Wall clock time and date at job start Mon Mar 30 2020 00:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99508 * 2 1 4 4 H 1.48500 * 109.46756 * 269.99504 * 3 2 1 5 5 H 1.48496 * 109.47426 * 29.99607 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99793 * 3 2 1 7 7 C 1.37878 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99714 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21574 * 119.99695 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99935 * 179.72905 * 11 10 9 14 14 C 1.38885 * 120.00113 * 180.02562 * 13 11 10 15 15 N 1.29522 * 125.27382 * 179.71893 * 14 13 11 16 16 C 1.33671 * 115.65910 * 179.82655 * 15 14 13 17 17 C 1.47192 * 122.50054 * 180.22002 * 16 15 14 18 18 N 1.34772 * 119.99770 * 0.25890 * 17 16 15 19 19 O 1.21644 * 119.99886 * 180.26306 * 17 16 15 20 20 C 1.34873 * 114.99776 * 0.46183 * 16 15 14 21 21 S 1.70983 * 109.20054 * 359.75458 * 20 16 15 22 22 H 0.96996 * 120.00207 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 24 24 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 25 25 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 26 26 H 0.97004 * 120.00018 * 359.97438 * 13 11 10 27 27 H 0.96994 * 120.00650 * 359.97438 * 18 17 16 28 28 H 0.97011 * 119.99674 * 180.02562 * 18 17 16 29 29 H 1.08000 * 125.39940 * 179.75900 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1151 -1.8972 0.0025 13 7 5.7744 -4.0920 0.0074 14 6 7.1399 -4.3458 0.0089 15 7 7.6820 -5.5220 0.0192 16 6 9.0185 -5.5434 0.0150 17 6 9.7895 -6.7972 0.0205 18 7 9.1481 -7.9826 0.0249 19 8 11.0055 -6.7636 0.0212 20 6 9.6079 -4.3303 0.0105 21 16 8.4013 -3.1189 0.0048 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8912 24 1 3.8753 -0.6802 -0.8887 25 1 3.3696 -3.3125 0.0002 26 1 5.1440 -4.8293 0.0110 27 1 8.1786 -8.0095 0.0247 28 1 9.6563 -8.8089 0.0289 29 1 10.6732 -4.1523 0.0105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665366016.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:24 Heat of formation + Delta-G solvation = -47.892491 kcal Electronic energy + Delta-G solvation = -17312.784157 eV Core-core repulsion = 14168.812652 eV Total energy + Delta-G solvation = -3143.971505 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.75526 -41.13322 -39.40740 -36.50792 -35.93629 -34.63899 -34.43347 -31.21516 -29.73940 -26.73760 -24.82521 -23.28797 -22.54960 -21.24165 -20.28165 -19.18718 -18.47723 -18.32727 -18.13802 -17.17232 -16.88274 -16.58481 -16.21676 -16.18449 -15.26968 -15.13412 -15.06659 -14.44466 -14.24545 -14.20538 -13.15802 -12.92583 -12.70473 -12.18727 -11.90121 -11.66516 -11.60380 -11.31996 -11.05768 -10.89947 -10.74520 -10.46934 -10.19045 -9.27552 -8.36607 -6.44329 -0.46122 -0.03783 0.72844 0.74858 1.13832 1.38583 1.42367 1.52224 1.88062 2.31586 2.32547 2.57907 2.99631 3.02319 3.46031 4.18640 4.27471 4.57058 4.70245 4.97993 5.06037 5.21819 5.33615 5.50905 5.80283 6.09819 6.21081 6.47618 6.58199 6.85059 7.13658 7.22688 7.27990 8.77707 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.052107 B = 0.003646 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.225400 B = 7678.592595 C = 8200.664274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.248 3.752 10 N -0.698 5.698 11 C 0.699 3.301 12 O -0.595 6.595 13 N -0.620 5.620 14 C 0.271 3.729 15 N -0.485 5.485 16 C 0.003 3.997 17 C 0.600 3.400 18 N -0.817 5.817 19 O -0.577 6.577 20 C -0.266 4.266 21 S 0.291 5.709 22 H 0.272 0.728 23 H 0.023 0.977 24 H 0.022 0.978 25 H 0.413 0.587 26 H 0.435 0.565 27 H 0.419 0.581 28 H 0.415 0.585 29 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.900 -11.891 0.022 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.124 3.876 10 N -0.351 5.351 11 C 0.397 3.603 12 O -0.474 6.474 13 N -0.274 5.274 14 C -0.101 4.101 15 N -0.209 5.209 16 C -0.132 4.132 17 C 0.383 3.617 18 N -0.380 5.380 19 O -0.457 6.457 20 C -0.410 4.410 21 S 0.544 5.456 22 H 0.081 0.919 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.249 0.751 26 H 0.277 0.723 27 H 0.251 0.749 28 H 0.248 0.752 29 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 15.679 -10.091 0.028 18.646 hybrid contribution -0.592 -1.135 -0.014 1.280 sum 15.087 -11.226 0.014 18.805 Atomic orbital electron populations 1.69980 1.07826 1.28608 1.50617 1.25577 0.95481 1.02702 0.93634 0.85883 0.79531 0.79214 0.79440 1.19089 1.20474 1.17561 1.21257 0.89906 0.94623 1.52734 0.92056 1.19157 0.93086 0.78590 0.96724 1.45058 1.03390 1.11053 1.75558 1.15915 0.83976 0.81840 0.78525 1.90811 1.54770 1.42936 1.58923 1.41508 1.02853 1.08448 1.74625 1.24056 0.90276 0.92961 1.02758 1.66957 1.09078 1.22797 1.22105 1.19802 0.87779 0.94996 1.10622 1.17160 0.85779 0.83618 0.75151 1.43471 1.12671 1.07018 1.74872 1.90832 1.14248 1.87763 1.52891 1.27146 1.08697 0.97856 1.07273 1.85388 0.90658 1.04295 1.65303 0.91923 0.95868 0.96000 0.75056 0.72323 0.74926 0.75210 0.78477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.16 13.96 21.45 0.30 -52.86 15 2 C 0.03 1.41 5.47 84.65 0.46 1.87 15 3 Si 0.94 40.97 27.47 68.60 1.88 42.85 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 15 7 C -0.55 -27.67 9.83 25.60 0.25 -27.42 15 8 H 0.06 3.27 7.84 -2.91 -0.02 3.25 15 9 C 0.25 10.68 4.50 85.63 0.38 11.06 15 10 N -0.70 -23.55 5.55 -482.32 -2.68 -26.22 15 11 C 0.70 22.13 8.53 179.05 1.53 23.66 15 12 O -0.59 -22.14 13.84 -3.95 -0.05 -22.20 15 13 N -0.62 -14.93 5.40 -323.77 -1.75 -16.68 15 14 C 0.27 6.87 8.36 179.27 1.50 8.37 15 15 N -0.48 -11.44 10.12 -187.17 -1.89 -13.33 15 16 C 0.00 0.07 6.66 40.44 0.27 0.34 15 17 C 0.60 14.15 8.06 86.60 0.70 14.85 15 18 N -0.82 -12.34 8.87 -176.04 -1.56 -13.90 15 19 O -0.58 -17.12 17.49 -4.17 -0.07 -17.19 15 20 C -0.27 -6.18 10.55 67.05 0.71 -5.48 15 21 S 0.29 7.31 20.28 -56.49 -1.15 6.17 15 22 H 0.27 14.53 8.31 -92.71 -0.77 13.76 15 23 H 0.02 1.05 7.20 -2.39 -0.02 1.03 15 24 H 0.02 0.98 7.57 -2.39 -0.02 0.96 15 25 H 0.41 11.77 8.34 -92.70 -0.77 10.99 15 26 H 0.44 7.63 8.83 -92.71 -0.82 6.81 15 27 H 0.42 5.13 8.31 -92.71 -0.77 4.36 15 28 H 0.42 4.49 8.93 -92.70 -0.83 3.66 15 29 H 0.20 4.03 7.99 -2.91 -0.02 4.00 15 Total: -1.00 -66.03 279.00 -3.15 -69.18 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -1.98 Total: 16.94 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 5.80 Total: 27.25 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -7.58 Total: -123.00 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.13 Total: -39.39 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.85 kcal Atomic # 16 Polarization: 7.31 SS G_CDS: -1.15 Total: 6.17 kcal Total: -66.03 -3.15 -69.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665366016.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.284 kcal (2) G-P(sol) polarization free energy of solvation -66.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds