.0171 -3.0208 19 6 1.6470 -3.6004 0.3798 20 6 2.3950 -3.4846 1.7094 21 6 3.1050 -4.0535 0.4793 22 1 -0.4849 0.8361 0.0806 23 1 -0.3460 -3.1228 -1.2831 24 1 -0.0599 -1.3836 -1.5319 25 1 2.9372 -3.5530 -5.9777 26 1 2.7472 -1.1909 -5.3163 27 1 0.8840 -4.3744 0.2970 28 1 2.6829 -2.4865 2.0396 29 1 2.1240 -4.1824 2.5017 30 1 3.3011 -5.1255 0.4623 31 1 3.8596 -3.4298 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658355277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:49 Heat of formation + Delta-G solvation = 25.713102 kcal Electronic energy + Delta-G solvation = -19095.740426 eV Core-core repulsion = 15932.997032 eV Total energy + Delta-G solvation = -3162.743395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.00559 -41.05114 -38.76347 -37.53428 -35.61107 -33.87263 -32.60083 -31.39296 -27.75065 -25.72863 -24.51400 -23.18938 -22.97579 -21.64844 -19.15961 -18.54403 -18.30730 -17.29250 -17.13561 -16.53317 -16.23102 -15.87249 -15.40785 -14.92607 -14.83501 -14.51095 -14.26120 -13.77123 -13.48151 -13.31190 -12.99391 -12.66607 -12.50173 -12.39822 -12.20819 -11.94076 -11.69095 -11.41929 -11.00252 -10.76828 -10.41828 -10.32001 -9.88272 -8.42666 -7.86515 -5.46521 -0.12287 -0.02101 0.97728 1.39916 1.47065 1.49493 2.40996 2.52138 2.62272 3.19660 3.41243 3.53435 3.67316 3.79829 3.89983 4.26907 4.36234 4.43480 4.50525 4.55528 4.74877 4.77548 4.90726 5.01535 5.12441 5.31125 5.52242 5.53829 5.58708 5.72969 6.48223 6.59639 7.13540 7.78193 8.33503 9.12856 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.011304 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.257066 B = 2476.468832 C = 3609.751032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.016 3.984 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.285 1.285 7 C -0.258 4.258 8 H 0.044 0.956 9 N -0.550 5.550 10 C 0.180 3.820 11 C -0.161 4.161 12 C 0.301 3.699 13 F -0.117 7.117 14 N -0.529 5.529 15 C 0.138 3.862 16 C -0.170 4.170 17 C 0.025 3.975 18 Cl -0.039 7.039 19 C 0.104 3.896 20 C -0.184 4.184 21 C -0.208 4.208 22 H 0.256 0.744 23 H 0.040 0.960 24 H 0.104 0.896 25 H 0.219 0.781 26 H 0.181 0.819 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -3.849 -9.029 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.184 4.184 3 Si 0.735 3.265 4 H -0.211 1.211 5 H -0.192 1.192 6 H -0.211 1.211 7 C -0.388 4.388 8 H 0.062 0.938 9 N -0.265 5.265 10 C 0.053 3.947 11 C -0.169 4.169 12 C 0.148 3.852 13 F -0.096 7.096 14 N -0.244 5.244 15 C -0.019 4.019 16 C -0.190 4.190 17 C -0.011 4.011 18 Cl -0.010 7.010 19 C -0.005 4.005 20 C -0.223 4.223 21 C -0.249 4.249 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.121 0.879 25 H 0.235 0.765 26 H 0.198 0.802 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.455 -4.426 -9.231 10.805 hybrid contribution 0.188 1.792 0.857 1.996 sum 3.643 -2.634 -8.374 9.505 Atomic orbital electron populations 1.69859 1.06191 1.26289 1.52062 1.25372 0.95143 0.99418 0.98421 0.86161 0.79753 0.82364 0.78226 1.21130 1.19165 1.21070 1.18723 0.92223 0.84932 1.42903 0.93792 1.43332 1.48670 1.04229 1.30275 1.19904 0.90055 1.03244 0.81468 1.21690 1.03510 0.91383 1.00268 1.17854 0.95665 0.82601 0.89108 1.91549 1.84013 1.59615 1.74399 1.67038 1.11734 1.40410 1.05204 1.23144 0.94140 0.86258 0.98355 1.22494 1.00583 1.00036 0.95883 1.21292 0.97827 0.86998 0.94950 1.98407 1.95928 1.15760 1.90914 1.21373 0.92565 0.90542 0.95980 1.23045 1.05914 1.01551 0.91782 1.23243 0.98415 0.99836 1.03373 0.93457 0.94166 0.87854 0.76473 0.80167 0.88387 0.90488 0.87921 0.88334 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.51 11.37 21.65 0.25 -48.27 16 2 C 0.02 0.83 3.24 84.86 0.28 1.10 16 3 Si 0.91 42.09 27.97 68.60 1.92 44.01 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.26 -13.31 7.56 84.03 0.64 -12.67 16 8 H 0.04 2.38 7.30 -2.91 -0.02 2.36 16 9 N -0.55 -26.42 2.75 -682.35 -1.88 -28.30 16 10 C 0.18 8.26 4.94 85.63 0.42 8.68 16 11 C -0.16 -6.48 5.49 -19.70 -0.11 -6.58 16 12 C 0.30 11.34 8.36 84.72 0.71 12.05 16 13 F -0.12 -4.49 16.51 44.97 0.74 -3.75 16 14 N -0.53 -17.26 10.37 -196.98 -2.04 -19.30 16 15 C 0.14 3.37 11.18 84.63 0.95 4.32 16 16 C -0.17 -4.49 9.93 22.38 0.22 -4.27 16 17 C 0.02 0.90 6.36 22.53 0.14 1.04 16 18 Cl -0.04 -1.55 23.41 -2.72 -0.06 -1.62 16 19 C 0.10 4.42 6.61 44.99 0.30 4.72 16 20 C -0.18 -7.24 9.82 30.59 0.30 -6.94 16 21 C -0.21 -7.99 10.10 30.60 0.31 -7.68 16 22 H 0.26 13.46 8.32 -92.71 -0.77 12.69 16 23 H 0.04 1.82 7.56 -2.38 -0.02 1.80 16 24 H 0.10 5.21 4.38 -2.39 -0.01 5.20 16 25 H 0.22 2.98 8.06 -2.91 -0.02 2.96 16 26 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 27 H 0.10 3.98 8.10 -2.38 -0.02 3.96 16 28 H 0.08 3.39 6.98 -2.39 -0.02 3.37 16 29 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 30 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.06 2.70 8.02 -2.39 -0.02 2.68 16 Total: -1.00 -58.98 280.35 4.23 -54.75 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.16 Total: 8.70 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 4.15 Total: -6.23 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -3.68 Total: -95.87 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.74 Total: -3.75 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.92 Total: 44.01 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.06 Total: -1.62 kcal Total: -58.98 4.23 -54.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658355277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.466 kcal (2) G-P(sol) polarization free energy of solvation -58.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds