Wall clock time and date at job start Mon Mar 30 2020 00:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99508 * 2 1 4 4 H 1.48500 * 109.46756 * 269.99504 * 3 2 1 5 5 H 1.48496 * 109.47426 * 29.99607 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99793 * 3 2 1 7 7 C 1.37878 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99714 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21574 * 119.99695 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99935 * 179.72905 * 11 10 9 14 14 C 1.38885 * 120.00113 * 180.02562 * 13 11 10 15 15 N 1.29522 * 125.27382 * 179.71893 * 14 13 11 16 16 C 1.33671 * 115.65910 * 179.82655 * 15 14 13 17 17 C 1.47192 * 122.50054 * 180.22002 * 16 15 14 18 18 N 1.34772 * 119.99770 * 0.25890 * 17 16 15 19 19 O 1.21644 * 119.99886 * 180.26306 * 17 16 15 20 20 C 1.34873 * 114.99776 * 0.46183 * 16 15 14 21 21 S 1.70983 * 109.20054 * 359.75458 * 20 16 15 22 22 H 0.96996 * 120.00207 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 24 24 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 25 25 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 26 26 H 0.97004 * 120.00018 * 359.97438 * 13 11 10 27 27 H 0.96994 * 120.00650 * 359.97438 * 18 17 16 28 28 H 0.97011 * 119.99674 * 180.02562 * 18 17 16 29 29 H 1.08000 * 125.39940 * 179.75900 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1151 -1.8972 0.0025 13 7 5.7744 -4.0920 0.0074 14 6 7.1399 -4.3458 0.0089 15 7 7.6820 -5.5220 0.0192 16 6 9.0185 -5.5434 0.0150 17 6 9.7895 -6.7972 0.0205 18 7 9.1481 -7.9826 0.0249 19 8 11.0055 -6.7636 0.0212 20 6 9.6079 -4.3303 0.0105 21 16 8.4013 -3.1189 0.0048 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8912 24 1 3.8753 -0.6802 -0.8887 25 1 3.3696 -3.3125 0.0002 26 1 5.1440 -4.8293 0.0110 27 1 8.1786 -8.0095 0.0247 28 1 9.6563 -8.8089 0.0289 29 1 10.6732 -4.1523 0.0105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665366016.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:24 Heat of formation + Delta-G solvation = -21.043769 kcal Electronic energy + Delta-G solvation = -17311.619909 eV Core-core repulsion = 14168.812652 eV Total energy + Delta-G solvation = -3142.807257 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.59375 -39.97683 -38.34796 -35.03396 -34.59566 -33.75107 -32.54151 -30.05116 -28.04837 -25.68611 -23.36024 -21.91504 -21.24132 -20.08136 -19.09161 -17.88228 -17.55524 -17.11797 -16.52946 -15.94965 -15.87245 -15.09279 -15.01814 -14.61430 -14.27539 -13.88825 -13.51683 -13.20653 -12.62965 -12.50455 -11.96670 -11.15379 -11.08453 -10.87233 -10.48115 -10.13840 -10.03671 -9.99697 -9.88330 -9.64359 -9.42228 -8.98020 -8.65032 -8.13800 -6.33387 -4.37757 0.57643 0.99896 1.76821 1.80278 2.35361 3.11584 3.18762 3.26406 3.32034 3.39727 3.47018 4.19240 4.22798 4.54043 5.01634 5.12641 5.26121 5.55130 6.09563 6.28455 6.54327 6.71724 6.87028 6.88087 7.08565 7.20318 7.47109 7.97236 8.07472 8.26767 8.50796 8.65944 9.24325 10.78118 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.052107 B = 0.003646 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.225400 B = 7678.592595 C = 8200.664274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.236 3.764 10 N -0.699 5.699 11 C 0.692 3.308 12 O -0.569 6.569 13 N -0.637 5.637 14 C 0.288 3.712 15 N -0.499 5.499 16 C 0.018 3.982 17 C 0.603 3.397 18 N -0.839 5.839 19 O -0.544 6.544 20 C -0.277 4.277 21 S 0.296 5.704 22 H 0.269 0.731 23 H 0.031 0.969 24 H 0.026 0.974 25 H 0.400 0.600 26 H 0.420 0.580 27 H 0.411 0.589 28 H 0.403 0.597 29 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.716 -11.315 0.038 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.587 4.587 8 H 0.099 0.901 9 C 0.114 3.886 10 N -0.350 5.350 11 C 0.391 3.609 12 O -0.447 6.447 13 N -0.290 5.290 14 C -0.083 4.083 15 N -0.224 5.224 16 C -0.117 4.117 17 C 0.386 3.614 18 N -0.402 5.402 19 O -0.421 6.421 20 C -0.421 4.421 21 S 0.548 5.452 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.235 0.765 26 H 0.258 0.742 27 H 0.241 0.759 28 H 0.233 0.767 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 14.506 -9.416 0.043 17.294 hybrid contribution -0.260 -1.174 -0.019 1.203 sum 14.246 -10.590 0.024 17.751 Atomic orbital electron populations 1.69865 1.06229 1.27655 1.48695 1.24767 0.94808 0.99183 0.93688 0.86825 0.80575 0.83176 0.79166 1.19729 1.20771 1.18388 1.21010 0.88131 0.95411 1.54196 0.90074 1.19573 0.95355 0.76335 0.97354 1.45439 1.02525 1.12208 1.74841 1.16042 0.84751 0.81110 0.79045 1.90819 1.54204 1.41614 1.58044 1.41924 1.02583 1.09237 1.75295 1.23967 0.90229 0.92605 1.01515 1.66985 1.09176 1.23228 1.23020 1.19590 0.87685 0.94401 1.10006 1.17163 0.86222 0.82919 0.75135 1.43624 1.12141 1.07538 1.76897 1.90844 1.13028 1.87332 1.50929 1.27003 1.08192 0.98327 1.08591 1.85322 0.90381 1.03969 1.65515 0.92057 0.95158 0.95618 0.76517 0.74170 0.75943 0.76680 0.79740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 13.96 55.43 0.77 -24.32 15 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 15 3 Si 0.88 20.09 27.47 -169.99 -4.67 15.42 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.26 -5.84 6.54 56.52 0.37 -5.47 15 7 C -0.55 -13.94 9.83 -34.44 -0.34 -14.27 15 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 15 9 C 0.24 5.20 4.50 -5.19 -0.02 5.17 15 10 N -0.70 -12.25 5.55 -66.42 -0.37 -12.62 15 11 C 0.69 11.52 8.53 -86.91 -0.74 10.78 15 12 O -0.57 -11.00 13.84 5.30 0.07 -10.92 15 13 N -0.64 -8.30 5.40 -16.31 -0.09 -8.39 15 14 C 0.29 3.93 8.36 -87.55 -0.73 3.20 15 15 N -0.50 -6.42 10.12 -10.51 -0.11 -6.53 15 16 C 0.02 0.24 6.66 -84.62 -0.56 -0.32 15 17 C 0.60 7.65 8.06 -12.63 -0.10 7.54 15 18 N -0.84 -7.29 8.87 30.38 0.27 -7.02 15 19 O -0.54 -8.42 17.49 5.24 0.09 -8.33 15 20 C -0.28 -3.45 10.55 29.54 0.31 -3.14 15 21 S 0.30 3.93 20.28 -107.50 -2.18 1.75 15 22 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 23 H 0.03 0.70 7.20 -51.93 -0.37 0.33 15 24 H 0.03 0.59 7.57 -51.93 -0.39 0.20 15 25 H 0.40 5.97 8.34 -40.82 -0.34 5.63 15 26 H 0.42 4.16 8.83 -40.82 -0.36 3.80 15 27 H 0.41 3.05 8.31 -40.82 -0.34 2.71 15 28 H 0.40 2.65 8.93 -40.82 -0.36 2.28 15 29 H 0.19 2.04 7.99 -52.49 -0.42 1.62 15 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -31.46 279.00 -6.45 -37.91 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -2.17 Total: 7.85 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -2.29 Total: 10.99 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.48 Total: -58.88 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.16 Total: -19.25 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.18 Total: 1.75 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.46 -6.45 -37.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665366016.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.868 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds